Rh5AG126300

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000063
Physical Location & Seq
Forward (+)
11891570 .. 11895937
4368 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG126300.1

Sequence Viewer

Length: 2565 bp
ATGGCGGAACTGTCCAAATTGACCGCACTGCGGTTCAAAAACAAAATGGACGACATTACTAACCATCTGGATCGCACGTACAGTGCAACAGATTCGGTGATTTCTGTTAATTGTGACAAAAGTGTCGAGCTTGGCCCTTGTTGGCCTAAGATTCCCCCTGCTTCTGTTCAAGACTTACTCAAGGATGAGCCTTCAAGGCTTGTTCCGGTCCACTGTCGTCGAGGTGAAGAAATTTCATGGAATGATTGGTCGGATAAGCCATTCCCAAGTTGGCCAACCCACGATGAAGCCTGGACTACCTGGGTCGAAAAGATGCTTCCTTATTACGGTGATCACTGGAAGAAGGCCAACATCTACGACCCAATAATGCTCTCCGCCAAGCGCTTCTTCCCCGAAAAGGCTCTCCTCAGCGCTGCGTTTTGCTTTTGGAACTCATCATCCAACACTATGGACTTGCCTCTCGGGATGATGAGTGTGAGTCTGCTTGACGTTGCTGCCATTGCTGGGTTTAGGCCTCATGGCGCCGCTTATGACTGCACTGCTCCGTTGAAGCCCAAAACCAAGTTTAGGTGTGGTCGGCACTTTGAATATGGAAGTTGGATAGACTATCATAATAGTGACAAAAGCAACAAAGTTGTCGATCAAGAGCACATAGCGTTCCTCCTCTACTGGCTCTGTAGGTATGTCTTCTGTGTACCTTCAGGGATTAGTAAAGAGTGGTCTCATTTGGCAGAAGTTTTGCATCGAGGAACTGATGTGGCCTTAGGTGAGTTAGTGCTAGCCTCACTGTACAGGGGTTTGCAGAAAATCACTGTCAACCCATTTGATGGCAAAGCTGAGGGGCCACTTTGGCTGTTCCAAATGTGGTTACAGATTTACTTCCCAGACCTAGGCCCGGTTAGTGCATTTCCTGCCGATGAGGTTATGGGGGTTAGGTTGACAGACCAAGTCCCAAAACCACACTCCCCTCGTGATTGCTTCGTAACGTTGTGGAGTTTGAAATCAAACCCATGTTGGACGCACACCTTGACGAGAAGGTATCCCGGTTTCCTAAGGAATAGGTTCATGGATGGTCCAACCTCTGATGGTGCCTTAGATGAGGAAATACAGGCTGTGCTAACGAGTGTGGTGGTGCAGAGAGATCTGCTGTATGGAGGGATGAAAAATGGTAGATATTATGGAGTCCAGGCCGAATTTTATGGCCCGAACCATTTCAGTAGGCAGTTTGGTTGCCTACAAGGAATTCCTCACTCTGGTCATAAAATCGTTAATTGTTATACCTCATGGAGGGATGTACTAAAAGATGCTGCGGAAATCAGAGGCGTGTTAAATTCCAGTCGTTCCACAAAGTTGAAACCATTCCTCACCAGGTATGTGCTAACCTCTGAAACTACCCCAGGCTTTGACAAATGGTGGCATAGTCAAACCAAAGATCGATTTTCGGTAGAACATGATGGGCCCGTTGCTATCTTATATATGCATTGTCCATTCCGGGATAGCCATCATCTAGAAGTTCCAGGCTTTTCCCTTGCTGATGGAGAAAGGGAAGAAGGTGAAGAGGGAGAAGCTAAAGTTGAAAGCCCTCTCCCTACCGACAAGAATCGAAAGAGGAAAGGCAACACAAATGCTCCAAAATCAGCTAGGCAGAAGACTACTCAAGTCACAGTATCTGGAATGAAGACAAATGGATCCAATAATGAAGAAGCAGAGGAAATTGATGGCCGTCATACCCTGAATGTTGATGGCTTGTCTGGAGCTCAAATTAAGGAATCCACAGTTGACCACCAAAATGCTGTTGTTAAGCCAAAACATATAACTTCAACTTCTAAAAATACCTTCAGATCTATGAAAAAGCTGAGGTCAGATTTTTCAAGTGACACCTCCGAAAACGCTGATAACATCGGAACTGAAGAACCTGAACAGACTGAAGGGCCATTGATGGGAACTGGGGAGTTAGGAAGTAAACAAATGTATAGCGATGGTGCTGCCTTCGAAACTGCCCCCGTACTTACCAGTATGCACCCAGCTCAAAGTGAGCCAACCACGCCAGTTCAAGGATTACTAGACGGCAATGTGAGGACCCTCTCAAGAGAGGAAAAGTTGAAAAAGTTTGAAAATATTGAAAATAGTGTGGCAAACTCATCTGTCGAAGCTTCCAAAGCTGAAGATGATCATGCTTATTCCGTTATTGACGATGTGGTGGTTCGAGGCACGAGGGCGATTTTTCACGATGGCCAGGTCCCAGCATACCTAAGAGAGGCATTAAATTATGTTCGAGGCAGAAGTCGGCTAAGCCATGTTTTGATTGATGCTCTTGATGAGTATTTTAAGGAGCTTAATTGCGCCCAGACGAAAATGACTATGAATTCCAATAAGTTAACGTTGCTCGAAGATGAAGTTCGACGAGATAAGGACATCAGGGATAAGCTGGATAAAGCTTCAAATGAAGGAAAGCAATTGCAAATTGCAGCAATACAAAGAGCGGAGGAAATTTCTCGACTTGATGAAGAAATAAAGGTACTTAAAGCAGAGAGAGGAGGAAGAGCGTATGATGGCACTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

854

Amino Acids

96.25

Weight (kDa)

6.22

Isoelectric Point (pI)

40.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 118 - 423 2.4e-29 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 122
AccB1I GGYRCC 2 cut(s) 521, 1088
AccB7I CCANNNNNTGG 1 cut(s) 827
AccBSI CCGCTC 1 cut(s) 2483
AciI CCGC 7 cut(s) 5, 24, 31, 375, 525, 1310, 2483
AclI AACGTT 2 cut(s) 986, 2381
AclWI GGATC 3 cut(s) 78, 1683, 1696
AcoI YGGCCR 3 cut(s) 272, 1720, 2233
AcsI RAATTY 6 cut(s) 231, 1193, 1242, 1330, 2365, 2490
AcuI CTGAAG 5 cut(s) 684, 1822, 1929, 1947, 2184
AcyI GRCGYC 1 cut(s) 522
AfaI GTAC 6 cut(s) 80, 696, 791, 1296, 2007, 2520
AfeI AGCGCT 2 cut(s) 383, 412
AjnI CCWGG 7 cut(s) 290, 299, 1185, 1367, 1396, 1516, 2235
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AloI GAACNNNNNNTCC 2 cut(s) 422, 454
Alw21I GWGCWC 2 cut(s) 651, 1759
Alw26I GTCTC 1 cut(s) 726
AlwI GGATC 3 cut(s) 78, 1683, 1696
AlwNI CAGNNNCTG 1 cut(s) 1670
Ama87I CYCGRG 1 cut(s) 461
Aor51HI AGCGCT 2 cut(s) 383, 412
ApaI GGGCCC 1 cut(s) 1461
ApeKI GCWGC 5 cut(s) 413, 494, 1307, 1985, 2468
ApoI RAATTY 6 cut(s) 231, 1193, 1242, 1330, 2365, 2490
Asp700I GAANNNNTTC 3 cut(s) 1061, 1211, 1358
AspA2I CCTAGG 1 cut(s) 889
AspLEI GCGC 4 cut(s) 384, 413, 524, 2345
AsuC2I CCSGG 3 cut(s) 896, 1044, 1493
AsuHPI GGTGA 6 cut(s) 109, 236, 341, 779, 1357, 1565
AsuII TTCGAA 1 cut(s) 1992
AsuNHI GCTAGC 1 cut(s) 778
AvaI CYCGRG 1 cut(s) 461
AvaII GGWCC 4 cut(s) 208, 1073, 2079, 2239
AvrII CCTAGG 1 cut(s) 889
AxyI CCTNAGG 2 cut(s) 763, 1052
BaeGI GKGCMC 1 cut(s) 1461
BalI TGGCCA 2 cut(s) 274, 2235
BamHI GGATCC 1 cut(s) 1688
BanI GGYRCC 2 cut(s) 521, 1088
BanII GRGCYC 2 cut(s) 1461, 1759
BauI CACGAG 2 cut(s) 969, 2212
BbsI GAAGAC 3 cut(s) 679, 1655, 1685
Bbv12I GWGCWC 2 cut(s) 651, 1759
BbvCI CCTCAGC 3 cut(s) 407, 837, 1856
BbvI GCAGC 5 cut(s) 400, 481, 1294, 1972, 2480
BceAI ACGGC 2 cut(s) 1707, 2083
BcgI CGANNNNNNTGC 4 cut(s) 75, 109, 1967, 2001
BciT130I CCWGG 7 cut(s) 292, 301, 1187, 1369, 1398, 1518, 2237
BciVI GTATCC 1 cut(s) 1050
BclI TGATCA 2 cut(s) 331, 2170
BcnI CCSGG 3 cut(s) 896, 1044, 1493
BcoDI GTCTC 1 cut(s) 726
BfaI CTAG 6 cut(s) 779, 890, 1508, 1641, 2063, 2559
BfmI CTRYAG 1 cut(s) 676
BfoI RGCGCY 3 cut(s) 385, 414, 525
BfuI GTATCC 1 cut(s) 1050
BglI GCCNNNNNGGC 2 cut(s) 196, 850
BglII AGATCT 2 cut(s) 1141, 1841
BisI GCNGC 6 cut(s) 414, 495, 525, 1308, 1986, 2469
BlnI CCTAGG 1 cut(s) 889
BlpI GCTNAGC 1 cut(s) 2291
BlsI GCNGC 6 cut(s) 415, 496, 526, 1309, 1987, 2470
Bme18I GGWCC 4 cut(s) 208, 1073, 2079, 2239
BmeT110I CYCGRG 1 cut(s) 461
BmiI GGNNCC 7 cut(s) 523, 843, 1090, 1459, 1690, 2081, 2241
BmrI ACTGGG 1 cut(s) 1956
BmsI GCATC 4 cut(s) 303, 751, 1294, 2299
BmtI GCTAGC 1 cut(s) 782
BmuI ACTGGG 1 cut(s) 1956
BpiI GAAGAC 3 cut(s) 679, 1655, 1685
BpmI CTGGAG 1 cut(s) 1773
Bpu10I CCTNAGC 3 cut(s) 407, 837, 1856
Bpu1102I GCTNAGC 1 cut(s) 2291
Bpu14I TTCGAA 1 cut(s) 1992
BpuEI CTTGAG 3 cut(s) 164, 1641, 2071
BpuMI CCSGG 3 cut(s) 896, 1044, 1493
Bsa29I ATCGAT 1 cut(s) 1435
BsaAI YACGTR 1 cut(s) 78
BsaBI GATNNNNATC 1 cut(s) 1500
BsaHI GRCGYC 1 cut(s) 522
BsaI GGTCTC 1 cut(s) 726
BsaJI CCNNGG 3 cut(s) 300, 889, 1396
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 1612, 1642
Bse1I ACTGG 6 cut(s) 341, 674, 1335, 1951, 2013, 2048
Bse21I CCTNAGG 2 cut(s) 763, 1052
Bse3DI GCAATG 2 cut(s) 498, 2077
Bse8I GATNNNNATC 1 cut(s) 1500
BseBI CCWGG 7 cut(s) 292, 301, 1187, 1369, 1398, 1518, 2237
BseCI ATCGAT 1 cut(s) 1435
BseDI CCNNGG 3 cut(s) 300, 889, 1396
BseGI GGATG 6 cut(s) 190, 437, 471, 1075, 1164, 1297
BseJI GATNNNNATC 1 cut(s) 1500
BseMI GCAATG 2 cut(s) 498, 2077
BseMII CTCAG 3 cut(s) 421, 828, 1847
BseNI ACTGG 6 cut(s) 341, 674, 1335, 1951, 2013, 2048
BseRI GAGGAG 3 cut(s) 395, 653, 2550
BseSI GKGCMC 1 cut(s) 1461
BseXI GCAGC 5 cut(s) 400, 481, 1294, 1972, 2480
BseYI CCCAGC 3 cut(s) 503, 2023, 2242
BsgI GTGCAG 2 cut(s) 520, 1154
BshNI GGYRCC 2 cut(s) 521, 1088
BshVI ATCGAT 1 cut(s) 1435
BsiHKAI GWGCWC 2 cut(s) 651, 1759
BsiHKCI CYCGRG 1 cut(s) 461
BsiSI CCGG 4 cut(s) 206, 896, 1044, 1492
BslFI GGGAC 2 cut(s) 935, 2225
BsmAI GTCTC 1 cut(s) 726
BsmFI GGGAC 2 cut(s) 935, 2225
Bso31I GGTCTC 1 cut(s) 726
BsoBI CYCGRG 1 cut(s) 461
Bsp119I TTCGAA 1 cut(s) 1992
Bsp120I GGGCCC 1 cut(s) 1457
Bsp1286I GDGCHC 3 cut(s) 651, 1461, 1759
Bsp1407I TGTACA 1 cut(s) 789
Bsp143I GATC 8 cut(s) 70, 331, 640, 1141, 1432, 1688, 1841, 2170
Bsp1720I GCTNAGC 1 cut(s) 2291
BspACI CCGC 7 cut(s) 5, 24, 31, 375, 525, 1310, 2483
BspCNI CTCAG 3 cut(s) 420, 829, 1848
BspDI ATCGAT 1 cut(s) 1435
BspLI GGNNCC 7 cut(s) 523, 843, 1090, 1459, 1690, 2081, 2241
BspOI GCTAGC 1 cut(s) 782
BspPI GGATC 3 cut(s) 78, 1683, 1696
BspQI GCTCTTC 1 cut(s) 2536
BspT104I TTCGAA 1 cut(s) 1992
BspT107I GGYRCC 2 cut(s) 521, 1088
BspTNI GGTCTC 1 cut(s) 726
BsrBI CCGCTC 1 cut(s) 2483
BsrDI GCAATG 2 cut(s) 498, 2077
BsrGI TGTACA 1 cut(s) 789
BsrI ACTGG 6 cut(s) 341, 674, 1335, 1951, 2013, 2048
BssECI CCNNGG 3 cut(s) 300, 889, 1396
BssMI GATC 8 cut(s) 70, 331, 640, 1141, 1432, 1688, 1841, 2170
BssNI GRCGYC 1 cut(s) 522
BssSI CACGAG 2 cut(s) 969, 2212
BssT1I CCWWGG 1 cut(s) 889
Bst2BI CACGAG 2 cut(s) 969, 2212
Bst2UI CCWGG 7 cut(s) 292, 301, 1187, 1369, 1398, 1518, 2237
Bst4CI ACNGT 8 cut(s) 12, 83, 215, 329, 789, 814, 1666, 1777
Bst6I CTCTTC 2 cut(s) 1551, 2536
BstACI GRCGYC 1 cut(s) 522
BstAPI GCANNNNNTGC 1 cut(s) 911
BstAUI TGTACA 1 cut(s) 789
BstBAI YACGTR 1 cut(s) 78
BstBI TTCGAA 1 cut(s) 1992
BstC8I GCNNGC 1 cut(s) 780
BstDEI CTNAG 9 cut(s) 147, 407, 763, 837, 1052, 1093, 1856, 2252, 2291
BstENI CCTNNNNNAGG 2 cut(s) 1285, 2255
BstF5I GGATG 6 cut(s) 190, 437, 471, 1075, 1164, 1297
BstH2I RGCGCY 3 cut(s) 385, 414, 525
BstHHI GCGC 4 cut(s) 384, 413, 524, 2345
BstKTI GATC 8 cut(s) 73, 334, 643, 1144, 1435, 1691, 1844, 2173
BstMAI GTCTC 1 cut(s) 726
BstMBI GATC 8 cut(s) 70, 331, 640, 1141, 1432, 1688, 1841, 2170
BstMWI GCNNNNNNNGC 6 cut(s) 196, 500, 850, 911, 2044, 2159
BstNI CCWGG 7 cut(s) 292, 301, 1187, 1369, 1398, 1518, 2237
BstSFI CTRYAG 1 cut(s) 676
BstSLI GKGCMC 1 cut(s) 1461
BstV1I GCAGC 5 cut(s) 400, 481, 1294, 1972, 2480
BstV2I GAAGAC 3 cut(s) 679, 1655, 1685
BstX2I RGATCY 3 cut(s) 1141, 1688, 1841
BstXI CCANNNNNNTGG 1 cut(s) 448
BstYI RGATCY 3 cut(s) 1141, 1688, 1841
Bsu15I ATCGAT 1 cut(s) 1435
Bsu36I CCTNAGG 2 cut(s) 763, 1052
BsuI GTATCC 1 cut(s) 1050
BsuTUI ATCGAT 1 cut(s) 1435
BtgZI GCGATG 1 cut(s) 1992
BtsCI GGATG 6 cut(s) 190, 437, 471, 1075, 1164, 1297
BtsI GCAGTG 2 cut(s) 26, 537
BtsIMutI CAGTG 7 cut(s) 26, 88, 211, 334, 537, 785, 810
Cac8I GCNNGC 1 cut(s) 780
CaiI CAGNNNCTG 1 cut(s) 1670
CfoI GCGC 4 cut(s) 384, 413, 524, 2345
ClaI ATCGAT 1 cut(s) 1435
CseI GACGC 1 cut(s) 1027
CsiI ACCWGGT 1 cut(s) 1367
Csp6I GTAC 6 cut(s) 79, 695, 790, 1295, 2006, 2519
CviAII CATG 8 cut(s) 237, 518, 1011, 1066, 1284, 1451, 2174, 2297
CviQI GTAC 6 cut(s) 79, 695, 790, 1295, 2006, 2519
DdeI CTNAG 9 cut(s) 147, 407, 763, 837, 1052, 1093, 1856, 2252, 2291
DinI GGCGCC 1 cut(s) 523
DpnI GATC 8 cut(s) 72, 333, 642, 1143, 1434, 1690, 1843, 2172
DpnII GATC 8 cut(s) 70, 331, 640, 1141, 1432, 1688, 1841, 2170
DrdI GACNNNNNNGTC 1 cut(s) 122
DseDI GACNNNNNNGTC 1 cut(s) 122
EaeI YGGCCR 3 cut(s) 272, 1720, 2233
Eam1104I CTCTTC 2 cut(s) 1551, 2536
EarI CTCTTC 2 cut(s) 1551, 2536
EciI GGCGGA 2 cut(s) 20, 364
Ecl136II GAGCTC 1 cut(s) 1757
Eco130I CCWWGG 1 cut(s) 889
Eco147I AGGCCT 1 cut(s) 514
Eco24I GRGCYC 2 cut(s) 1461, 1759
Eco31I GGTCTC 1 cut(s) 726
Eco47I GGWCC 4 cut(s) 208, 1073, 2079, 2239
Eco47III AGCGCT 2 cut(s) 383, 412
Eco53kI GAGCTC 1 cut(s) 1757
Eco57I CTGAAG 5 cut(s) 684, 1822, 1929, 1947, 2184
Eco81I CCTNAGG 2 cut(s) 763, 1052
Eco88I CYCGRG 1 cut(s) 461
EcoICRI GAGCTC 1 cut(s) 1757
EcoNI CCTNNNNNAGG 2 cut(s) 1285, 2255
EcoO109I RGGNCCY 2 cut(s) 2079, 2239
EcoRI GAATTC 2 cut(s) 1242, 2365
EcoRII CCWGG 7 cut(s) 290, 299, 1185, 1367, 1396, 1516, 2235
EcoT14I CCWWGG 1 cut(s) 889
EcoT22I ATGCAT 1 cut(s) 1482
EcoT38I GRGCYC 2 cut(s) 1461, 1759
EgeI GGCGCC 1 cut(s) 523
EheI GGCGCC 1 cut(s) 523
ErhI CCWWGG 1 cut(s) 889
FaeI CATG 8 cut(s) 240, 521, 1014, 1069, 1287, 1454, 2177, 2300
FalI AAGNNNNNCTT 2 cut(s) 371, 403
FaqI GGGAC 2 cut(s) 935, 2225
FatI CATG 8 cut(s) 236, 517, 1010, 1065, 1283, 1450, 2173, 2296
FbaI TGATCA 2 cut(s) 331, 2170
Fnu4HI GCNGC 6 cut(s) 414, 495, 525, 1308, 1986, 2469
FokI GGATG 6 cut(s) 197, 424, 478, 1082, 1171, 1304
FriOI GRGCYC 2 cut(s) 1461, 1759
Fsp4HI GCNGC 6 cut(s) 414, 495, 525, 1308, 1986, 2469
FspBI CTAG 6 cut(s) 779, 890, 1508, 1641, 2063, 2559
GlaI GCGC 4 cut(s) 383, 412, 523, 2344
GluI GCNGC 6 cut(s) 414, 495, 525, 1308, 1986, 2469
GsaI CCCAGC 3 cut(s) 507, 2027, 2246
GsuI CTGGAG 1 cut(s) 1773
HaeII RGCGCY 3 cut(s) 385, 414, 525
HapII CCGG 4 cut(s) 206, 896, 1044, 1492
HgaI GACGC 1 cut(s) 1027
HhaI GCGC 4 cut(s) 384, 413, 524, 2345
Hin1I GRCGYC 1 cut(s) 522
Hin1II CATG 8 cut(s) 240, 521, 1014, 1069, 1287, 1454, 2177, 2300
Hin6I GCGC 4 cut(s) 382, 411, 522, 2343
HinP1I GCGC 4 cut(s) 382, 411, 522, 2343
HincII GTYRAC 4 cut(s) 817, 939, 1780, 2379
HindII GTYRAC 4 cut(s) 817, 939, 1780, 2379
HindIII AAGCTT 2 cut(s) 2151, 2436
HinfI GANTC 6 cut(s) 92, 151, 478, 1182, 1600, 1769
HpaI GTTAAC 1 cut(s) 2379
HpaII CCGG 4 cut(s) 206, 896, 1044, 1492
HphI GGTGA 6 cut(s) 109, 236, 341, 779, 1357, 1565
Hpy166II GTNNAC 7 cut(s) 211, 695, 817, 939, 1780, 1964, 2379
Hpy188I TCNGA 8 cut(s) 253, 1084, 1319, 1387, 1841, 1864, 1885, 1904
Hpy8I GTNNAC 7 cut(s) 211, 695, 817, 939, 1780, 1964, 2379
Hpy99I CGWCG 2 cut(s) 222, 2406
HpyAV CCTTC 9 cut(s) 201, 337, 708, 1029, 1544, 1846, 1922, 1999, 2441
HpyCH4III ACNGT 8 cut(s) 12, 83, 215, 329, 789, 814, 1666, 1777
HpyCH4IV ACGT 4 cut(s) 77, 489, 986, 2381
HpyF10VI GCNNNNNNNGC 6 cut(s) 196, 500, 850, 911, 2044, 2159
HpyF3I CTNAG 9 cut(s) 147, 407, 763, 837, 1052, 1093, 1856, 2252, 2291
HpySE526I ACGT 4 cut(s) 77, 489, 986, 2381
Hsp92I GRCGYC 1 cut(s) 522
Hsp92II CATG 8 cut(s) 240, 521, 1014, 1069, 1287, 1454, 2177, 2300
HspAI GCGC 4 cut(s) 382, 411, 522, 2343
KasI GGCGCC 1 cut(s) 521
Ksp22I TGATCA 2 cut(s) 331, 2170
KspAI GTTAAC 1 cut(s) 2379
Kzo9I GATC 8 cut(s) 70, 331, 640, 1141, 1432, 1688, 1841, 2170
LguI GCTCTTC 1 cut(s) 2536
LmnI GCTCC 4 cut(s) 547, 1633, 1754, 2332
Lsp1109I GCAGC 5 cut(s) 400, 481, 1294, 1972, 2480
LweI GCATC 4 cut(s) 303, 751, 1294, 2299
MabI ACCWGGT 1 cut(s) 1367
MaeI CTAG 6 cut(s) 779, 890, 1508, 1641, 2063, 2559
MaeII ACGT 4 cut(s) 77, 489, 986, 2381
MaeIII GTNAC 6 cut(s) 113, 617, 867, 982, 1660, 1874
MalI GATC 8 cut(s) 72, 333, 642, 1143, 1434, 1690, 1843, 2172
MbiI CCGCTC 1 cut(s) 2483
MboI GATC 8 cut(s) 70, 331, 640, 1141, 1432, 1688, 1841, 2170
MfeI CAATTG 1 cut(s) 2456
MflI RGATCY 3 cut(s) 1141, 1688, 1841
MhlI GDGCHC 3 cut(s) 651, 1461, 1759
MlsI TGGCCA 2 cut(s) 274, 2235
MluNI TGGCCA 2 cut(s) 274, 2235
Mly113I GGCGCC 1 cut(s) 522
MlyI GAGTC 2 cut(s) 487, 1191
MmeI TCCRAC 5 cut(s) 231, 465, 578, 995, 1100
Mox20I TGGCCA 2 cut(s) 274, 2235
Mph1103I ATGCAT 1 cut(s) 1482
MroXI GAANNNNTTC 3 cut(s) 1061, 1211, 1358
MscI TGGCCA 2 cut(s) 274, 2235
MslI CAYNNNNRTG 2 cut(s) 615, 1788
Msp20I TGGCCA 2 cut(s) 274, 2235
MspI CCGG 4 cut(s) 206, 896, 1044, 1492
MunI CAATTG 1 cut(s) 2456
MvaI CCWGG 7 cut(s) 292, 301, 1187, 1369, 1398, 1518, 2237
MwoI GCNNNNNNNGC 6 cut(s) 196, 500, 850, 911, 2044, 2159
NarI GGCGCC 1 cut(s) 522
NciI CCSGG 3 cut(s) 896, 1044, 1493
NdeII GATC 8 cut(s) 70, 331, 640, 1141, 1432, 1688, 1841, 2170
NheI GCTAGC 1 cut(s) 778
NlaIII CATG 8 cut(s) 240, 521, 1014, 1069, 1287, 1454, 2177, 2300
NlaIV GGNNCC 7 cut(s) 523, 843, 1090, 1459, 1690, 2081, 2241
NmuCI GTSAC 4 cut(s) 113, 617, 1660, 1874
NsiI ATGCAT 1 cut(s) 1482
NspV TTCGAA 1 cut(s) 1992
PceI AGGCCT 1 cut(s) 514
PciSI GCTCTTC 1 cut(s) 2536
PdmI GAANNNNTTC 3 cut(s) 1061, 1211, 1358
PfeI GAWTC 4 cut(s) 92, 151, 1600, 1769
PflFI GACNNNGTC 1 cut(s) 947
PflMI CCANNNNNTGG 1 cut(s) 827
PfoI TCCNGGA 1 cut(s) 1491
PkrI GCNGC 6 cut(s) 415, 496, 526, 1309, 1987, 2470
PleI GAGTC 2 cut(s) 486, 1190
PluTI GGCGCC 1 cut(s) 525
PpsI GAGTC 2 cut(s) 486, 1190
Ppu21I YACGTR 1 cut(s) 78
PpuMI RGGWCCY 2 cut(s) 2079, 2239
Psp124BI GAGCTC 1 cut(s) 1759
Psp1406I AACGTT 2 cut(s) 986, 2381
Psp5II RGGWCCY 2 cut(s) 2079, 2239
Psp6I CCWGG 7 cut(s) 290, 299, 1185, 1367, 1396, 1516, 2235
PspFI CCCAGC 3 cut(s) 503, 2023, 2242
PspGI CCWGG 7 cut(s) 290, 299, 1185, 1367, 1396, 1516, 2235
PspN4I GGNNCC 7 cut(s) 523, 843, 1090, 1459, 1690, 2081, 2241
PspOMI GGGCCC 1 cut(s) 1457
PspPPI RGGWCCY 2 cut(s) 2079, 2239
PstNI CAGNNNCTG 1 cut(s) 1670
PsuI RGATCY 3 cut(s) 1141, 1688, 1841
PsyI GACNNNGTC 1 cut(s) 947
RsaI GTAC 6 cut(s) 80, 696, 791, 1296, 2007, 2520
RsaNI GTAC 6 cut(s) 79, 695, 790, 1295, 2006, 2519
RseI CAYNNNNRTG 2 cut(s) 615, 1788
SacI GAGCTC 1 cut(s) 1759
SapI GCTCTTC 1 cut(s) 2536
SatI GCNGC 6 cut(s) 414, 495, 525, 1308, 1986, 2469
Sau3AI GATC 8 cut(s) 70, 331, 640, 1141, 1432, 1688, 1841, 2170
SchI GAGTC 2 cut(s) 487, 1191
SduI GDGCHC 3 cut(s) 651, 1461, 1759
SexAI ACCWGGT 1 cut(s) 1367
SfaNI GCATC 4 cut(s) 303, 751, 1294, 2299
SfcI CTRYAG 1 cut(s) 676
SfoI GGCGCC 1 cut(s) 523
SfuI TTCGAA 1 cut(s) 1992
SinI GGWCC 4 cut(s) 208, 1073, 2079, 2239
SmiMI CAYNNNNRTG 2 cut(s) 615, 1788
SmlI CTYRAG 3 cut(s) 179, 1656, 2086
SmoI CTYRAG 3 cut(s) 179, 1656, 2086
SseBI AGGCCT 1 cut(s) 514
SsiI CCGC 7 cut(s) 5, 24, 31, 375, 525, 1310, 2483
SspDI GGCGCC 1 cut(s) 521
SspI AATATT 1 cut(s) 2119
SspMI CTAG 6 cut(s) 779, 890, 1508, 1641, 2063, 2559
SstI GAGCTC 1 cut(s) 1759
StuI AGGCCT 1 cut(s) 514
StyI CCWWGG 1 cut(s) 889
TaaI ACNGT 8 cut(s) 12, 83, 215, 329, 789, 814, 1666, 1777
TaiI ACGT 4 cut(s) 80, 492, 989, 2384
TatI WGTACW 2 cut(s) 789, 1294
TauI GCSGC 1 cut(s) 527
TfiI GAWTC 4 cut(s) 92, 151, 1600, 1769
TscAI CASTG 7 cut(s) 33, 88, 218, 341, 544, 792, 817
TseFI GTSAC 4 cut(s) 113, 617, 1660, 1874
TseI GCWGC 5 cut(s) 413, 494, 1307, 1985, 2468
Tsp45I GTSAC 4 cut(s) 113, 617, 1660, 1874
TspGWI ACGGA 2 cut(s) 534, 2173
TspRI CASTG 7 cut(s) 33, 88, 218, 341, 544, 792, 817
Tth111I GACNNNGTC 1 cut(s) 947
Van91I CCANNNNNTGG 1 cut(s) 827
VpaK11BI GGWCC 4 cut(s) 208, 1073, 2079, 2239
XagI CCTNNNNNAGG 2 cut(s) 1285, 2255
XapI RAATTY 6 cut(s) 231, 1193, 1242, 1330, 2365, 2490
XbaI TCTAGA 1 cut(s) 1507
XcmI CCANNNNNNNNNTGG 1 cut(s) 267
XmaJI CCTAGG 1 cut(s) 889
XmnI GAANNNNTTC 3 cut(s) 1061, 1211, 1358
XspI CTAG 6 cut(s) 779, 890, 1508, 1641, 2063, 2559
Zsp2I ATGCAT 1 cut(s) 1482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.