Rmu_sc0001235.1_g000025

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001235.1
OG0000063
Physical Location & Seq
Reverse (-)
123029 .. 128681
5653 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001235.1_g000025.1.cds

Sequence Viewer

Length: 2172 bp
ctgcttgacgttgctgccattgctgggtttaggcctcatggcaccgcttatgactgcactgctcagttgaagcccaaaaccaagtttaggtgtggtcggcacttcgaatatggaagttggatagactatcataatagtgacaaaagcaacaaagttgtcgatcaagagcacatagcgttcctcctctactggctctgtaggtatgtcttctgtgtaccttcagggattagtaaagagtggtctcatttggcagaagttttgcatcgaggaactgatgtggccttaggtgagttggtgctagcctcactgtacaggggtttgcagaaaatcactgtcaacccatttgatggtaaagctgaggggccactttggctgttccaaatgtggttacagatttacttcccagacctaggcccggttagtgcatttcctgccgatgaggttatgggggttaggttgacagaccaagtcccaaaaccacactcccctcgtgattgcttcgcaacgttgtggagtttgaaatcaaacccatgttggacgcacaccttgacgagaaggtatcccggtttcctaaggaataggttcatggatggtccaacctctgatggtgccttagatgaggaaatacaggctgtgctaacgagtgtggtggtgcagagagatctgctgtatggagggatgaaaaatgatgctgcggaaatcagaggcgtgttaaattccagtcgttccacaaagttgaaaccattcctcaccaggtatgtgctaacctctgaaacttccccaggctttgacaaatggtggcatagtcaaaccaaagatcgattttcagtagaacatgatgggccctttgctatcttatatatgcattgtccattccgggatagccatcatctagaagttccaggcttttcccctgctgatggagaaagggaagaaggtgaagagggagaagctaaagttgaaagccctctccctaccgacaaggatcgaaagaggaaaggcaacacaaatgctccaaaatcagctaggcagaagactactcaagtcacagtatctggaatgaagacaaatggatccaataatgaagaagcagaggaaattgatggccgtcataccctgaattttgatggcttgtctggagctcaaattaaggaatccactgttgaccaccaaaatgctgttgttaagccaaaacatataacttcaacttctaaaaataccttcagatctatgaaaaagctgaggtcagatttttcaagtgacacctccgaaaatgctgataacatcggaactgaagaacctgaacagactgaagggccattgatgggaactggggagttaggaagtaaacaaatgtatagcgatggtgctgccttcgaaactgcccccgtacttaccagtatgcacccagctcaaagtgagccaaccacgccagttcaaggattactagacggcaatgtgaggaccctctcaagagaggaaaagttgaaaaagtttgaaaatattgaaaatagtgtggcaaactcatctgtcgaagcttctaaagctgaagatgatcatgcttattccgttattgacgatgtggtggttcgaggcacgagggcgatttttcacgatggccaggtcccagcatacctaagagaggcattaaattatgttcgaggcagaagtcggctaagccatgttttgattgatgctcttgatgagtattttaaggagcttaattgcgcccagacgaaaatgactatgaattccaataagttaacgttgctcgaagatgaagttcgacgagataaggacatcagggataagctggataaagcttcaaatgaaggaaagcaattgcaaattgcagcaatacaaagagcggaggaaatttctcgacttgatgaagaaataaagaccttcggaactatgaaaaagctgatgtcagatttttcaagcgacacctccaaaagagctgagaaaatcgaaactgaagaacctgaacagactgaggggggcccattgatgggaactgtggagctaggaagtaaacaaatgtatggcgatgctgccgttgaagctgcctctatacctaacagttttgacagttttgagctgggtgctgcaagtgagccaaccacgctagttcaaggattaatagagggcaatgtccatgaaaagttttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

723

Amino Acids

80.65

Weight (kDa)

5.47

Isoelectric Point (pI)

43.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 41, 608
AccB7I CCANNNNNTGG 1 cut(s) 347
AccBSI CCGCTC 1 cut(s) 1868
AciI CCGC 3 cut(s) 45, 695, 1868
AclI AACGTT 2 cut(s) 506, 1766
AclWI GGATC 3 cut(s) 993, 1068, 1081
AcoI YGGCCR 2 cut(s) 1105, 1618
AcsI RAATTY 4 cut(s) 715, 1120, 1750, 1875
AcuI CTGAAG 6 cut(s) 204, 1207, 1314, 1332, 1569, 1998
AfaI GTAC 3 cut(s) 216, 311, 1392
AjnI CCWGG 4 cut(s) 752, 781, 901, 1620
Alw21I GWGCWC 2 cut(s) 171, 1144
Alw26I GTCTC 1 cut(s) 246
AlwI GGATC 3 cut(s) 993, 1068, 1081
AlwNI CAGNNNCTG 1 cut(s) 1055
AoxI GGCC 9 cut(s) 32, 279, 362, 412, 842, 1105, 1316, 1618, 2002
ApaI GGGCCC 2 cut(s) 846, 2006
ApeKI GCWGC 7 cut(s) 14, 692, 1370, 1853, 2054, 2066, 2108
ApoI RAATTY 4 cut(s) 715, 1120, 1750, 1875
AseI ATTAAT 1 cut(s) 2141
Asp700I GAANNNNTTC 2 cut(s) 581, 743
AspA2I CCTAGG 1 cut(s) 409
AspLEI GCGC 1 cut(s) 1730
AsuC2I CCSGG 3 cut(s) 416, 564, 878
AsuHPI GGTGA 3 cut(s) 299, 742, 950
AsuII TTCGAA 2 cut(s) 105, 1377
AsuNHI GCTAGC 1 cut(s) 298
AvaII GGWCC 3 cut(s) 593, 1464, 1624
AvrII CCTAGG 1 cut(s) 409
AxyI CCTNAGG 2 cut(s) 283, 572
BaeGI GKGCMC 2 cut(s) 846, 2006
BalI TGGCCA 1 cut(s) 1620
BamHI GGATCC 1 cut(s) 1073
BanI GGYRCC 2 cut(s) 41, 608
BanII GRGCYC 3 cut(s) 846, 1144, 2006
BauI CACGAG 2 cut(s) 489, 1597
BbsI GAAGAC 3 cut(s) 199, 1040, 1070
Bbv12I GWGCWC 2 cut(s) 171, 1144
BbvCI CCTCAGC 2 cut(s) 357, 1241
BbvI GCAGC 6 cut(s) 679, 1357, 1865, 2041, 2053, 2095
BceAI ACGGC 3 cut(s) 1092, 1468, 2042
BcgI CGANNNNNNTGC 2 cut(s) 1352, 1386
BciT130I CCWGG 4 cut(s) 754, 783, 903, 1622
BciVI GTATCC 1 cut(s) 570
BclI TGATCA 1 cut(s) 1555
BcnI CCSGG 3 cut(s) 416, 564, 878
BcoDI GTCTC 1 cut(s) 246
BfaI CTAG 7 cut(s) 299, 410, 893, 1026, 1448, 2027, 2129
BfmI CTRYAG 1 cut(s) 196
BfuI GTATCC 1 cut(s) 570
BglI GCCNNNNNGGC 1 cut(s) 370
BglII AGATCT 2 cut(s) 661, 1226
BisI GCNGC 7 cut(s) 15, 693, 1371, 1854, 2055, 2067, 2109
BlnI CCTAGG 1 cut(s) 409
BlpI GCTNAGC 1 cut(s) 1676
BlsI GCNGC 7 cut(s) 16, 694, 1372, 1855, 2056, 2068, 2110
Bme1390I CCNGG 7 cut(s) 416, 564, 754, 783, 878, 903, 1622
Bme18I GGWCC 3 cut(s) 593, 1464, 1624
BmiI GGNNCC 9 cut(s) 43, 363, 610, 844, 1075, 1466, 1626, 2003, 2004
BmrFI CCNGG 7 cut(s) 416, 564, 754, 783, 878, 903, 1622
BmrI ACTGGG 1 cut(s) 1341
BmsI GCATC 4 cut(s) 271, 679, 1684, 2041
BmtI GCTAGC 1 cut(s) 302
BmuI ACTGGG 1 cut(s) 1341
BpiI GAAGAC 3 cut(s) 199, 1040, 1070
BpmI CTGGAG 1 cut(s) 1158
Bpu10I CCTNAGC 2 cut(s) 357, 1241
Bpu1102I GCTNAGC 1 cut(s) 1676
Bpu14I TTCGAA 2 cut(s) 105, 1377
BpuEI CTTGAG 2 cut(s) 1026, 1456
BpuMI CCSGG 3 cut(s) 416, 564, 878
Bsa29I ATCGAT 1 cut(s) 820
BsaBI GATNNNNATC 1 cut(s) 885
BsaI GGTCTC 1 cut(s) 246
BsaJI CCNNGG 2 cut(s) 409, 781
BsaXI ACNNNNNCTCC 2 cut(s) 997, 1027
Bse1I ACTGG 5 cut(s) 194, 720, 1336, 1398, 1433
Bse21I CCTNAGG 2 cut(s) 283, 572
Bse3DI GCAATG 3 cut(s) 18, 1462, 2158
Bse8I GATNNNNATC 1 cut(s) 885
BseBI CCWGG 4 cut(s) 754, 783, 903, 1622
BseCI ATCGAT 1 cut(s) 820
BseDI CCNNGG 2 cut(s) 409, 781
BseGI GGATG 2 cut(s) 595, 684
BseJI GATNNNNATC 1 cut(s) 885
BseMI GCAATG 3 cut(s) 18, 1462, 2158
BseMII CTCAG 5 cut(s) 77, 348, 1232, 1953, 1986
BseNI ACTGG 5 cut(s) 194, 720, 1336, 1398, 1433
BseRI GAGGAG 1 cut(s) 173
BseSI GKGCMC 2 cut(s) 846, 2006
BseXI GCAGC 6 cut(s) 679, 1357, 1865, 2041, 2053, 2095
BseYI CCCAGC 4 cut(s) 23, 1408, 1627, 2101
BsgI GTGCAG 2 cut(s) 40, 674
BshFI GGCC 9 cut(s) 34, 281, 364, 414, 844, 1107, 1318, 1620, 2004
BshNI GGYRCC 2 cut(s) 41, 608
BshVI ATCGAT 1 cut(s) 820
BsiHKAI GWGCWC 2 cut(s) 171, 1144
BsiSI CCGG 3 cut(s) 416, 564, 877
BslFI GGGAC 2 cut(s) 455, 1610
BsmAI GTCTC 1 cut(s) 246
BsmFI GGGAC 2 cut(s) 455, 1610
BsnI GGCC 9 cut(s) 34, 281, 364, 414, 844, 1107, 1318, 1620, 2004
Bso31I GGTCTC 1 cut(s) 246
Bsp119I TTCGAA 2 cut(s) 105, 1377
Bsp120I GGGCCC 2 cut(s) 842, 2002
Bsp1286I GDGCHC 4 cut(s) 171, 846, 1144, 2006
Bsp1407I TGTACA 1 cut(s) 309
Bsp143I GATC 7 cut(s) 160, 661, 817, 985, 1073, 1226, 1555
Bsp1720I GCTNAGC 1 cut(s) 1676
BspACI CCGC 3 cut(s) 45, 695, 1868
BspANI GGCC 9 cut(s) 34, 281, 364, 414, 844, 1107, 1318, 1620, 2004
BspCNI CTCAG 5 cut(s) 76, 349, 1233, 1954, 1987
BspDI ATCGAT 1 cut(s) 820
BspLI GGNNCC 9 cut(s) 43, 363, 610, 844, 1075, 1466, 1626, 2003, 2004
BspOI GCTAGC 1 cut(s) 302
BspPI GGATC 3 cut(s) 993, 1068, 1081
BspT104I TTCGAA 2 cut(s) 105, 1377
BspT107I GGYRCC 2 cut(s) 41, 608
BspTNI GGTCTC 1 cut(s) 246
BsrBI CCGCTC 1 cut(s) 1868
BsrDI GCAATG 3 cut(s) 18, 1462, 2158
BsrGI TGTACA 1 cut(s) 309
BsrI ACTGG 5 cut(s) 194, 720, 1336, 1398, 1433
BssECI CCNNGG 2 cut(s) 409, 781
BssMI GATC 7 cut(s) 160, 661, 817, 985, 1073, 1226, 1555
BssSI CACGAG 2 cut(s) 489, 1597
BssT1I CCWWGG 1 cut(s) 409
Bst2BI CACGAG 2 cut(s) 489, 1597
Bst2UI CCWGG 4 cut(s) 754, 783, 903, 1622
Bst4CI ACNGT 7 cut(s) 309, 334, 1051, 1162, 2020, 2084, 2093
Bst6I CTCTTC 1 cut(s) 936
BstAPI GCANNNNNTGC 1 cut(s) 431
BstAUI TGTACA 1 cut(s) 309
BstBI TTCGAA 2 cut(s) 105, 1377
BstC8I GCNNGC 1 cut(s) 300
BstENI CCTNNNNNAGG 1 cut(s) 1640
BstF5I GGATG 2 cut(s) 595, 684
BstHHI GCGC 1 cut(s) 1730
BstKTI GATC 7 cut(s) 163, 664, 820, 988, 1076, 1229, 1558
BstMAI GTCTC 1 cut(s) 246
BstMBI GATC 7 cut(s) 160, 661, 817, 985, 1073, 1226, 1555
BstMWI GCNNNNNNNGC 7 cut(s) 20, 370, 431, 1429, 1544, 2063, 2125
BstNI CCWGG 4 cut(s) 754, 783, 903, 1622
BstSCI CCNGG 7 cut(s) 414, 562, 752, 781, 876, 901, 1620
BstSFI CTRYAG 1 cut(s) 196
BstSLI GKGCMC 2 cut(s) 846, 2006
BstV1I GCAGC 6 cut(s) 679, 1357, 1865, 2041, 2053, 2095
BstV2I GAAGAC 3 cut(s) 199, 1040, 1070
BstX2I RGATCY 3 cut(s) 661, 1073, 1226
BstYI RGATCY 3 cut(s) 661, 1073, 1226
Bsu15I ATCGAT 1 cut(s) 820
Bsu36I CCTNAGG 2 cut(s) 283, 572
BsuI GTATCC 1 cut(s) 570
BsuRI GGCC 9 cut(s) 34, 281, 364, 414, 844, 1107, 1318, 1620, 2004
BsuTUI ATCGAT 1 cut(s) 820
BtgZI GCGATG 2 cut(s) 1377, 2064
BtsCI GGATG 2 cut(s) 595, 684
BtsI GCAGTG 1 cut(s) 57
BtsIMutI CAGTG 4 cut(s) 57, 305, 330, 1158
Cac8I GCNNGC 1 cut(s) 300
CaiI CAGNNNCTG 1 cut(s) 1055
CfoI GCGC 1 cut(s) 1730
ClaI ATCGAT 1 cut(s) 820
CseI GACGC 1 cut(s) 547
CsiI ACCWGGT 1 cut(s) 752
Csp6I GTAC 3 cut(s) 215, 310, 1391
CviAII CATG 7 cut(s) 38, 531, 586, 836, 1559, 1682, 2159
CviQI GTAC 3 cut(s) 215, 310, 1391
DpnI GATC 7 cut(s) 162, 663, 819, 987, 1075, 1228, 1557
DpnII GATC 7 cut(s) 160, 661, 817, 985, 1073, 1226, 1555
EaeI YGGCCR 2 cut(s) 1105, 1618
Eam1104I CTCTTC 1 cut(s) 936
EarI CTCTTC 1 cut(s) 936
Ecl136II GAGCTC 1 cut(s) 1142
Eco130I CCWWGG 1 cut(s) 409
Eco147I AGGCCT 1 cut(s) 34
Eco24I GRGCYC 3 cut(s) 846, 1144, 2006
Eco31I GGTCTC 1 cut(s) 246
Eco47I GGWCC 3 cut(s) 593, 1464, 1624
Eco53kI GAGCTC 1 cut(s) 1142
Eco57I CTGAAG 6 cut(s) 204, 1207, 1314, 1332, 1569, 1998
Eco81I CCTNAGG 2 cut(s) 283, 572
EcoICRI GAGCTC 1 cut(s) 1142
EcoNI CCTNNNNNAGG 1 cut(s) 1640
EcoO109I RGGNCCY 4 cut(s) 843, 1464, 1624, 2002
EcoRI GAATTC 1 cut(s) 1750
EcoRII CCWGG 4 cut(s) 752, 781, 901, 1620
EcoT14I CCWWGG 1 cut(s) 409
EcoT22I ATGCAT 1 cut(s) 867
EcoT38I GRGCYC 3 cut(s) 846, 1144, 2006
ErhI CCWWGG 1 cut(s) 409
FaeI CATG 7 cut(s) 41, 534, 589, 839, 1562, 1685, 2162
FaqI GGGAC 2 cut(s) 455, 1610
FatI CATG 7 cut(s) 37, 530, 585, 835, 1558, 1681, 2158
FbaI TGATCA 1 cut(s) 1555
Fnu4HI GCNGC 7 cut(s) 15, 693, 1371, 1854, 2055, 2067, 2109
FokI GGATG 2 cut(s) 602, 691
FriOI GRGCYC 3 cut(s) 846, 1144, 2006
Fsp4HI GCNGC 7 cut(s) 15, 693, 1371, 1854, 2055, 2067, 2109
FspBI CTAG 7 cut(s) 299, 410, 893, 1026, 1448, 2027, 2129
GlaI GCGC 1 cut(s) 1729
GluI GCNGC 7 cut(s) 15, 693, 1371, 1854, 2055, 2067, 2109
GsaI CCCAGC 4 cut(s) 27, 1412, 1631, 2105
GsuI CTGGAG 1 cut(s) 1158
HaeIII GGCC 9 cut(s) 34, 281, 364, 414, 844, 1107, 1318, 1620, 2004
HapII CCGG 3 cut(s) 416, 564, 877
HgaI GACGC 1 cut(s) 547
HhaI GCGC 1 cut(s) 1730
Hin1II CATG 7 cut(s) 41, 534, 589, 839, 1562, 1685, 2162
Hin6I GCGC 1 cut(s) 1728
HinP1I GCGC 1 cut(s) 1728
HincII GTYRAC 4 cut(s) 337, 459, 1165, 1764
HindII GTYRAC 4 cut(s) 337, 459, 1165, 1764
HindIII AAGCTT 2 cut(s) 1536, 1821
HinfI GANTC 1 cut(s) 1154
HpaI GTTAAC 1 cut(s) 1764
HpaII CCGG 3 cut(s) 416, 564, 877
HphI GGTGA 3 cut(s) 299, 742, 950
Hpy166II GTNNAC 7 cut(s) 215, 337, 459, 1165, 1349, 1764, 2036
Hpy188I TCNGA 9 cut(s) 604, 704, 772, 1226, 1249, 1270, 1289, 1910, 1933
Hpy188III TCNNGA 9 cut(s) 164, 491, 893, 1056, 1137, 1473, 1613, 1700, 1881
Hpy8I GTNNAC 7 cut(s) 215, 337, 459, 1165, 1349, 1764, 2036
Hpy99I CGWCG 1 cut(s) 1791
HpyAV CCTTC 8 cut(s) 228, 549, 929, 1231, 1307, 1384, 1826, 1915
HpyCH4III ACNGT 7 cut(s) 309, 334, 1051, 1162, 2020, 2084, 2093
HpyCH4IV ACGT 3 cut(s) 9, 506, 1766
HpyF10VI GCNNNNNNNGC 7 cut(s) 20, 370, 431, 1429, 1544, 2063, 2125
HpySE526I ACGT 3 cut(s) 9, 506, 1766
Hsp92II CATG 7 cut(s) 41, 534, 589, 839, 1562, 1685, 2162
HspAI GCGC 1 cut(s) 1728
Ksp22I TGATCA 1 cut(s) 1555
KspAI GTTAAC 1 cut(s) 1764
Kzo9I GATC 7 cut(s) 160, 661, 817, 985, 1073, 1226, 1555
LmnI GCTCC 4 cut(s) 1018, 1139, 1717, 2023
Lsp1109I GCAGC 6 cut(s) 679, 1357, 1865, 2041, 2053, 2095
LweI GCATC 4 cut(s) 271, 679, 1684, 2041
MabI ACCWGGT 1 cut(s) 752
MaeI CTAG 7 cut(s) 299, 410, 893, 1026, 1448, 2027, 2129
MaeII ACGT 3 cut(s) 9, 506, 1766
MaeIII GTNAC 4 cut(s) 137, 387, 1045, 1259
MalI GATC 7 cut(s) 162, 663, 819, 987, 1075, 1228, 1557
MbiI CCGCTC 1 cut(s) 1868
MboI GATC 7 cut(s) 160, 661, 817, 985, 1073, 1226, 1555
MfeI CAATTG 1 cut(s) 1841
MflI RGATCY 3 cut(s) 661, 1073, 1226
MhlI GDGCHC 4 cut(s) 171, 846, 1144, 2006
MlsI TGGCCA 1 cut(s) 1620
MluNI TGGCCA 1 cut(s) 1620
MmeI TCCRAC 3 cut(s) 98, 515, 620
Mox20I TGGCCA 1 cut(s) 1620
Mph1103I ATGCAT 1 cut(s) 867
MroXI GAANNNNTTC 2 cut(s) 581, 743
MscI TGGCCA 1 cut(s) 1620
MseI TTAA 9 cut(s) 713, 1149, 1185, 1649, 1713, 1722, 1763, 2141, 2170
MslI CAYNNNNRTG 2 cut(s) 135, 1173
Msp20I TGGCCA 1 cut(s) 1620
MspI CCGG 3 cut(s) 416, 564, 877
MspR9I CCNGG 7 cut(s) 416, 564, 754, 783, 878, 903, 1622
MunI CAATTG 1 cut(s) 1841
MvaI CCWGG 4 cut(s) 754, 783, 903, 1622
MwoI GCNNNNNNNGC 7 cut(s) 20, 370, 431, 1429, 1544, 2063, 2125
NciI CCSGG 3 cut(s) 416, 564, 878
NdeII GATC 7 cut(s) 160, 661, 817, 985, 1073, 1226, 1555
NheI GCTAGC 1 cut(s) 298
NlaIII CATG 7 cut(s) 41, 534, 589, 839, 1562, 1685, 2162
NlaIV GGNNCC 9 cut(s) 43, 363, 610, 844, 1075, 1466, 1626, 2003, 2004
NmuCI GTSAC 3 cut(s) 137, 1045, 1259
NsiI ATGCAT 1 cut(s) 867
NspV TTCGAA 2 cut(s) 105, 1377
PceI AGGCCT 1 cut(s) 34
PdmI GAANNNNTTC 2 cut(s) 581, 743
PfeI GAWTC 1 cut(s) 1154
PflFI GACNNNGTC 1 cut(s) 467
PflMI CCANNNNNTGG 1 cut(s) 347
PfoI TCCNGGA 1 cut(s) 876
PkrI GCNGC 7 cut(s) 16, 694, 1372, 1855, 2056, 2068, 2110
PpuMI RGGWCCY 2 cut(s) 1464, 1624
PshBI ATTAAT 1 cut(s) 2141
Psp124BI GAGCTC 1 cut(s) 1144
Psp1406I AACGTT 2 cut(s) 506, 1766
Psp5II RGGWCCY 2 cut(s) 1464, 1624
Psp6I CCWGG 4 cut(s) 752, 781, 901, 1620
PspFI CCCAGC 4 cut(s) 23, 1408, 1627, 2101
PspGI CCWGG 4 cut(s) 752, 781, 901, 1620
PspN4I GGNNCC 9 cut(s) 43, 363, 610, 844, 1075, 1466, 1626, 2003, 2004
PspOMI GGGCCC 2 cut(s) 842, 2002
PspPPI RGGWCCY 2 cut(s) 1464, 1624
PstNI CAGNNNCTG 1 cut(s) 1055
PsuI RGATCY 3 cut(s) 661, 1073, 1226
PsyI GACNNNGTC 1 cut(s) 467
RsaI GTAC 3 cut(s) 216, 311, 1392
RsaNI GTAC 3 cut(s) 215, 310, 1391
RseI CAYNNNNRTG 2 cut(s) 135, 1173
SacI GAGCTC 1 cut(s) 1144
SaqAI TTAA 9 cut(s) 713, 1149, 1185, 1649, 1713, 1722, 1763, 2141, 2170
SatI GCNGC 7 cut(s) 15, 693, 1371, 1854, 2055, 2067, 2109
Sau3AI GATC 7 cut(s) 160, 661, 817, 985, 1073, 1226, 1555
ScrFI CCNGG 7 cut(s) 416, 564, 754, 783, 878, 903, 1622
SduI GDGCHC 4 cut(s) 171, 846, 1144, 2006
SexAI ACCWGGT 1 cut(s) 752
SfaNI GCATC 4 cut(s) 271, 679, 1684, 2041
SfcI CTRYAG 1 cut(s) 196
SfuI TTCGAA 2 cut(s) 105, 1377
SinI GGWCC 3 cut(s) 593, 1464, 1624
SmiMI CAYNNNNRTG 2 cut(s) 135, 1173
SmlI CTYRAG 2 cut(s) 1041, 1471
SmoI CTYRAG 2 cut(s) 1041, 1471
SseBI AGGCCT 1 cut(s) 34
SsiI CCGC 3 cut(s) 45, 695, 1868
SspI AATATT 1 cut(s) 1504
SspMI CTAG 7 cut(s) 299, 410, 893, 1026, 1448, 2027, 2129
SstI GAGCTC 1 cut(s) 1144
StuI AGGCCT 1 cut(s) 34
StyD4I CCNGG 7 cut(s) 414, 562, 752, 781, 876, 901, 1620
StyI CCWWGG 1 cut(s) 409
TaaI ACNGT 7 cut(s) 309, 334, 1051, 1162, 2020, 2084, 2093
TaiI ACGT 3 cut(s) 12, 509, 1769
TatI WGTACW 1 cut(s) 309
TfiI GAWTC 1 cut(s) 1154
Tru1I TTAA 9 cut(s) 713, 1149, 1185, 1649, 1713, 1722, 1763, 2141, 2170
Tru9I TTAA 9 cut(s) 713, 1149, 1185, 1649, 1713, 1722, 1763, 2141, 2170
TscAI CASTG 4 cut(s) 64, 312, 337, 1165
TseFI GTSAC 3 cut(s) 137, 1045, 1259
TseI GCWGC 7 cut(s) 14, 692, 1370, 1853, 2054, 2066, 2108
Tsp45I GTSAC 3 cut(s) 137, 1045, 1259
TspGWI ACGGA 1 cut(s) 1558
TspRI CASTG 4 cut(s) 64, 312, 337, 1165
Tth111I GACNNNGTC 1 cut(s) 467
Van91I CCANNNNNTGG 1 cut(s) 347
VpaK11BI GGWCC 3 cut(s) 593, 1464, 1624
VspI ATTAAT 1 cut(s) 2141
XagI CCTNNNNNAGG 1 cut(s) 1640
XapI RAATTY 4 cut(s) 715, 1120, 1750, 1875
XbaI TCTAGA 1 cut(s) 892
XmaJI CCTAGG 1 cut(s) 409
XmnI GAANNNNTTC 2 cut(s) 581, 743
XspI CTAG 7 cut(s) 299, 410, 893, 1026, 1448, 2027, 2129
Zsp2I ATGCAT 1 cut(s) 867
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.