RLG00000001376

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000063
Physical Location & Seq
Reverse (-)
14836943 .. 14839564
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001376

Sequence Viewer

Length: 1218 bp
ATGGCTAAGGAGATCTCAAAGCTGTATCGTCAACTGTTCGATCAATTTGAGATGAAAACATTCCTGCCTAGTTGCAAACCGACTCCTACTTTTAAACGTTGGTGGTCGGGTTACTCTAAGAAATTCTTCCAAGCAGACCTCAACTTCGCAAAAAGCCAAGTTCTACAAGGTGTTGTTGACGACCCAAATCGTCATATGGTTCACAAGAGAGCAAGGCCTGACCGAGATACAGACCTTGACGACACTGAGGTATCGGATCAAGAACAAGGGCCCTCTTTTGTGAATAGCCATGGCAAATCATCCTCCACTCCTAAGAGTTCAGCCTTTAAACGCAGTAAAACTTCTGATCAAGAGTTCTCTTCTTCTGTTGCTTTATCAAAAGATGCGGGTGGCAGCAATCGCACTGTAGAGATGTCCATCAACGAGGAAGACAACAGTGTCAGAGTTGGGGACACTGACAATGAGATCGTGCACCAAGCTCCTGAGCATGAGGGTTCTTCCGAGCCGGTCTCGAACGCATTCATCGAACTGCAGAGGACACTCGGCCCTCCTGAATATGTCACAATGAATAAAAATGCGATCCCACCCGCTCCTTTGCTGGCGCCTGACATGTTAGTCCTGCTGGACGAACTTAAAGACCAGAGCCCAAAGACGGTAAAGGTGGACAACGAGGAGACAAAAGCTGCAGCCGAGATTATCAACGACTTGGGCTGTAGAGACCTCTTGTTTTTAGTCATCAATGACAACTCATATGACCGTTTTAAAGAAGCAATAACTGATTTAATTTCAGCCAACCATTTCAGCCTCGAGAAGGTACGAGAAATAGAAGATCATCTTGTGAGAATGGATGCAAGTGTTTCCACCTACATTAAAGCTCTGGAAAAATGGGATGCTGGTCGGGCTCTTGAACAAAAATATGGTGACATCGTTATGCGCCAGTCCACTCGAGCTGCGCAGCTAATAGCAATGCACGAGAGCTATAACAAAGACGCTCAAGAGCTAGCGGAGTTGAGAGCTCGTGCTGATGTAGTCGAGAAGCGTATGGCCGCAACTACAGCCACCATGAATCGGGAACTTGCTGAACACAGACAAGAGCTTCAAACTTATTCACTACATCGCAAGGAAACCAACAAGTTTCTGGCTATCAAAGATTCTCTTGACCAGACAATGATAAAGAGTAGTGCCGATTGGATCGCGTTGAAGAAGATTTTATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

406

Amino Acids

45.9

Weight (kDa)

5.6

Isoelectric Point (pI)

43.4

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 437, 614
Acc16I TGCGCA 1 cut(s) 954
AccB1I GGYRCC 1 cut(s) 601
AccBSI CCGCTC 1 cut(s) 590
AccII CGCG 1 cut(s) 1196
AciI CCGC 4 cut(s) 386, 588, 1004, 1047
AclI AACGTT 1 cut(s) 97
AclWI GGATC 3 cut(s) 264, 574, 1199
AcoI YGGCCR 1 cut(s) 1044
AcsI RAATTY 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 602
AfaI GTAC 1 cut(s) 816
AfiI CCNNNNNNNGG 3 cut(s) 652, 811, 1068
AflIII ACRYGT 1 cut(s) 609
AgsI TTSAA 3 cut(s) 908, 1100, 1201
Alw21I GWGCWC 2 cut(s) 474, 1018
Alw26I GTCTC 3 cut(s) 514, 668, 711
Alw44I GTGCAC 1 cut(s) 470
AlwI GGATC 3 cut(s) 264, 574, 1199
Ama87I CYCGRG 2 cut(s) 806, 945
AoxI GGCC 4 cut(s) 215, 269, 544, 1044
ApaI GGGCCC 1 cut(s) 273
ApaLI GTGCAC 1 cut(s) 470
ApeKI GCWGC 5 cut(s) 393, 683, 686, 950, 955
ApoI RAATTY 1 cut(s) 122
ArsI GACNNNNNNTTYG 2 cut(s) 128, 160
Asp700I GAANNNNTTC 3 cut(s) 59, 125, 518
AspLEI GCGC 3 cut(s) 604, 936, 955
AspS9I GGNCC 3 cut(s) 269, 270, 545
AsuHPI GGTGA 1 cut(s) 932
AsuNHI GCTAGC 1 cut(s) 1000
AvaI CYCGRG 2 cut(s) 806, 945
BaeGI GKGCMC 2 cut(s) 273, 474
BaeI ACNNNNGTAYC 2 cut(s) 234, 267
BanI GGYRCC 1 cut(s) 601
BanII GRGCYC 4 cut(s) 273, 647, 904, 1018
BauI CACGAG 2 cut(s) 971, 1017
BbsI GAAGAC 1 cut(s) 435
Bbv12I GWGCWC 2 cut(s) 474, 1018
BbvI GCAGC 5 cut(s) 405, 670, 698, 937, 967
BccI CCATC 1 cut(s) 425
BclI TGATCA 1 cut(s) 346
BcoDI GTCTC 3 cut(s) 514, 668, 711
BfaI CTAG 2 cut(s) 69, 1001
BfmI CTRYAG 5 cut(s) 405, 530, 684, 712, 1053
BfoI RGCGCY 1 cut(s) 605
BglII AGATCT 1 cut(s) 12
BisI GCNGC 6 cut(s) 394, 684, 687, 951, 956, 1047
BlsI GCNGC 6 cut(s) 395, 685, 688, 952, 957, 1048
BmeT110I CYCGRG 2 cut(s) 806, 945
BmgT120I GGNCC 3 cut(s) 269, 270, 545
BmiI GGNNCC 2 cut(s) 271, 603
BmsI GCATC 3 cut(s) 373, 838, 880
BmtI GCTAGC 1 cut(s) 1004
BpiI GAAGAC 1 cut(s) 435
BplI GAGNNNNNCTC 2 cut(s) 494, 526
Bpu10I CCTNAGC 2 cut(s) 6, 483
BpuEI CTTGAG 1 cut(s) 978
BsaBI GATNNNNATC 1 cut(s) 416
BsaHI GRCGYC 1 cut(s) 602
BsaI GGTCTC 2 cut(s) 514, 711
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 3 cut(s) 652, 811, 1068
Bse118I RCCGGY 1 cut(s) 505
Bse1I ACTGG 1 cut(s) 937
Bse3DI GCAATG 1 cut(s) 972
Bse8I GATNNNNATC 1 cut(s) 416
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 3 cut(s) 299, 853, 895
BseJI GATNNNNATC 1 cut(s) 416
BseLI CCNNNNNNNGG 3 cut(s) 652, 811, 1068
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 2 cut(s) 237, 474
BseNI ACTGG 1 cut(s) 937
BseRI GAGGAG 1 cut(s) 686
BseSI GKGCMC 2 cut(s) 273, 474
BseXI GCAGC 5 cut(s) 405, 670, 698, 937, 967
Bsh1236I CGCG 1 cut(s) 1196
BshFI GGCC 4 cut(s) 217, 271, 546, 1046
BshNI GGYRCC 1 cut(s) 601
BsiHKAI GWGCWC 2 cut(s) 474, 1018
BsiHKCI CYCGRG 2 cut(s) 806, 945
BsiSI CCGG 1 cut(s) 506
BslFI GGGAC 1 cut(s) 464
BslI CCNNNNNNNGG 3 cut(s) 652, 811, 1068
BsmAI GTCTC 3 cut(s) 514, 668, 711
BsmFI GGGAC 1 cut(s) 464
BsmI GAATGC 1 cut(s) 518
BsnI GGCC 4 cut(s) 217, 271, 546, 1046
Bso31I GGTCTC 2 cut(s) 514, 711
BsoBI CYCGRG 2 cut(s) 806, 945
Bsp120I GGGCCC 1 cut(s) 269
Bsp1286I GDGCHC 5 cut(s) 273, 474, 647, 904, 1018
Bsp143I GATC 8 cut(s) 12, 40, 256, 346, 465, 579, 829, 1191
Bsp19I CCATGG 1 cut(s) 289
BspACI CCGC 4 cut(s) 386, 588, 1004, 1047
BspANI GGCC 4 cut(s) 217, 271, 546, 1046
BspCNI CTCAG 2 cut(s) 238, 475
BspFNI CGCG 1 cut(s) 1196
BspLI GGNNCC 2 cut(s) 271, 603
BspMAI CTGCAG 2 cut(s) 534, 688
BspOI GCTAGC 1 cut(s) 1004
BspPI GGATC 3 cut(s) 264, 574, 1199
BspT107I GGYRCC 1 cut(s) 601
BspTNI GGTCTC 2 cut(s) 514, 711
BsrBI CCGCTC 1 cut(s) 590
BsrDI GCAATG 1 cut(s) 972
BsrFI RCCGGY 1 cut(s) 505
BsrI ACTGG 1 cut(s) 937
BssAI RCCGGY 1 cut(s) 505
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 8 cut(s) 12, 40, 256, 346, 465, 579, 829, 1191
BssNI GRCGYC 1 cut(s) 602
BssSI CACGAG 2 cut(s) 971, 1017
BssT1I CCWWGG 1 cut(s) 289
Bst2BI CACGAG 2 cut(s) 971, 1017
Bst4CI ACNGT 5 cut(s) 36, 406, 437, 655, 758
Bst6I CTCTTC 1 cut(s) 364
BstACI GRCGYC 1 cut(s) 602
BstC8I GCNNGC 2 cut(s) 600, 1002
BstDEI CTNAG 5 cut(s) 6, 117, 246, 312, 483
BstDSI CCRYGG 1 cut(s) 289
BstENI CCTNNNNNAGG 1 cut(s) 809
BstF5I GGATG 3 cut(s) 299, 853, 895
BstFNI CGCG 1 cut(s) 1196
BstH2I RGCGCY 1 cut(s) 605
BstHHI GCGC 3 cut(s) 604, 936, 955
BstKTI GATC 8 cut(s) 15, 43, 259, 349, 468, 582, 832, 1194
BstMAI GTCTC 3 cut(s) 514, 668, 711
BstMBI GATC 8 cut(s) 12, 40, 256, 346, 465, 579, 829, 1191
BstMWI GCNNNNNNNGC 3 cut(s) 399, 899, 1055
BstNSI RCATGY 1 cut(s) 613
BstSFI CTRYAG 5 cut(s) 405, 530, 684, 712, 1053
BstSLI GKGCMC 2 cut(s) 273, 474
BstUI CGCG 1 cut(s) 1196
BstV1I GCAGC 5 cut(s) 405, 670, 698, 937, 967
BstV2I GAAGAC 1 cut(s) 435
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BsuRI GGCC 4 cut(s) 217, 271, 546, 1046
BtgI CCRYGG 1 cut(s) 289
BtgZI GCGATG 1 cut(s) 1100
BtsCI GGATG 3 cut(s) 299, 853, 895
BtsIMutI CAGTG 4 cut(s) 243, 402, 442, 453
Cac8I GCNNGC 2 cut(s) 600, 1002
CfoI GCGC 3 cut(s) 604, 936, 955
Cfr10I RCCGGY 1 cut(s) 505
Cfr13I GGNCC 3 cut(s) 269, 270, 545
CseI GACGC 1 cut(s) 998
Csp6I GTAC 1 cut(s) 815
CviAII CATG 4 cut(s) 290, 488, 610, 1063
CviQI GTAC 1 cut(s) 815
DdeI CTNAG 5 cut(s) 6, 117, 246, 312, 483
DinI GGCGCC 1 cut(s) 603
DpnI GATC 8 cut(s) 14, 42, 258, 348, 467, 581, 831, 1193
DpnII GATC 8 cut(s) 12, 40, 256, 346, 465, 579, 829, 1191
DraI TTTAAA 3 cut(s) 94, 328, 763
DrdI GACNNNNNNGTC 2 cut(s) 437, 614
DseDI GACNNNNNNGTC 2 cut(s) 437, 614
EaeI YGGCCR 1 cut(s) 1044
Eam1104I CTCTTC 1 cut(s) 364
EarI CTCTTC 1 cut(s) 364
Ecl136II GAGCTC 1 cut(s) 1016
Eco130I CCWWGG 1 cut(s) 289
Eco147I AGGCCT 1 cut(s) 217
Eco24I GRGCYC 4 cut(s) 273, 647, 904, 1018
Eco31I GGTCTC 2 cut(s) 514, 711
Eco53kI GAGCTC 1 cut(s) 1016
Eco88I CYCGRG 2 cut(s) 806, 945
EcoICRI GAGCTC 1 cut(s) 1016
EcoNI CCTNNNNNAGG 1 cut(s) 809
EcoO109I RGGNCCY 2 cut(s) 269, 270
EcoT14I CCWWGG 1 cut(s) 289
EcoT38I GRGCYC 4 cut(s) 273, 647, 904, 1018
EgeI GGCGCC 1 cut(s) 603
EheI GGCGCC 1 cut(s) 603
ErhI CCWWGG 1 cut(s) 289
FaeI CATG 4 cut(s) 293, 491, 613, 1066
FalI AAGNNNNNCTT 6 cut(s) 110, 142, 819, 851, 1140, 1172
FaqI GGGAC 1 cut(s) 464
FatI CATG 4 cut(s) 289, 487, 609, 1062
FauI CCCGC 2 cut(s) 379, 595
FauNDI CATATG 2 cut(s) 195, 751
FbaI TGATCA 1 cut(s) 346
Fnu4HI GCNGC 6 cut(s) 394, 684, 687, 951, 956, 1047
FokI GGATG 3 cut(s) 286, 860, 902
FriOI GRGCYC 4 cut(s) 273, 647, 904, 1018
Fsp4HI GCNGC 6 cut(s) 394, 684, 687, 951, 956, 1047
FspBI CTAG 2 cut(s) 69, 1001
FspI TGCGCA 1 cut(s) 954
GlaI GCGC 3 cut(s) 603, 935, 954
GluI GCNGC 6 cut(s) 394, 684, 687, 951, 956, 1047
HaeII RGCGCY 1 cut(s) 605
HaeIII GGCC 4 cut(s) 217, 271, 546, 1046
HapII CCGG 1 cut(s) 506
HgaI GACGC 1 cut(s) 998
HhaI GCGC 3 cut(s) 604, 936, 955
Hin1I GRCGYC 1 cut(s) 602
Hin1II CATG 4 cut(s) 293, 491, 613, 1066
Hin6I GCGC 3 cut(s) 602, 934, 953
HinP1I GCGC 3 cut(s) 602, 934, 953
HincII GTYRAC 2 cut(s) 32, 178
HindII GTYRAC 2 cut(s) 32, 178
HinfI GANTC 3 cut(s) 82, 1066, 1151
HpaII CCGG 1 cut(s) 506
HphI GGTGA 1 cut(s) 932
Hpy166II GTNNAC 6 cut(s) 32, 178, 202, 472, 664, 942
Hpy188I TCNGA 4 cut(s) 256, 346, 443, 502
Hpy8I GTNNAC 6 cut(s) 32, 178, 202, 472, 664, 942
HpyAV CCTTC 1 cut(s) 805
HpyCH4III ACNGT 5 cut(s) 36, 406, 437, 655, 758
HpyCH4IV ACGT 1 cut(s) 97
HpyCH4V TGCA 6 cut(s) 75, 472, 532, 686, 851, 970
HpyF10VI GCNNNNNNNGC 3 cut(s) 399, 899, 1055
HpyF3I CTNAG 5 cut(s) 6, 117, 246, 312, 483
HpySE526I ACGT 1 cut(s) 97
Hsp92I GRCGYC 1 cut(s) 602
Hsp92II CATG 4 cut(s) 293, 491, 613, 1066
HspAI GCGC 3 cut(s) 602, 934, 953
KasI GGCGCC 1 cut(s) 601
Ksp22I TGATCA 1 cut(s) 346
Kzo9I GATC 8 cut(s) 12, 40, 256, 346, 465, 579, 829, 1191
LmnI GCTCC 2 cut(s) 484, 595
Lsp1109I GCAGC 5 cut(s) 405, 670, 698, 937, 967
LweI GCATC 3 cut(s) 373, 838, 880
MaeI CTAG 2 cut(s) 69, 1001
MaeII ACGT 1 cut(s) 97
MaeIII GTNAC 3 cut(s) 110, 559, 920
MalI GATC 8 cut(s) 14, 42, 258, 348, 467, 581, 831, 1193
MbiI CCGCTC 1 cut(s) 590
MboI GATC 8 cut(s) 12, 40, 256, 346, 465, 579, 829, 1191
MboII GAAGA 8 cut(s) 118, 351, 354, 440, 489, 839, 1213, 1216
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 5 cut(s) 273, 474, 647, 904, 1018
MluCI AATT 3 cut(s) 44, 122, 783
Mly113I GGCGCC 1 cut(s) 602
MlyI GAGTC 1 cut(s) 76
MroXI GAANNNNTTC 3 cut(s) 59, 125, 518
MseI TTAA 6 cut(s) 93, 327, 633, 762, 782, 870
MslI CAYNNNNRTG 1 cut(s) 929
MspI CCGG 1 cut(s) 506
Mva1269I GAATGC 1 cut(s) 518
MvnI CGCG 1 cut(s) 1196
MwoI GCNNNNNNNGC 3 cut(s) 399, 899, 1055
NarI GGCGCC 1 cut(s) 602
NcoI CCATGG 1 cut(s) 289
NdeI CATATG 2 cut(s) 195, 751
NdeII GATC 8 cut(s) 12, 40, 256, 346, 465, 579, 829, 1191
NheI GCTAGC 1 cut(s) 1000
NlaIII CATG 4 cut(s) 293, 491, 613, 1066
NlaIV GGNNCC 2 cut(s) 271, 603
NmeAIII GCCGAG 2 cut(s) 522, 715
NmuCI GTSAC 2 cut(s) 559, 920
NsbI TGCGCA 1 cut(s) 954
NspI RCATGY 1 cut(s) 613
PaeR7I CTCGAG 2 cut(s) 806, 945
PceI AGGCCT 1 cut(s) 217
PciI ACATGT 1 cut(s) 609
PcsI WCGNNNNNNNCGW 1 cut(s) 522
PctI GAATGC 1 cut(s) 518
PdmI GAANNNNTTC 3 cut(s) 59, 125, 518
PfeI GAWTC 2 cut(s) 1066, 1151
PkrI GCNGC 6 cut(s) 395, 685, 688, 952, 957, 1048
PleI GAGTC 1 cut(s) 76
PluTI GGCGCC 1 cut(s) 605
PpsI GAGTC 1 cut(s) 76
PscI ACATGT 1 cut(s) 609
Psp124BI GAGCTC 1 cut(s) 1018
Psp1406I AACGTT 1 cut(s) 97
PspN4I GGNNCC 2 cut(s) 271, 603
PspOMI GGGCCC 1 cut(s) 269
PspPI GGNCC 3 cut(s) 269, 270, 545
PspXI VCTCGAGB 1 cut(s) 945
PstI CTGCAG 2 cut(s) 534, 688
PsuI RGATCY 1 cut(s) 12
RsaI GTAC 1 cut(s) 816
RsaNI GTAC 1 cut(s) 815
RseI CAYNNNNRTG 1 cut(s) 929
SacI GAGCTC 1 cut(s) 1018
SaqAI TTAA 6 cut(s) 93, 327, 633, 762, 782, 870
SatI GCNGC 6 cut(s) 394, 684, 687, 951, 956, 1047
Sau3AI GATC 8 cut(s) 12, 40, 256, 346, 465, 579, 829, 1191
Sau96I GGNCC 3 cut(s) 269, 270, 545
SchI GAGTC 1 cut(s) 76
SduI GDGCHC 5 cut(s) 273, 474, 647, 904, 1018
SfaNI GCATC 3 cut(s) 373, 838, 880
SfcI CTRYAG 5 cut(s) 405, 530, 684, 712, 1053
SfoI GGCGCC 1 cut(s) 603
Sfr274I CTCGAG 2 cut(s) 806, 945
SlaI CTCGAG 2 cut(s) 806, 945
SmiMI CAYNNNNRTG 1 cut(s) 929
SmlI CTYRAG 3 cut(s) 806, 945, 993
SmoI CTYRAG 3 cut(s) 806, 945, 993
Sse9I AATT 3 cut(s) 44, 122, 783
SseBI AGGCCT 1 cut(s) 217
SsiI CCGC 4 cut(s) 386, 588, 1004, 1047
SspDI GGCGCC 1 cut(s) 601
SspMI CTAG 2 cut(s) 69, 1001
SstI GAGCTC 1 cut(s) 1018
StuI AGGCCT 1 cut(s) 217
StyI CCWWGG 1 cut(s) 289
TaaI ACNGT 5 cut(s) 36, 406, 437, 655, 758
TaiI ACGT 1 cut(s) 100
TaqI TCGA 6 cut(s) 39, 512, 525, 807, 946, 1032
TaqII GACCGA 1 cut(s) 237
TasI AATT 3 cut(s) 44, 122, 783
TauI GCSGC 1 cut(s) 1049
TfiI GAWTC 2 cut(s) 1066, 1151
Tru1I TTAA 6 cut(s) 93, 327, 633, 762, 782, 870
Tru9I TTAA 6 cut(s) 93, 327, 633, 762, 782, 870
TscAI CASTG 4 cut(s) 250, 409, 442, 460
TseFI GTSAC 2 cut(s) 559, 920
TseI GCWGC 5 cut(s) 393, 683, 686, 950, 955
Tsp45I GTSAC 2 cut(s) 559, 920
TspDTI ATGAA 4 cut(s) 68, 511, 581, 1079
TspRI CASTG 4 cut(s) 250, 409, 442, 460
VneI GTGCAC 1 cut(s) 470
XagI CCTNNNNNAGG 1 cut(s) 809
XapI RAATTY 1 cut(s) 122
XceI RCATGY 1 cut(s) 613
XcmI CCANNNNNNNNNTGG 1 cut(s) 1135
XhoI CTCGAG 2 cut(s) 806, 945
XmnI GAANNNNTTC 3 cut(s) 59, 125, 518
XspI CTAG 2 cut(s) 69, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.