RchiOBHm_Chr2g0142701

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000063
Physical Location & Seq
Forward (+)
60323456 .. 60327228
3773 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ51283

Sequence Viewer

Length: 1902 bp
ATGGCTTCAAAAGGGACCAGAGAAGATAATTATGAAGGCAAACAAAAAAGTATCACCAAACGCTCATTTGCATTGGCGGAAGCACTAAGTCAAGCCACTGAAAAGAATGCCTCGGCCTTCATGAATAGAATAACACAACGAGTCCCGAATGAAGGTGGGGTACGTCAACTTGGCCCAAGTTTCCAGAGTGATATACCGGCTGATGTGGAAAAAATTTTGAGCCAACATGAAGTGGATGATTCTAGCTATTTCAGTGAAGGAAAAGCATGGGGAGCATGGGGAACAAAACCAGGAAAATGGCCTGGTGAAACGGCCAACTGGATTCCGTGGGTAGAACGAGTCGAGAAGCGATTTGGGGAAATATGGAAACGACTTGGGATCTATGACGCCATCAAGCTGTCCACCATTACTATTCCTTGTGACCGCTCCTTGCTGGCTGCCGCTATGTGTTTTTGGAGTTCTCAAACAAACTCTCTGGAGCTTCAGTTTGGTGCACTTAGTCCGACCTTGATTGATATAGCGGCCATTATAGGCCTGCCGCCACATGGGCAAGTGGTGGACATTGTATTTGCAGAAGGAAAGTTTGACATTGATCTTAGTGGTGAGCTAAGAGATCGAAGTAAGGGCAGACCAGCCGTTGCCAATTATAATACATGGATTGAGGTGTTTAACAGCGGCTTGGGAAATAAGTCACTTGATAGTATTGGCAGTCCAGAAGAGAGAGAGGAAAACCAGCAGGAGACAATGGAAGTAACTCATGTAGAGCATGCTGCGTTTCTTGCCTTTTGGATATGTAAGTACTTAGTGTGCACAACTTCTAAAAAAGTAAATGTGGAGTACTACAAGTTGGCTGAAGCATTAGCAAGTAAGGAAGTACAAGAGAGCGATCAGCCATTGGCTCTTGGTCCATTTGTGCTCGCCCACTTATACAGATGTCTTCACCATTGTGTGACCGAAGGACTAAACCCAAATTGGTCTGGGCCATTGTGGATTTTTCAGTTGTGGCTGCACACTTACTTTCCCACTTTCAGACAGCCGGGTTTAGCATTGGCCATAGACACCACTCTTGGACAACAATTGGCTCCTCTTGATTTACTTACTCATTCGGCAGAAGAGTGTTTTGAGGTGTTGTTCAAGTGTCCAGAGTTTTCTGCAGAACAGTTTGCCGTTTGTTTTAGTAGGAAGTATCCATCCTACCTTGCAATGGATATCAGCCAACACGCCTCAGAAAGTGAGACGAGATGGGAGACTGCGTGTTCAGCTTGGAAGAGTGCAATAGGTATGAGGGATCTCTTCTGGGGTACCTTGTCTGGTAAAACACTCAAGTGTGGAGTGGAGTTATATTCACCATCCTACTTCAGTCGTCAGTTGGGATATTATCAAGCTATACCGGCTCCGGTGCCAGAATCGTCAAACCGATATAGTTCATTGCGAGCCGTTTTCTCCAACAAGGACGACATTGAGCAGAATAACAAGGCGTTTGTGTACAACATGAGCTTTCCCATGAAGACAAGAGTAGCAACTAGCAAGAGTTCCTCCCAGTTCAGAGAGTGGTGGGCAAAACGAGTAGGTAGCCGCTTTAAAGATGGGTTGGTGTCGGCTAGGCGATCAGCTTTTGCAGGAAATCCATGGGCACAAGAGAAGCCGAAAGCTGTAAGGCGTGGTAAAATAACAAGCAAGGTTGCTAGAGCAATCCCAACTATAAGTGGCCAAGAATCTTTGAAGAAGTGTGCTAAAGCACAAAGAGAAAGGCCAACCATAGTGCGGCCACTGAGGCGGCCAAAGATGGTGCCACTTTGTCTTCAACGTCTCAATCTCCTCCAGCGAAACGACCGGCAACACAAGATGAGCAATCTTCTGAGAGCGAAGAACGATTGTGCTTGGCCAAACGAAGTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

633

Amino Acids

71.36

Weight (kDa)

8.98

Isoelectric Point (pI)

45.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 126 - 519 1.3e-36 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
Acc65I GGTACC 1 cut(s) 1301
AccB1I GGYRCC 3 cut(s) 1301, 1399, 1789
AccBSI CCGCTC 1 cut(s) 426
AciI CCGC 9 cut(s) 77, 424, 441, 521, 539, 675, 1576, 1765, 1777
AclWI GGATC 2 cut(s) 386, 1296
AcoI YGGCCR 7 cut(s) 312, 522, 1050, 1708, 1766, 1778, 1883
AcsI RAATTY 1 cut(s) 213
AcuI CTGAAG 3 cut(s) 467, 873, 1342
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 6 cut(s) 162, 800, 839, 876, 1303, 1487
AfiI CCNNNNNNNGG 4 cut(s) 152, 545, 1204, 1764
AgsI TTSAA 4 cut(s) 9, 1135, 1723, 1805
AjnI CCWGG 2 cut(s) 289, 301
AleI CACNNNNGTG 2 cut(s) 945, 1324
AluBI AGCT 9 cut(s) 246, 397, 481, 607, 1262, 1385, 1497, 1613, 1652
AluI AGCT 9 cut(s) 246, 397, 481, 607, 1262, 1385, 1497, 1613, 1652
Alw21I GWGCWC 3 cut(s) 496, 812, 918
Alw26I GTCTC 4 cut(s) 734, 1229, 1241, 1814
Alw44I GTGCAC 2 cut(s) 492, 808
AlwI GGATC 2 cut(s) 386, 1296
ApaLI GTGCAC 2 cut(s) 492, 808
ApeKI GCWGC 3 cut(s) 437, 770, 1006
ApoI RAATTY 1 cut(s) 213
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
Asp718I GGTACC 1 cut(s) 1301
AspS9I GGNCC 4 cut(s) 15, 173, 905, 980
AsuC2I CCSGG 1 cut(s) 1038
AsuHPI GGTGA 5 cut(s) 46, 317, 614, 932, 1338
AvaII GGWCC 2 cut(s) 15, 905
BaeGI GKGCMC 3 cut(s) 496, 812, 1636
BalI TGGCCA 3 cut(s) 1052, 1710, 1885
BanI GGYRCC 3 cut(s) 1301, 1399, 1789
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
BbsI GAAGAC 3 cut(s) 929, 1514, 1793
Bbv12I GWGCWC 3 cut(s) 496, 812, 918
BbvI GCAGC 3 cut(s) 424, 757, 993
BccI CCATC 6 cut(s) 398, 1198, 1236, 1357, 1580, 1780
BceAI ACGGC 4 cut(s) 327, 620, 1151, 1421
BciT130I CCWGG 2 cut(s) 291, 303
BciVI GTATCC 1 cut(s) 1197
BcnI CCSGG 1 cut(s) 1038
BcoDI GTCTC 4 cut(s) 734, 1229, 1241, 1814
BfaI CTAG 5 cut(s) 243, 1524, 1602, 1686, 1900
BfmI CTRYAG 1 cut(s) 1152
BfuI GTATCC 1 cut(s) 1197
BglI GCCNNNNNGGC 2 cut(s) 547, 1774
BmcAI AGTACT 2 cut(s) 800, 839
Bme1390I CCNGG 3 cut(s) 291, 303, 1038
Bme18I GGWCC 2 cut(s) 15, 905
BmgT120I GGNCC 4 cut(s) 15, 173, 905, 980
BmiI GGNNCC 6 cut(s) 16, 1083, 1303, 1395, 1401, 1791
BmrFI CCNGG 3 cut(s) 291, 303, 1038
BmrI ACTGGG 1 cut(s) 1534
BmuI ACTGGG 1 cut(s) 1534
BpiI GAAGAC 3 cut(s) 929, 1514, 1793
BpmI CTGGAG 2 cut(s) 497, 1805
BpuEI CTTGAG 1 cut(s) 1307
BpuMI CCSGG 1 cut(s) 1038
BsaHI GRCGYC 1 cut(s) 387
BsaJI CCNNGG 3 cut(s) 111, 326, 1628
BsaWI WCCGGW 1 cut(s) 1396
BsaXI ACNNNNNCTCC 4 cut(s) 470, 500, 1238, 1268
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 545, 1204, 1764
Bse118I RCCGGY 3 cut(s) 196, 1390, 1833
Bse1I ACTGG 2 cut(s) 323, 1540
Bse3DI GCAATG 2 cut(s) 1209, 1427
BseBI CCWGG 2 cut(s) 291, 303
BseDI CCNNGG 3 cut(s) 111, 326, 1628
BseGI GGATG 3 cut(s) 241, 1190, 1349
BseLI CCNNNNNNNGG 4 cut(s) 152, 545, 1204, 1764
BseMI GCAATG 2 cut(s) 1209, 1427
BseMII CTCAG 3 cut(s) 1239, 1763, 1850
BseNI ACTGG 2 cut(s) 323, 1540
BseRI GAGGAG 2 cut(s) 1074, 1808
BseSI GKGCMC 3 cut(s) 496, 812, 1636
BseXI GCAGC 3 cut(s) 424, 757, 993
BsgI GTGCAG 1 cut(s) 992
Bsh1285I CGRYCG 1 cut(s) 1834
BshNI GGYRCC 3 cut(s) 1301, 1399, 1789
BsiEI CGRYCG 1 cut(s) 1834
BsiHKAI GWGCWC 3 cut(s) 496, 812, 918
BsiSI CCGG 5 cut(s) 197, 1037, 1391, 1397, 1834
BslFI GGGAC 2 cut(s) 28, 128
BslI CCNNNNNNNGG 4 cut(s) 152, 545, 1204, 1764
BsmAI GTCTC 4 cut(s) 734, 1229, 1241, 1814
BsmBI CGTCTC 2 cut(s) 1229, 1814
BsmFI GGGAC 2 cut(s) 28, 128
BsmI GAATGC 1 cut(s) 112
Bsp1286I GDGCHC 4 cut(s) 496, 812, 918, 1636
Bsp1407I TGTACA 1 cut(s) 1485
Bsp143I GATC 6 cut(s) 378, 592, 613, 886, 1288, 1607
Bsp19I CCATGG 1 cut(s) 1628
BspACI CCGC 9 cut(s) 77, 424, 441, 521, 539, 675, 1576, 1765, 1777
BspCNI CTCAG 3 cut(s) 1238, 1764, 1851
BspHI TCATGA 1 cut(s) 120
BspLI GGNNCC 6 cut(s) 16, 1083, 1303, 1395, 1401, 1791
BspMAI CTGCAG 1 cut(s) 1156
BspPI GGATC 2 cut(s) 386, 1296
BspT107I GGYRCC 3 cut(s) 1301, 1399, 1789
BsrBI CCGCTC 1 cut(s) 426
BsrDI GCAATG 2 cut(s) 1209, 1427
BsrFI RCCGGY 3 cut(s) 196, 1390, 1833
BsrGI TGTACA 1 cut(s) 1485
BsrI ACTGG 2 cut(s) 323, 1540
BssAI RCCGGY 3 cut(s) 196, 1390, 1833
BssECI CCNNGG 3 cut(s) 111, 326, 1628
BssMI GATC 6 cut(s) 378, 592, 613, 886, 1288, 1607
BssNI GRCGYC 1 cut(s) 387
BssT1I CCWWGG 1 cut(s) 1628
Bst2UI CCWGG 2 cut(s) 291, 303
Bst4CI ACNGT 1 cut(s) 1161
Bst6I CTCTTC 4 cut(s) 711, 1107, 1262, 1298
BstACI GRCGYC 1 cut(s) 387
BstAUI TGTACA 1 cut(s) 1485
BstC8I GCNNGC 5 cut(s) 435, 536, 768, 918, 1434
BstDEI CTNAG 8 cut(s) 86, 497, 596, 608, 802, 1225, 1772, 1859
BstDSI CCRYGG 2 cut(s) 326, 1628
BstF5I GGATG 3 cut(s) 241, 1190, 1349
BstKTI GATC 6 cut(s) 381, 595, 616, 889, 1291, 1610
BstMAI GTCTC 4 cut(s) 734, 1229, 1241, 1814
BstMBI GATC 6 cut(s) 378, 592, 613, 886, 1288, 1607
BstMCI CGRYCG 1 cut(s) 1834
BstMWI GCNNNNNNNGC 6 cut(s) 272, 547, 779, 1259, 1391, 1774
BstNI CCWGG 2 cut(s) 291, 303
BstNSI RCATGY 1 cut(s) 770
BstSCI CCNGG 3 cut(s) 289, 301, 1036
BstSFI CTRYAG 1 cut(s) 1152
BstSLI GKGCMC 3 cut(s) 496, 812, 1636
BstV1I GCAGC 3 cut(s) 424, 757, 993
BstV2I GAAGAC 3 cut(s) 929, 1514, 1793
BstX2I RGATCY 2 cut(s) 378, 1288
BstXI CCANNNNNNTGG 1 cut(s) 297
BstYI RGATCY 2 cut(s) 378, 1288
BsuI GTATCC 1 cut(s) 1197
BtgI CCRYGG 2 cut(s) 326, 1628
BtsCI GGATG 3 cut(s) 241, 1190, 1349
BtsIMutI CAGTG 3 cut(s) 96, 259, 1769
Cac8I GCNNGC 5 cut(s) 435, 536, 768, 918, 1434
CciI TCATGA 1 cut(s) 120
Cfr10I RCCGGY 3 cut(s) 196, 1390, 1833
Cfr13I GGNCC 4 cut(s) 15, 173, 905, 980
CseI GACGC 1 cut(s) 395
Csp6I GTAC 6 cut(s) 161, 799, 838, 875, 1302, 1486
CviQI GTAC 6 cut(s) 161, 799, 838, 875, 1302, 1486
DdeI CTNAG 8 cut(s) 86, 497, 596, 608, 802, 1225, 1772, 1859
DpnI GATC 6 cut(s) 380, 594, 615, 888, 1290, 1609
DpnII GATC 6 cut(s) 378, 592, 613, 886, 1288, 1607
DraI TTTAAA 1 cut(s) 1582
EaeI YGGCCR 7 cut(s) 312, 522, 1050, 1708, 1766, 1778, 1883
Eam1104I CTCTTC 4 cut(s) 711, 1107, 1262, 1298
EarI CTCTTC 4 cut(s) 711, 1107, 1262, 1298
EciI GGCGGA 1 cut(s) 92
Eco130I CCWWGG 1 cut(s) 1628
Eco147I AGGCCT 1 cut(s) 534
Eco32I GATATC 1 cut(s) 1210
Eco47I GGWCC 2 cut(s) 15, 905
Eco57I CTGAAG 3 cut(s) 467, 873, 1342
EcoRII CCWGG 2 cut(s) 289, 301
EcoRV GATATC 1 cut(s) 1210
EcoT14I CCWWGG 1 cut(s) 1628
ErhI CCWWGG 1 cut(s) 1628
Esp3I CGTCTC 2 cut(s) 1229, 1814
FaqI GGGAC 2 cut(s) 28, 128
FokI GGATG 3 cut(s) 248, 1177, 1336
FspBI CTAG 5 cut(s) 243, 1524, 1602, 1686, 1900
GsuI CTGGAG 2 cut(s) 497, 1805
HapII CCGG 5 cut(s) 197, 1037, 1391, 1397, 1834
HgaI GACGC 1 cut(s) 395
Hin1I GRCGYC 1 cut(s) 387
HincII GTYRAC 1 cut(s) 167
HindII GTYRAC 1 cut(s) 167
HinfI GANTC 6 cut(s) 141, 239, 322, 339, 1406, 1715
HpaII CCGG 5 cut(s) 197, 1037, 1391, 1397, 1834
HphI GGTGA 5 cut(s) 46, 317, 614, 932, 1338
Hpy166II GTNNAC 6 cut(s) 167, 402, 494, 559, 810, 1486
Hpy188I TCNGA 5 cut(s) 504, 1031, 1228, 1547, 1860
Hpy188III TCNNGA 8 cut(s) 121, 145, 184, 343, 476, 713, 1088, 1142
Hpy8I GTNNAC 6 cut(s) 167, 402, 494, 559, 810, 1486
HpyAV CCTTC 6 cut(s) 29, 127, 146, 251, 569, 950
HpyCH4III ACNGT 1 cut(s) 1161
HpyCH4IV ACGT 2 cut(s) 163, 1807
HpyCH4V TGCA 9 cut(s) 71, 494, 572, 810, 1009, 1154, 1202, 1274, 1619
HpyF10VI GCNNNNNNNGC 6 cut(s) 272, 547, 779, 1259, 1391, 1774
HpyF3I CTNAG 8 cut(s) 86, 497, 596, 608, 802, 1225, 1772, 1859
HpySE526I ACGT 2 cut(s) 163, 1807
Hsp92I GRCGYC 1 cut(s) 387
KpnI GGTACC 1 cut(s) 1305
Kzo9I GATC 6 cut(s) 378, 592, 613, 886, 1288, 1607
LmnI GCTCC 5 cut(s) 272, 431, 478, 1087, 1399
Lsp1109I GCAGC 3 cut(s) 424, 757, 993
MaeI CTAG 5 cut(s) 243, 1524, 1602, 1686, 1900
MaeII ACGT 2 cut(s) 163, 1807
MaeIII GTNAC 4 cut(s) 419, 690, 751, 949
MalI GATC 6 cut(s) 380, 594, 615, 888, 1290, 1609
MbiI CCGCTC 1 cut(s) 426
MboI GATC 6 cut(s) 378, 592, 613, 886, 1288, 1607
MfeI CAATTG 1 cut(s) 1076
MflI RGATCY 2 cut(s) 378, 1288
MhlI GDGCHC 4 cut(s) 496, 812, 918, 1636
MlsI TGGCCA 3 cut(s) 1052, 1710, 1885
MluCI AATT 5 cut(s) 28, 213, 643, 970, 1076
MluNI TGGCCA 3 cut(s) 1052, 1710, 1885
MlyI GAGTC 2 cut(s) 150, 348
MmeI TCCRAC 2 cut(s) 527, 1470
Mox20I TGGCCA 3 cut(s) 1052, 1710, 1885
MscI TGGCCA 3 cut(s) 1052, 1710, 1885
MseI TTAA 2 cut(s) 669, 1581
MslI CAYNNNNRTG 2 cut(s) 945, 1324
Msp20I TGGCCA 3 cut(s) 1052, 1710, 1885
MspA1I CMGCKG 1 cut(s) 675
MspI CCGG 5 cut(s) 197, 1037, 1391, 1397, 1834
MspR9I CCNGG 3 cut(s) 291, 303, 1038
MunI CAATTG 1 cut(s) 1076
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 2 cut(s) 291, 303
MwoI GCNNNNNNNGC 6 cut(s) 272, 547, 779, 1259, 1391, 1774
NciI CCSGG 1 cut(s) 1038
NcoI CCATGG 1 cut(s) 1628
NdeII GATC 6 cut(s) 378, 592, 613, 886, 1288, 1607
NlaIV GGNNCC 6 cut(s) 16, 1083, 1303, 1395, 1401, 1791
NmeAIII GCCGAG 1 cut(s) 92
NmuCI GTSAC 3 cut(s) 419, 690, 949
NspI RCATGY 1 cut(s) 770
OliI CACNNNNGTG 2 cut(s) 945, 1324
PaeI GCATGC 1 cut(s) 770
PagI TCATGA 1 cut(s) 120
PceI AGGCCT 1 cut(s) 534
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 4 cut(s) 239, 322, 1406, 1715
PleI GAGTC 2 cut(s) 149, 347
PpsI GAGTC 2 cut(s) 149, 347
PsiI TTATAA 1 cut(s) 648
Psp6I CCWGG 2 cut(s) 289, 301
PspGI CCWGG 2 cut(s) 289, 301
PspN4I GGNNCC 6 cut(s) 16, 1083, 1303, 1395, 1401, 1791
PspPI GGNCC 4 cut(s) 15, 173, 905, 980
PstI CTGCAG 1 cut(s) 1156
PsuI RGATCY 2 cut(s) 378, 1288
RsaI GTAC 6 cut(s) 162, 800, 839, 876, 1303, 1487
RsaNI GTAC 6 cut(s) 161, 799, 838, 875, 1302, 1486
RseI CAYNNNNRTG 2 cut(s) 945, 1324
SaqAI TTAA 2 cut(s) 669, 1581
Sau3AI GATC 6 cut(s) 378, 592, 613, 886, 1288, 1607
Sau96I GGNCC 4 cut(s) 15, 173, 905, 980
ScaI AGTACT 2 cut(s) 800, 839
SchI GAGTC 2 cut(s) 150, 348
ScrFI CCNGG 3 cut(s) 291, 303, 1038
SduI GDGCHC 4 cut(s) 496, 812, 918, 1636
SfcI CTRYAG 1 cut(s) 1152
SinI GGWCC 2 cut(s) 15, 905
SmiMI CAYNNNNRTG 2 cut(s) 945, 1324
SmlI CTYRAG 1 cut(s) 1322
SmoI CTYRAG 1 cut(s) 1322
SphI GCATGC 1 cut(s) 770
Sse9I AATT 5 cut(s) 28, 213, 643, 970, 1076
SseBI AGGCCT 1 cut(s) 534
SsiI CCGC 9 cut(s) 77, 424, 441, 521, 539, 675, 1576, 1765, 1777
SspMI CTAG 5 cut(s) 243, 1524, 1602, 1686, 1900
StuI AGGCCT 1 cut(s) 534
StyD4I CCNGG 3 cut(s) 289, 301, 1036
StyI CCWWGG 1 cut(s) 1628
TaaI ACNGT 1 cut(s) 1161
TaiI ACGT 2 cut(s) 166, 1810
TaqI TCGA 2 cut(s) 342, 616
TaqII GACCGA 1 cut(s) 968
TasI AATT 5 cut(s) 28, 213, 643, 970, 1076
TatI WGTACW 4 cut(s) 798, 837, 874, 1485
TauI GCSGC 7 cut(s) 443, 524, 541, 678, 1578, 1768, 1780
TfiI GAWTC 4 cut(s) 239, 322, 1406, 1715
Tru1I TTAA 2 cut(s) 669, 1581
Tru9I TTAA 2 cut(s) 669, 1581
TscAI CASTG 3 cut(s) 103, 259, 1776
TseFI GTSAC 3 cut(s) 419, 690, 949
TseI GCWGC 3 cut(s) 437, 770, 1006
Tsp45I GTSAC 3 cut(s) 419, 690, 949
TspDTI ATGAA 7 cut(s) 48, 109, 137, 165, 243, 1416, 1520
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 3 cut(s) 103, 259, 1776
VneI GTGCAC 2 cut(s) 492, 808
VpaK11BI GGWCC 2 cut(s) 15, 905
XapI RAATTY 1 cut(s) 213
XceI RCATGY 1 cut(s) 770
XspI CTAG 5 cut(s) 243, 1524, 1602, 1686, 1900
ZrmI AGTACT 2 cut(s) 800, 839
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.