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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 1 cut(s) | 12 |
| AcuI | CTGAAG | 1 cut(s) | 393 |
| AfaI | GTAC | 2 cut(s) | 231, 276 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 208, 307, 374 |
| AgsI | TTSAA | 1 cut(s) | 297 |
| AjnI | CCWGG | 2 cut(s) | 270, 300 |
| AluBI | AGCT | 3 cut(s) | 47, 163, 291 |
| AluI | AGCT | 3 cut(s) | 47, 163, 291 |
| Alw21I | GWGCWC | 1 cut(s) | 49 |
| Alw26I | GTCTC | 1 cut(s) | 366 |
| AoxI | GGCC | 1 cut(s) | 12 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 292 |
| AspLEI | GCGC | 1 cut(s) | 410 |
| AsuHPI | GGTGA | 1 cut(s) | 164 |
| BanII | GRGCYC | 1 cut(s) | 49 |
| BbsI | GAAGAC | 1 cut(s) | 225 |
| Bbv12I | GWGCWC | 1 cut(s) | 49 |
| BccI | CCATC | 1 cut(s) | 4 |
| BciT130I | CCWGG | 2 cut(s) | 272, 302 |
| BciVI | GTATCC | 1 cut(s) | 372 |
| BclI | TGATCA | 1 cut(s) | 391 |
| BcoDI | GTCTC | 1 cut(s) | 366 |
| BfuI | GTATCC | 1 cut(s) | 372 |
| Bme1390I | CCNGG | 2 cut(s) | 272, 302 |
| BmiI | GGNNCC | 1 cut(s) | 76 |
| BmrFI | CCNGG | 2 cut(s) | 272, 302 |
| BmrI | ACTGGG | 1 cut(s) | 188 |
| BmuI | ACTGGG | 1 cut(s) | 188 |
| BpiI | GAAGAC | 1 cut(s) | 225 |
| BpmI | CTGGAG | 1 cut(s) | 323 |
| Bpu10I | CCTNAGC | 1 cut(s) | 207 |
| BsaJI | CCNNGG | 2 cut(s) | 50, 300 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 349, 379 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 208, 307, 374 |
| Bse1I | ACTGG | 1 cut(s) | 194 |
| Bse3DI | GCAATG | 1 cut(s) | 245 |
| BseBI | CCWGG | 2 cut(s) | 272, 302 |
| BseDI | CCNNGG | 2 cut(s) | 50, 300 |
| BseGI | GGATG | 1 cut(s) | 217 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 208, 307, 374 |
| BseMI | GCAATG | 1 cut(s) | 245 |
| BseMII | CTCAG | 1 cut(s) | 32 |
| BseNI | ACTGG | 1 cut(s) | 194 |
| BseRI | GAGGAG | 2 cut(s) | 26, 354 |
| BseYI | CCCAGC | 1 cut(s) | 237 |
| BshFI | GGCC | 1 cut(s) | 14 |
| BsiHKAI | GWGCWC | 1 cut(s) | 49 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 208, 307, 374 |
| BsmAI | GTCTC | 1 cut(s) | 366 |
| BsmBI | CGTCTC | 1 cut(s) | 366 |
| BsmI | GAATGC | 1 cut(s) | 357 |
| BsnI | GGCC | 1 cut(s) | 14 |
| Bsp1286I | GDGCHC | 1 cut(s) | 49 |
| Bsp143I | GATC | 1 cut(s) | 391 |
| Bsp19I | CCATGG | 1 cut(s) | 50 |
| BspANI | GGCC | 1 cut(s) | 14 |
| BspCNI | CTCAG | 1 cut(s) | 33 |
| BspLI | GGNNCC | 1 cut(s) | 76 |
| BspQI | GCTCTTC | 1 cut(s) | 318 |
| BsrDI | GCAATG | 1 cut(s) | 245 |
| BsrI | ACTGG | 1 cut(s) | 194 |
| BssECI | CCNNGG | 2 cut(s) | 50, 300 |
| BssMI | GATC | 1 cut(s) | 391 |
| BssT1I | CCWWGG | 1 cut(s) | 50 |
| Bst2UI | CCWGG | 2 cut(s) | 272, 302 |
| Bst6I | CTCTTC | 1 cut(s) | 318 |
| BstDEI | CTNAG | 2 cut(s) | 41, 207 |
| BstDSI | CCRYGG | 1 cut(s) | 50 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 372 |
| BstF5I | GGATG | 1 cut(s) | 217 |
| BstHHI | GCGC | 1 cut(s) | 410 |
| BstKTI | GATC | 1 cut(s) | 394 |
| BstMAI | GTCTC | 1 cut(s) | 366 |
| BstMBI | GATC | 1 cut(s) | 391 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 234 |
| BstNI | CCWGG | 2 cut(s) | 272, 302 |
| BstSCI | CCNGG | 2 cut(s) | 270, 300 |
| BstV2I | GAAGAC | 1 cut(s) | 225 |
| BsuI | GTATCC | 1 cut(s) | 372 |
| BsuRI | GGCC | 1 cut(s) | 14 |
| BtgI | CCRYGG | 1 cut(s) | 50 |
| BtsCI | GGATG | 1 cut(s) | 217 |
| CfoI | GCGC | 1 cut(s) | 410 |
| Csp6I | GTAC | 2 cut(s) | 230, 275 |
| CviAII | CATG | 3 cut(s) | 51, 66, 395 |
| CviJI | RGCY | 7 cut(s) | 14, 47, 77, 163, 237, 291, 311 |
| CviKI_1 | RGCY | 7 cut(s) | 14, 47, 77, 163, 237, 291, 311 |
| CviQI | GTAC | 2 cut(s) | 230, 275 |
| DdeI | CTNAG | 2 cut(s) | 41, 207 |
| DpnI | GATC | 1 cut(s) | 393 |
| DpnII | GATC | 1 cut(s) | 391 |
| EaeI | YGGCCR | 1 cut(s) | 12 |
| Eam1104I | CTCTTC | 1 cut(s) | 318 |
| EarI | CTCTTC | 1 cut(s) | 318 |
| Ecl136II | GAGCTC | 1 cut(s) | 47 |
| Eco130I | CCWWGG | 1 cut(s) | 50 |
| Eco24I | GRGCYC | 1 cut(s) | 49 |
| Eco53kI | GAGCTC | 1 cut(s) | 47 |
| Eco57I | CTGAAG | 1 cut(s) | 393 |
| EcoICRI | GAGCTC | 1 cut(s) | 47 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 372 |
| EcoRII | CCWGG | 2 cut(s) | 270, 300 |
| EcoT14I | CCWWGG | 1 cut(s) | 50 |
| EcoT38I | GRGCYC | 1 cut(s) | 49 |
| ErhI | CCWWGG | 1 cut(s) | 50 |
| Esp3I | CGTCTC | 1 cut(s) | 366 |
| FaeI | CATG | 3 cut(s) | 54, 69, 398 |
| FaiI | YATR | 6 cut(s) | 52, 67, 84, 344, 396, 415 |
| FatI | CATG | 3 cut(s) | 50, 65, 394 |
| FbaI | TGATCA | 1 cut(s) | 391 |
| FokI | GGATG | 1 cut(s) | 224 |
| FriOI | GRGCYC | 1 cut(s) | 49 |
| GlaI | GCGC | 1 cut(s) | 409 |
| GsaI | CCCAGC | 1 cut(s) | 241 |
| GsuI | CTGGAG | 1 cut(s) | 323 |
| HaeIII | GGCC | 1 cut(s) | 14 |
| HhaI | GCGC | 1 cut(s) | 410 |
| Hin1II | CATG | 3 cut(s) | 54, 69, 398 |
| Hin6I | GCGC | 1 cut(s) | 408 |
| HinP1I | GCGC | 1 cut(s) | 408 |
| HincII | GTYRAC | 1 cut(s) | 199 |
| HindII | GTYRAC | 1 cut(s) | 199 |
| HinfI | GANTC | 3 cut(s) | 128, 281, 329 |
| HphI | GGTGA | 1 cut(s) | 164 |
| Hpy166II | GTNNAC | 2 cut(s) | 190, 199 |
| Hpy188I | TCNGA | 1 cut(s) | 350 |
| Hpy188III | TCNNGA | 3 cut(s) | 40, 57, 285 |
| Hpy8I | GTNNAC | 2 cut(s) | 190, 199 |
| HpyAV | CCTTC | 3 cut(s) | 100, 348, 368 |
| HpyCH4IV | ACGT | 1 cut(s) | 359 |
| HpyCH4V | TGCA | 1 cut(s) | 142 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 234 |
| HpyF3I | CTNAG | 2 cut(s) | 41, 207 |
| HpySE526I | ACGT | 1 cut(s) | 359 |
| Hsp92II | CATG | 3 cut(s) | 54, 69, 398 |
| HspAI | GCGC | 1 cut(s) | 408 |
| Ksp22I | TGATCA | 1 cut(s) | 391 |
| Kzo9I | GATC | 1 cut(s) | 391 |
| LguI | GCTCTTC | 1 cut(s) | 318 |
| LmnI | GCTCC | 2 cut(s) | 52, 74 |
| MaeII | ACGT | 1 cut(s) | 359 |
| MalI | GATC | 1 cut(s) | 393 |
| MboI | GATC | 1 cut(s) | 391 |
| MboII | GAAGA | 3 cut(s) | 123, 230, 305 |
| MhlI | GDGCHC | 1 cut(s) | 49 |
| MnlI | CCTC | 6 cut(s) | 44, 47, 88, 235, 375, 393 |
| MroXI | GAANNNNTTC | 1 cut(s) | 292 |
| MseI | TTAA | 1 cut(s) | 252 |
| MspR9I | CCNGG | 2 cut(s) | 272, 302 |
| Mva1269I | GAATGC | 1 cut(s) | 357 |
| MvaI | CCWGG | 2 cut(s) | 272, 302 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 234 |
| NcoI | CCATGG | 1 cut(s) | 50 |
| NdeII | GATC | 1 cut(s) | 391 |
| NlaIII | CATG | 3 cut(s) | 54, 69, 398 |
| NlaIV | GGNNCC | 1 cut(s) | 76 |
| PciSI | GCTCTTC | 1 cut(s) | 318 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 283 |
| PctI | GAATGC | 1 cut(s) | 357 |
| PdmI | GAANNNNTTC | 1 cut(s) | 292 |
| PfeI | GAWTC | 3 cut(s) | 128, 281, 329 |
| Psp124BI | GAGCTC | 1 cut(s) | 49 |
| Psp6I | CCWGG | 2 cut(s) | 270, 300 |
| PspFI | CCCAGC | 1 cut(s) | 237 |
| PspGI | CCWGG | 2 cut(s) | 270, 300 |
| PspN4I | GGNNCC | 1 cut(s) | 76 |
| RsaI | GTAC | 2 cut(s) | 231, 276 |
| RsaNI | GTAC | 2 cut(s) | 230, 275 |
| SacI | GAGCTC | 1 cut(s) | 49 |
| SapI | GCTCTTC | 1 cut(s) | 318 |
| SaqAI | TTAA | 1 cut(s) | 252 |
| Sau3AI | GATC | 1 cut(s) | 391 |
| ScrFI | CCNGG | 2 cut(s) | 272, 302 |
| SduI | GDGCHC | 1 cut(s) | 49 |
| SetI | ASST | 6 cut(s) | 49, 165, 276, 293, 362, 385 |
| SstI | GAGCTC | 1 cut(s) | 49 |
| StyD4I | CCNGG | 2 cut(s) | 270, 300 |
| StyI | CCWWGG | 1 cut(s) | 50 |
| TaiI | ACGT | 1 cut(s) | 362 |
| TaqI | TCGA | 4 cut(s) | 56, 174, 286, 385 |
| TfiI | GAWTC | 3 cut(s) | 128, 281, 329 |
| Tru1I | TTAA | 1 cut(s) | 252 |
| Tru9I | TTAA | 1 cut(s) | 252 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 372 |
| XmnI | GAANNNNTTC | 1 cut(s) | 292 |