Rw5G032890

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000063
Physical Location & Seq
Forward (+)
55818038 .. 55821206
3169 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G032890.1

Sequence Viewer

Length: 2394 bp
ATGTGTTTTTGGAGTTCTCAAACAAACTCTCTGGAGCTTCAATTTGGTGCACTTAGTCCGACCTTGATTGATATAGCGGCCATTATAGGCCTGCCGCCACATGGGCAAGTGGTGGACATTGTATTTGCAGAAGGAAAGTTTGACATTGATCTTGGTGGTGAGCTAAGAGATCGAAGTAAGGGCAGACCAGCCGTTGCCAATTATAATACATGGATTGAGGTGTTTAACAGCGGCTTGGGAAATAAGTCACTTGATAGTATTGGCAGTCCAGAAGAGAAAGAGGAAAACCAGCAGGAGACAATGGAAGTAACTCATGTAGAGCATGCTGCGTTTCTTGCCTTTTGGATATGTAAGTACTTAGTGTGCACAACTTCTAAAAAAGTGAATGTGGAGTACAACAAGTTGGCTGAAGCATTAGCAAGTAAAGAAGTACAAGAGAGCGATCAGCCATTAGCTCTTGGTCCATTTGTGCTTGCCCACTTATACAGATGTCTTCACCATTGTGTGACCGAAGGACTGAACCCAAATTGGTCTGGGCCATTGTGGATTTTTCAGTTGTGGCTGCACACTTACTTTCCCACTTTCAGACAGCCGGGTTTAGCATTGGCCGTAGACACCACTCTTGGACAACAATTGGCTCCTCTTGATTTACTTACTCATTCGGCAGAAGAGTGTTTTGAGGTGTTGTTCAAGTGTCCAGAGTTTTCTGCAGAACAGTTTGCCGTTTGTTTCAGTAGGAAGTATCCATCCTACCTTGCAATGGATATCAGCCAACACGCCTCAGAAAGTGAGACGAGATGGGAGACTGCGTGTTCAGCTTGGAAGAGTGCAATAGGTATGAGGGATCTCTTCTGGGGTGCCTTGTCTGGTAAAACACTCAAGTGTGGAGTGGAGTTATATTCACCATCCTATTTCAGTCGTCAGTTGGGATATTATCAAGCTATACCGGCTCCGGTGCCGGAATCGTCAAACCGATATAGTTCATTGCGAGCCGTTTTCTCCAACAAGGACGACATTGAGCAGAATAACAAGGCGTTTGTGTACAACATGAGCTTTCCCATGAAGACAAGAGTAGCAACTAGCAAGAGTTCCTCCCAGTTCAGAGAGTGGTGGGCGAAACGAGTAGGTAGCCGCTTTAAAGATGGGTTGGTGTCGGCTAGGCGATCGGCTTTTGCAGGGAATCCATGGGCACAAGAGAAGCCGAAAGCTGTAAGGCGTGGTAAAATAACAAGCAAAGTTGCTAGAGCAATCCCAACTATAAGTGGCCAAGAGTCTTTGAAGAAGTGTGCTAAAGGGAGCACAAAGAGAAAGGCCATCCATAGTGCGGCCACTGAGGCGGCCAAAGATGGTACTACCATGTCTTCAACGTCTCAATCTCCTCCAGCGAAACAACCGGCAAAACAAAACGAGCAATCCTCTGAGAGCGAAGAACAATTGTGCGTGGCCAAACGAAGTTGCCTAGAGACATTCAAGAAGGCCAGCGTCCAAAATGCCATTCCAAGTGAAACAGAGGAATCCGTTGAACTAACCATTGATAAAGATGGCCAACCAAGTAGTGACGAACCTGTTGGGGAGATAATTTCTCTTGAAAGAATGGCTGAAAGCGAAGTTGTGACAATGAATATGGAAGAAACACTTGTGCTCACCCAAACTTCAACGCAAGCCAGTATTCCCTCCTCGTCGCTTAGTGAGCAACACCTGGTGTTGGCTAACGAATTAGAAGGTAATCAAGGGTTTGAAGCCGAACTTCAGGCTTTCATGAGGGCATTTTCGGCCGATGCTCTAATCCAACCAGAATGCTGCTCGGCCATTTTGCAGTTACCAACCGCACACTTGACATCAAGGGAGGAAGTTGATGGGGCTCTGAAGGTGGTAAAGGAAGCGTTAGCGCAGCCATTAAAAGAATTTGTGGAAACAGGCCAACTATCAAAAGTGAAAGTGGCCATGGATTTGTTACTTGGAGCCAAATACTTTGCCCCTCCCAAGGTAGCTCTCATTGGTGAGAAGCTAGAAGTGTTGACCCAACAAATATCCCGTGTAGCTGGTTCATACCAAGAAATAGAAAAAAGGAGACAACAAATCTTGGCTTGTGGGCAAATGAAGAAAGCCTTGGTTCCAGAGTTTGGGTGGTGTATGGAACAAAAACGGGTTGTGGAGTCTCTTGAAGGCAAGATAAATGAGTTGGAAAGACAATTGGCATCCTTGAAACAAGAGAGACAAGAAGTGGGGGAAAAACTCCTTCAAAGGAGTAAGCAGTGTTTCCAAAGCCAAGGACAACTGAAGAAGATAGAGGCCGATTTGAAAACTTCTGAGCCTAGGTGTATGCAACTTGAGAGTGACCTTCAGGACACTAGTTGTACCTTGGGAGCTCTTAAAGCTTTATTAGCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

797

Amino Acids

88.4

Weight (kDa)

5.86

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 3 - 371 1.6e-28 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 204
AccB1I GGYRCC 2 cut(s) 857, 955
AccB7I CCANNNNNTGG 1 cut(s) 2123
AccI GTMKAC 1 cut(s) 612
AciI CCGC 7 cut(s) 77, 95, 231, 1132, 1325, 1337, 1827
AclWI GGATC 1 cut(s) 852
AcsI RAATTY 1 cut(s) 1904
AcuI CTGAAG 5 cut(s) 429, 1733, 1886, 2300, 2327
AdeI CACNNNGTG 1 cut(s) 1702
AfaI GTAC 6 cut(s) 356, 395, 432, 1043, 1351, 2359
AfiI CCNNNNNNNGG 6 cut(s) 101, 760, 1324, 1705, 1984, 2123
AhlI ACTAGT 1 cut(s) 2351
AjnI CCWGG 1 cut(s) 1698
AjuI GAANNNNNNNTTGG 4 cut(s) 1479, 1511, 2093, 2125
AleI CACNNNNGTG 2 cut(s) 501, 880
Alw21I GWGCWC 5 cut(s) 52, 368, 1301, 1644, 2371
Alw26I GTCTC 8 cut(s) 290, 785, 797, 1374, 1457, 2065, 2163, 2209
Alw44I GTGCAC 2 cut(s) 48, 364
AlwI GGATC 1 cut(s) 852
ApaLI GTGCAC 2 cut(s) 48, 364
ApeKI GCWGC 4 cut(s) 326, 562, 1800, 1891
ApoI RAATTY 1 cut(s) 1904
ArsI GACNNNNNNTTYG 2 cut(s) 107, 139
AspA2I CCTAGG 1 cut(s) 2315
AspLEI GCGC 1 cut(s) 1891
AspS9I GGNCC 2 cut(s) 461, 536
AsuC2I CCSGG 1 cut(s) 594
AsuHPI GGTGA 5 cut(s) 170, 488, 894, 1636, 2012
AvaII GGWCC 1 cut(s) 461
AvrII CCTAGG 1 cut(s) 2315
BaeGI GKGCMC 3 cut(s) 52, 368, 1192
BalI TGGCCA 4 cut(s) 1266, 1445, 1545, 1943
BanI GGYRCC 2 cut(s) 857, 955
BanII GRGCYC 2 cut(s) 1864, 2371
BbsI GAAGAC 3 cut(s) 485, 1070, 1353
Bbv12I GWGCWC 5 cut(s) 52, 368, 1301, 1644, 2371
BbvI GCAGC 4 cut(s) 313, 549, 1787, 1903
BccI CCATC 8 cut(s) 754, 792, 913, 1136, 1322, 1340, 1535, 1850
BceAI ACGGC 4 cut(s) 176, 593, 707, 977
BciT130I CCWGG 1 cut(s) 1700
BciVI GTATCC 1 cut(s) 753
BcnI CCSGG 1 cut(s) 594
BcoDI GTCTC 8 cut(s) 290, 785, 797, 1374, 1457, 2065, 2163, 2209
BcuI ACTAGT 1 cut(s) 2351
BfaI CTAG 7 cut(s) 1080, 1158, 1242, 1460, 2009, 2316, 2352
BfmI CTRYAG 1 cut(s) 708
BfuI GTATCC 1 cut(s) 753
BglI GCCNNNNNGGC 2 cut(s) 103, 1334
BlnI CCTAGG 1 cut(s) 2315
BmcAI AGTACT 1 cut(s) 356
Bme1390I CCNGG 2 cut(s) 594, 1700
Bme18I GGWCC 1 cut(s) 461
BmgT120I GGNCC 2 cut(s) 461, 536
BmiI GGNNCC 6 cut(s) 639, 859, 951, 957, 1963, 2115
BmrFI CCNGG 2 cut(s) 594, 1700
BmrI ACTGGG 1 cut(s) 1090
BmsI GCATC 2 cut(s) 1768, 2207
BmuI ACTGGG 1 cut(s) 1090
BpiI GAAGAC 3 cut(s) 485, 1070, 1353
BplI GAGNNNNNCTC 2 cut(s) 1400, 1432
BpmI CTGGAG 2 cut(s) 53, 1365
BpuEI CTTGAG 2 cut(s) 863, 2351
BpuMI CCSGG 1 cut(s) 594
BsaJI CCNNGG 7 cut(s) 1184, 1944, 1983, 2109, 2269, 2315, 2361
BsaWI WCCGGW 1 cut(s) 952
BsaXI ACNNNNNCTCC 2 cut(s) 794, 824
Bsc4I CCNNNNNNNGG 6 cut(s) 101, 760, 1324, 1705, 1984, 2123
Bse118I RCCGGY 2 cut(s) 946, 1393
Bse1I ACTGG 2 cut(s) 1096, 1665
Bse3DI GCAATG 2 cut(s) 765, 983
BseBI CCWGG 1 cut(s) 1700
BseDI CCNNGG 7 cut(s) 1184, 1944, 1983, 2109, 2269, 2315, 2361
BseGI GGATG 4 cut(s) 746, 905, 1314, 2198
BseLI CCNNNNNNNGG 6 cut(s) 101, 760, 1324, 1705, 1984, 2123
BseMI GCAATG 2 cut(s) 765, 983
BseMII CTCAG 4 cut(s) 795, 1323, 1410, 2301
BseNI ACTGG 2 cut(s) 1096, 1665
BseRI GAGGAG 3 cut(s) 630, 1368, 1666
BseSI GKGCMC 3 cut(s) 52, 368, 1192
BseX3I CGGCCG 1 cut(s) 1773
BseXI GCAGC 4 cut(s) 313, 549, 1787, 1903
BsgI GTGCAG 1 cut(s) 548
Bsh1285I CGRYCG 2 cut(s) 1166, 1776
BshNI GGYRCC 2 cut(s) 857, 955
BsiEI CGRYCG 2 cut(s) 1166, 1776
BsiHKAI GWGCWC 5 cut(s) 52, 368, 1301, 1644, 2371
BsiSI CCGG 5 cut(s) 593, 947, 953, 959, 1394
BslI CCNNNNNNNGG 6 cut(s) 101, 760, 1324, 1705, 1984, 2123
BsmAI GTCTC 8 cut(s) 290, 785, 797, 1374, 1457, 2065, 2163, 2209
BsmBI CGTCTC 2 cut(s) 785, 1374
BsmI GAATGC 1 cut(s) 1802
Bsp1286I GDGCHC 7 cut(s) 52, 368, 1192, 1301, 1644, 1864, 2371
Bsp1407I TGTACA 1 cut(s) 1041
Bsp143I GATC 5 cut(s) 148, 169, 442, 844, 1163
Bsp19I CCATGG 2 cut(s) 1184, 1944
BspACI CCGC 7 cut(s) 77, 95, 231, 1132, 1325, 1337, 1827
BspCNI CTCAG 4 cut(s) 794, 1324, 1411, 2302
BspHI TCATGA 1 cut(s) 1758
BspLI GGNNCC 6 cut(s) 639, 859, 951, 957, 1963, 2115
BspMAI CTGCAG 1 cut(s) 712
BspPI GGATC 1 cut(s) 852
BspT107I GGYRCC 2 cut(s) 857, 955
BsrDI GCAATG 2 cut(s) 765, 983
BsrFI RCCGGY 2 cut(s) 946, 1393
BsrGI TGTACA 1 cut(s) 1041
BsrI ACTGG 2 cut(s) 1096, 1665
BssAI RCCGGY 2 cut(s) 946, 1393
BssECI CCNNGG 7 cut(s) 1184, 1944, 1983, 2109, 2269, 2315, 2361
BssMI GATC 5 cut(s) 148, 169, 442, 844, 1163
BssT1I CCWWGG 7 cut(s) 1184, 1944, 1983, 2109, 2269, 2315, 2361
Bst2UI CCWGG 1 cut(s) 1700
Bst4CI ACNGT 1 cut(s) 717
Bst6I CTCTTC 4 cut(s) 267, 663, 818, 854
BstAUI TGTACA 1 cut(s) 1041
BstC8I GCNNGC 6 cut(s) 92, 324, 474, 990, 1480, 1662
BstDEI CTNAG 8 cut(s) 53, 164, 358, 781, 1332, 1419, 1685, 2310
BstDSI CCRYGG 2 cut(s) 1184, 1944
BstF5I GGATG 4 cut(s) 746, 905, 1314, 2198
BstHHI GCGC 1 cut(s) 1891
BstKTI GATC 5 cut(s) 151, 172, 445, 847, 1166
BstMAI GTCTC 8 cut(s) 290, 785, 797, 1374, 1457, 2065, 2163, 2209
BstMBI GATC 5 cut(s) 148, 169, 442, 844, 1163
BstMCI CGRYCG 2 cut(s) 1166, 1776
BstMWI GCNNNNNNNGC 9 cut(s) 103, 335, 815, 947, 1334, 1690, 1772, 2375, 2384
BstNI CCWGG 1 cut(s) 1700
BstNSI RCATGY 1 cut(s) 326
BstSCI CCNGG 2 cut(s) 592, 1698
BstSFI CTRYAG 1 cut(s) 708
BstSLI GKGCMC 3 cut(s) 52, 368, 1192
BstV1I GCAGC 4 cut(s) 313, 549, 1787, 1903
BstV2I GAAGAC 3 cut(s) 485, 1070, 1353
BstX2I RGATCY 1 cut(s) 844
BstYI RGATCY 1 cut(s) 844
BstZI CGGCCG 1 cut(s) 1773
BsuI GTATCC 1 cut(s) 753
BtgI CCRYGG 2 cut(s) 1184, 1944
BtsCI GGATG 4 cut(s) 746, 905, 1314, 2198
BtsI GCAGTG 1 cut(s) 2261
BtsIMutI CAGTG 2 cut(s) 1329, 2261
Cac8I GCNNGC 6 cut(s) 92, 324, 474, 990, 1480, 1662
CciI TCATGA 1 cut(s) 1758
CfoI GCGC 1 cut(s) 1891
Cfr10I RCCGGY 2 cut(s) 946, 1393
Cfr13I GGNCC 2 cut(s) 461, 536
CseI GACGC 1 cut(s) 1471
CsiI ACCWGGT 1 cut(s) 1698
Csp6I GTAC 6 cut(s) 355, 394, 431, 1042, 1350, 2358
CviQI GTAC 6 cut(s) 355, 394, 431, 1042, 1350, 2358
DdeI CTNAG 8 cut(s) 53, 164, 358, 781, 1332, 1419, 1685, 2310
DpnI GATC 5 cut(s) 150, 171, 444, 846, 1165
DpnII GATC 5 cut(s) 148, 169, 442, 844, 1163
DraI TTTAAA 1 cut(s) 1138
DraIII CACNNNGTG 1 cut(s) 1702
EagI CGGCCG 1 cut(s) 1773
Eam1104I CTCTTC 4 cut(s) 267, 663, 818, 854
EarI CTCTTC 4 cut(s) 267, 663, 818, 854
Ecl136II GAGCTC 1 cut(s) 2369
EclXI CGGCCG 1 cut(s) 1773
Eco130I CCWWGG 7 cut(s) 1184, 1944, 1983, 2109, 2269, 2315, 2361
Eco147I AGGCCT 1 cut(s) 90
Eco24I GRGCYC 2 cut(s) 1864, 2371
Eco32I GATATC 1 cut(s) 766
Eco47I GGWCC 1 cut(s) 461
Eco52I CGGCCG 1 cut(s) 1773
Eco53kI GAGCTC 1 cut(s) 2369
Eco57I CTGAAG 5 cut(s) 429, 1733, 1886, 2300, 2327
EcoICRI GAGCTC 1 cut(s) 2369
EcoRII CCWGG 1 cut(s) 1698
EcoRV GATATC 1 cut(s) 766
EcoT14I CCWWGG 7 cut(s) 1184, 1944, 1983, 2109, 2269, 2315, 2361
EcoT38I GRGCYC 2 cut(s) 1864, 2371
ErhI CCWWGG 7 cut(s) 1184, 1944, 1983, 2109, 2269, 2315, 2361
Esp3I CGTCTC 2 cut(s) 785, 1374
FalI AAGNNNNNCTT 6 cut(s) 1620, 1652, 1731, 1763, 2093, 2125
FblI GTMKAC 1 cut(s) 612
FokI GGATG 4 cut(s) 733, 892, 1301, 2185
FriOI GRGCYC 2 cut(s) 1864, 2371
FspBI CTAG 7 cut(s) 1080, 1158, 1242, 1460, 2009, 2316, 2352
GlaI GCGC 1 cut(s) 1890
GsuI CTGGAG 2 cut(s) 53, 1365
HapII CCGG 5 cut(s) 593, 947, 953, 959, 1394
HgaI GACGC 1 cut(s) 1471
HhaI GCGC 1 cut(s) 1891
Hin6I GCGC 1 cut(s) 1889
HinP1I GCGC 1 cut(s) 1889
HincII GTYRAC 1 cut(s) 2019
HindII GTYRAC 1 cut(s) 2019
HindIII AAGCTT 1 cut(s) 2376
HinfI GANTC 5 cut(s) 962, 1180, 1271, 1514, 2156
HpaII CCGG 5 cut(s) 593, 947, 953, 959, 1394
HphI GGTGA 5 cut(s) 170, 488, 894, 1636, 2012
Hpy166II GTNNAC 6 cut(s) 50, 115, 366, 613, 1042, 2019
Hpy188I TCNGA 7 cut(s) 60, 587, 784, 1103, 1420, 1866, 2311
Hpy8I GTNNAC 6 cut(s) 50, 115, 366, 613, 1042, 2019
Hpy99I CGWCG 1 cut(s) 1684
HpyAV CCTTC 8 cut(s) 125, 506, 1468, 1715, 1861, 2159, 2249, 2351
HpyCH4III ACNGT 1 cut(s) 717
HpyCH4IV ACGT 1 cut(s) 1367
HpyF10VI GCNNNNNNNGC 9 cut(s) 103, 335, 815, 947, 1334, 1690, 1772, 2375, 2384
HpyF3I CTNAG 8 cut(s) 53, 164, 358, 781, 1332, 1419, 1685, 2310
HpySE526I ACGT 1 cut(s) 1367
HspAI GCGC 1 cut(s) 1889
Kzo9I GATC 5 cut(s) 148, 169, 442, 844, 1163
LmnI GCTCC 6 cut(s) 34, 643, 955, 1296, 1961, 2366
Lsp1109I GCAGC 4 cut(s) 313, 549, 1787, 1903
LweI GCATC 2 cut(s) 1768, 2207
MabI ACCWGGT 1 cut(s) 1698
MaeI CTAG 7 cut(s) 1080, 1158, 1242, 1460, 2009, 2316, 2352
MaeII ACGT 1 cut(s) 1367
MaeIII GTNAC 8 cut(s) 246, 307, 505, 1556, 1612, 1818, 1953, 2336
MalI GATC 5 cut(s) 150, 171, 444, 846, 1165
MboI GATC 5 cut(s) 148, 169, 442, 844, 1163
MfeI CAATTG 3 cut(s) 632, 1433, 2192
MflI RGATCY 1 cut(s) 844
MhlI GDGCHC 7 cut(s) 52, 368, 1192, 1301, 1644, 1864, 2371
MlsI TGGCCA 4 cut(s) 1266, 1445, 1545, 1943
MluCI AATT 9 cut(s) 41, 199, 526, 632, 1433, 1578, 1715, 1904, 2192
MluNI TGGCCA 4 cut(s) 1266, 1445, 1545, 1943
MlyI GAGTC 2 cut(s) 1280, 2165
MmeI TCCRAC 4 cut(s) 83, 1026, 1813, 2163
Mox20I TGGCCA 4 cut(s) 1266, 1445, 1545, 1943
MscI TGGCCA 4 cut(s) 1266, 1445, 1545, 1943
MseI TTAA 4 cut(s) 225, 1137, 1898, 2373
MslI CAYNNNNRTG 2 cut(s) 501, 880
Msp20I TGGCCA 4 cut(s) 1266, 1445, 1545, 1943
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 5 cut(s) 593, 947, 953, 959, 1394
MspR9I CCNGG 2 cut(s) 594, 1700
MunI CAATTG 3 cut(s) 632, 1433, 2192
Mva1269I GAATGC 1 cut(s) 1802
MvaI CCWGG 1 cut(s) 1700
MwoI GCNNNNNNNGC 9 cut(s) 103, 335, 815, 947, 1334, 1690, 1772, 2375, 2384
NciI CCSGG 1 cut(s) 594
NcoI CCATGG 2 cut(s) 1184, 1944
NdeII GATC 5 cut(s) 148, 169, 442, 844, 1163
NlaIV GGNNCC 6 cut(s) 639, 859, 951, 957, 1963, 2115
NmeAIII GCCGAG 1 cut(s) 1784
NmuCI GTSAC 5 cut(s) 246, 505, 1556, 1612, 2336
NspI RCATGY 1 cut(s) 326
OliI CACNNNNGTG 2 cut(s) 501, 880
PaeI GCATGC 1 cut(s) 326
PagI TCATGA 1 cut(s) 1758
PceI AGGCCT 1 cut(s) 90
PctI GAATGC 1 cut(s) 1802
PfeI GAWTC 3 cut(s) 962, 1180, 1514
PflMI CCANNNNNTGG 1 cut(s) 2123
Ple19I CGATCG 1 cut(s) 1166
PleI GAGTC 2 cut(s) 1279, 2164
PpsI GAGTC 2 cut(s) 1279, 2164
PsiI TTATAA 1 cut(s) 204
Psp124BI GAGCTC 1 cut(s) 2371
Psp6I CCWGG 1 cut(s) 1698
PspGI CCWGG 1 cut(s) 1698
PspN4I GGNNCC 6 cut(s) 639, 859, 951, 957, 1963, 2115
PspPI GGNCC 2 cut(s) 461, 536
PstI CTGCAG 1 cut(s) 712
PsuI RGATCY 1 cut(s) 844
PvuI CGATCG 1 cut(s) 1166
RsaI GTAC 6 cut(s) 356, 395, 432, 1043, 1351, 2359
RsaNI GTAC 6 cut(s) 355, 394, 431, 1042, 1350, 2358
RseI CAYNNNNRTG 2 cut(s) 501, 880
SacI GAGCTC 1 cut(s) 2371
SaqAI TTAA 4 cut(s) 225, 1137, 1898, 2373
Sau3AI GATC 5 cut(s) 148, 169, 442, 844, 1163
Sau96I GGNCC 2 cut(s) 461, 536
ScaI AGTACT 1 cut(s) 356
SchI GAGTC 2 cut(s) 1280, 2165
ScrFI CCNGG 2 cut(s) 594, 1700
SduI GDGCHC 7 cut(s) 52, 368, 1192, 1301, 1644, 1864, 2371
SexAI ACCWGGT 1 cut(s) 1698
SfaNI GCATC 2 cut(s) 1768, 2207
SfcI CTRYAG 1 cut(s) 708
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 2 cut(s) 501, 880
SmlI CTYRAG 2 cut(s) 878, 2330
SmoI CTYRAG 2 cut(s) 878, 2330
SpeI ACTAGT 1 cut(s) 2351
SphI GCATGC 1 cut(s) 326
Sse9I AATT 9 cut(s) 41, 199, 526, 632, 1433, 1578, 1715, 1904, 2192
SseBI AGGCCT 1 cut(s) 90
SsiI CCGC 7 cut(s) 77, 95, 231, 1132, 1325, 1337, 1827
SspMI CTAG 7 cut(s) 1080, 1158, 1242, 1460, 2009, 2316, 2352
SstI GAGCTC 1 cut(s) 2371
StuI AGGCCT 1 cut(s) 90
StyD4I CCNGG 2 cut(s) 592, 1698
StyI CCWWGG 7 cut(s) 1184, 1944, 1983, 2109, 2269, 2315, 2361
TaaI ACNGT 1 cut(s) 717
TaiI ACGT 1 cut(s) 1370
TaqI TCGA 1 cut(s) 172
TaqII GACCGA 1 cut(s) 524
TasI AATT 9 cut(s) 41, 199, 526, 632, 1433, 1578, 1715, 1904, 2192
TatI WGTACW 4 cut(s) 354, 393, 430, 1041
TauI GCSGC 6 cut(s) 80, 97, 234, 1134, 1328, 1340
TfiI GAWTC 3 cut(s) 962, 1180, 1514
Tru1I TTAA 4 cut(s) 225, 1137, 1898, 2373
Tru9I TTAA 4 cut(s) 225, 1137, 1898, 2373
TscAI CASTG 2 cut(s) 1336, 2261
TseFI GTSAC 5 cut(s) 246, 505, 1556, 1612, 2336
TseI GCWGC 4 cut(s) 326, 562, 1800, 1891
Tsp45I GTSAC 5 cut(s) 246, 505, 1556, 1612, 2336
TspDTI ATGAA 6 cut(s) 972, 1076, 1634, 1747, 2037, 2114
TspGWI ACGGA 1 cut(s) 1507
TspRI CASTG 2 cut(s) 1336, 2261
Van91I CCANNNNNTGG 1 cut(s) 2123
VneI GTGCAC 2 cut(s) 48, 364
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 1 cut(s) 1904
XceI RCATGY 1 cut(s) 326
XcmI CCANNNNNNNNNTGG 1 cut(s) 2124
XmaJI CCTAGG 1 cut(s) 2315
XmiI GTMKAC 1 cut(s) 612
XspI CTAG 7 cut(s) 1080, 1158, 1242, 1460, 2009, 2316, 2352
ZrmI AGTACT 1 cut(s) 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.