Rh5CG137700

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000063
Physical Location & Seq
Forward (+)
11498846 .. 11502823
3978 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG137700.1

Sequence Viewer

Length: 2424 bp
ATGCTTCCTTATTACGGTGATCACTGGAAGAAGGCCAACATCTACGACCCAATAATGCTCTCCGCCAGGCGCTTCTTCCCCGACAAGGCTCTCCTCAGCGCTGCGTTTTGCTTTTGGAACTCATCATCCAACACTATGGACTTGCCTCTCGGGATGGTGAGTGTGAGTCTGCTTGACGTTGCTGCCATTGCTGGGTTTAGGCCTCATGGCACCGCTTATGACTGCACTGCTCCGTTGAAGCCCAAAACCAAGTTTAGGTGTGGTCGGCACTTCGAATATGGGAGTTGGATAGACTATCATAATAGTGACAAAAGCAACAAAGTTGTCGATCAAGAGCACATAGCGTTCCTCCTCTACTGGCTCTGTAGGTATGTCTTCTGTGTACCTTCAGGGATTAGTAAAGAGTGGTCTCATTTGGCAGAAGTTTTGCATCGAGGAACTGATGTGGCCTTAGGTGAGTTGGTGCTAGCCTCACTGTACAGGGGTTTGCAGAAAATCACTGTCAACCCATTTGATGGTAAAGCTGAGGGGCCACTTTGGCTGTTCCAAATGTGGTTACAGATTTACTTCCCAGACCTAGGCCCGGTTAGTGCATTTCCTGCCGAGGAGGTTATGGGGGTTAGGTTGACAGACCAAGTCCCAAAACCACACTCCCCTCGTGATTGCTTTGCAACGTTGTGGAGTTTGAAATCAAACCCATGTTGGACGCACACCTTGACGAGAAGGTATCCCGGTTTCCTAAGGAATAGGTTCATGGATGGTCCAACCTCTGATGGTGCCTTAGATGAGGAAATACAAGCTGTGCTAACGAGTGTGGTGGTGCAGAGAGATCTGCTGTATGGAGGGATGAAAAATGGTAGATATTATGGAGTCCAGGCCGAATTTTACGGCCCGAACCATTTCAGTAGGCAGTTTCGTTTCCTACAAGGAATTCCTCACTCTGGTCATAAAAGCGTTAATTGTTATACCTCATGGAGGGATGTACTAAAAGATGCTGCGGAAATCAGAGGCGTGTTAAATTCCAGTCGTTCCACTAAGTTGAAACCATTCCTCACCAGGTATGTGCTAACCTCTGAAACTACCCCAGGCTTTGACAAATGGTGGCATAGTCAAACCAAAGATCGATTTTCGGTAGAACATGATGGGCCCTTTGCTATCTTATATATGCATTGTCCGTTCCGGGATAGCCATCATCTAGAAGTTCCAGGCTTTTCCCCTGCTGATGGAGAAAGGGAAGAAGGTGAAGAGGGAGAAGCTAAAGTTGAAAGCCCTCTCCCTACTGACAAGAATCGAAAGAGGAAAGGCAACACAAATGCTCCAAAATCAGCTAGGCAGAAGACTACTCAAGTCACAGTATCTGGAATGAAGACAAATGGATCCAATAATGAAGAAGCAGAGGAAATTGATGGCCGTCATACCCTGAATGTTGATGGCTTGTCTGGAGCTCAAATTAAGGAATCCACTGTTGACCACCAAAATGCTGTTGTTAAGCCAAAATATATAACTTCAACTTCTAAAAATACCTTCAGATCTATGAAAAAGCTGAGGTCAGATTTTTCAAGTGACACTTCTGAAAACGCTGATAACATCGGAACTGAAGAACCTGAACAGACTGAAGGGCCATTGATGGGAACTGGGGAGTTAGGAAGTAAACAAATGTATAGCGATGCTGCTGCCTTCGAAACTGCCCCCTTACTTACCAGTATGCACCCAGCTCAAAGTGAGCCAACCACGCCAGTTCAAGGATTACTAGACGGCAATGTGAGGACCCTCTCAAGAGAGGAAAAGTTGAAAAAGTTTGAAAATATTGAAAATAGTGTGGCAAACTCATCTGTCGAAGCTTCCAAAGCTGAAGATGATCATGCTTATTCCGTTATTGACGATGTGGTGGTTCGAGGCACGAGGGCGATTTTTCATGATGGCCAGGTCCCAACATACCTAAGAGAGGCATTAAATTATGTTAGAGGCAGAAGTTGGCTAAGCCATGTTTTGATTGATGCTCTTGATGAGTATTTTAAGGAGCTTAATTGCGCCCAGACGAAAATGACTATGAATTCCAATAAGTTAACGTTGCTCGAAGATGAAGTTCGACGAGATAAGGACATCAGGGATAAGCTGGATAAAGCTTCAAATGAAGGAAAGCAATTGCAAATTGCAGCAATACAAAGTGCGGAGGAAATTTCTCGACTTGATGAAGAAATAAAGGTACTTAAAGCAGAGAGAGAGGAGGAAGAGCGTATGATGGCACTAGATAAAAATATTATTGATGAGAAATTTGCACTCATTAGTTCCTTTGAACTTGAAATGTCCAAGCTCCCCGATCGTGGTTCTGAAATGATTGCCTGCCAAATAAAGGATAAACTTTACGACATGAGGAGTGACTCTATACGTCGGGCCATAAACGAGCTACTTTCTAATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

807

Amino Acids

91.23

Weight (kDa)

5.97

Isoelectric Point (pI)

43.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 14 - 336 4.3e-28 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 209, 776
AccB7I CCANNNNNTGG 1 cut(s) 515
AciI CCGC 4 cut(s) 63, 213, 998, 2171
AclI AACGTT 2 cut(s) 674, 2069
AclWI GGATC 2 cut(s) 1371, 1384
AcoI YGGCCR 2 cut(s) 1408, 1921
AcsI RAATTY 6 cut(s) 881, 930, 1018, 2053, 2178, 2273
AcuI CTGAAG 5 cut(s) 372, 1510, 1617, 1635, 1872
AfaI GTAC 4 cut(s) 384, 479, 984, 2208
AfeI AGCGCT 1 cut(s) 100
AjnI CCWGG 6 cut(s) 65, 873, 1055, 1084, 1204, 1923
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
Alw21I GWGCWC 2 cut(s) 339, 1447
Alw26I GTCTC 1 cut(s) 414
AlwI GGATC 2 cut(s) 1371, 1384
AlwNI CAGNNNCTG 1 cut(s) 1358
Ama87I CYCGRG 1 cut(s) 149
Aor51HI AGCGCT 1 cut(s) 100
ApaI GGGCCC 1 cut(s) 1149
ApeKI GCWGC 6 cut(s) 101, 182, 995, 1670, 1673, 2156
ApoI RAATTY 6 cut(s) 881, 930, 1018, 2053, 2178, 2273
Asp700I GAANNNNTTC 3 cut(s) 749, 899, 1046
AspA2I CCTAGG 1 cut(s) 577
AspLEI GCGC 3 cut(s) 72, 101, 2033
AsuC2I CCSGG 3 cut(s) 584, 732, 1181
AsuHPI GGTGA 5 cut(s) 29, 169, 467, 1045, 1253
AsuII TTCGAA 2 cut(s) 273, 1680
AsuNHI GCTAGC 1 cut(s) 466
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 3 cut(s) 761, 1767, 1927
AvrII CCTAGG 1 cut(s) 577
AxyI CCTNAGG 2 cut(s) 451, 740
BaeGI GKGCMC 1 cut(s) 1149
BalI TGGCCA 1 cut(s) 1923
BamHI GGATCC 1 cut(s) 1376
BanI GGYRCC 2 cut(s) 209, 776
BanII GRGCYC 2 cut(s) 1149, 1447
BauI CACGAG 2 cut(s) 657, 1900
BbsI GAAGAC 3 cut(s) 367, 1343, 1373
Bbv12I GWGCWC 2 cut(s) 339, 1447
BbvCI CCTCAGC 3 cut(s) 95, 525, 1544
BbvI GCAGC 6 cut(s) 88, 169, 982, 1657, 1660, 2168
BceAI ACGGC 3 cut(s) 904, 1395, 1771
BcgI CGANNNNNNTGC 2 cut(s) 1655, 1689
BciT130I CCWGG 6 cut(s) 67, 875, 1057, 1086, 1206, 1925
BciVI GTATCC 1 cut(s) 738
BclI TGATCA 2 cut(s) 19, 1858
BcnI CCSGG 3 cut(s) 584, 732, 1181
BcoDI GTCTC 1 cut(s) 414
BfaI CTAG 6 cut(s) 467, 578, 1196, 1329, 1751, 2249
BfmI CTRYAG 1 cut(s) 364
BfoI RGCGCY 2 cut(s) 73, 102
BfuI GTATCC 1 cut(s) 738
BglI GCCNNNNNGGC 1 cut(s) 538
BglII AGATCT 2 cut(s) 829, 1529
BisI GCNGC 6 cut(s) 102, 183, 996, 1671, 1674, 2157
BlnI CCTAGG 1 cut(s) 577
BlpI GCTNAGC 1 cut(s) 1979
BlsI GCNGC 6 cut(s) 103, 184, 997, 1672, 1675, 2158
Bme1390I CCNGG 9 cut(s) 67, 584, 732, 875, 1057, 1086, 1181, 1206, 1925
Bme18I GGWCC 3 cut(s) 761, 1767, 1927
BmeT110I CYCGRG 1 cut(s) 149
BmiI GGNNCC 7 cut(s) 211, 531, 778, 1147, 1378, 1769, 1929
BmrFI CCNGG 9 cut(s) 67, 584, 732, 875, 1057, 1086, 1181, 1206, 1925
BmrI ACTGGG 1 cut(s) 1644
BmsI GCATC 4 cut(s) 439, 982, 1657, 1987
BmtI GCTAGC 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 1644
BpiI GAAGAC 3 cut(s) 367, 1343, 1373
BpmI CTGGAG 1 cut(s) 1461
Bpu10I CCTNAGC 3 cut(s) 95, 525, 1544
Bpu1102I GCTNAGC 1 cut(s) 1979
Bpu14I TTCGAA 2 cut(s) 273, 1680
BpuEI CTTGAG 2 cut(s) 1329, 1759
BpuMI CCSGG 3 cut(s) 584, 732, 1181
Bsa29I ATCGAT 1 cut(s) 1123
BsaBI GATNNNNATC 1 cut(s) 1188
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 3 cut(s) 577, 603, 1084
BsaXI ACNNNNNCTCC 2 cut(s) 1300, 1330
Bse1I ACTGG 6 cut(s) 29, 362, 1023, 1639, 1701, 1736
Bse21I CCTNAGG 2 cut(s) 451, 740
Bse3DI GCAATG 2 cut(s) 186, 1765
Bse8I GATNNNNATC 1 cut(s) 1188
BseBI CCWGG 6 cut(s) 67, 875, 1057, 1086, 1206, 1925
BseCI ATCGAT 1 cut(s) 1123
BseDI CCNNGG 3 cut(s) 577, 603, 1084
BseGI GGATG 5 cut(s) 125, 159, 763, 852, 985
BseJI GATNNNNATC 1 cut(s) 1188
BseMI GCAATG 2 cut(s) 186, 1765
BseMII CTCAG 3 cut(s) 109, 516, 1535
BseNI ACTGG 6 cut(s) 29, 362, 1023, 1639, 1701, 1736
BseRI GAGGAG 5 cut(s) 83, 341, 620, 2240, 2389
BseSI GKGCMC 1 cut(s) 1149
BseXI GCAGC 6 cut(s) 88, 169, 982, 1657, 1660, 2168
BseYI CCCAGC 2 cut(s) 191, 1711
BsgI GTGCAG 2 cut(s) 208, 842
Bsh1285I CGRYCG 1 cut(s) 2323
BshNI GGYRCC 2 cut(s) 209, 776
BshVI ATCGAT 1 cut(s) 1123
BsiEI CGRYCG 1 cut(s) 2323
BsiHKAI GWGCWC 2 cut(s) 339, 1447
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 3 cut(s) 584, 732, 1180
BslFI GGGAC 2 cut(s) 623, 1913
BsmAI GTCTC 1 cut(s) 414
BsmFI GGGAC 2 cut(s) 623, 1913
Bso31I GGTCTC 1 cut(s) 414
BsoBI CYCGRG 1 cut(s) 149
Bsp119I TTCGAA 2 cut(s) 273, 1680
Bsp120I GGGCCC 1 cut(s) 1145
Bsp1286I GDGCHC 3 cut(s) 339, 1149, 1447
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 8 cut(s) 19, 328, 829, 1120, 1376, 1529, 1858, 2320
Bsp1720I GCTNAGC 1 cut(s) 1979
BspACI CCGC 4 cut(s) 63, 213, 998, 2171
BspCNI CTCAG 3 cut(s) 108, 517, 1536
BspDI ATCGAT 1 cut(s) 1123
BspHI TCATGA 1 cut(s) 1915
BspLI GGNNCC 7 cut(s) 211, 531, 778, 1147, 1378, 1769, 1929
BspOI GCTAGC 1 cut(s) 470
BspPI GGATC 2 cut(s) 1371, 1384
BspQI GCTCTTC 1 cut(s) 2226
BspT104I TTCGAA 2 cut(s) 273, 1680
BspT107I GGYRCC 2 cut(s) 209, 776
BspTNI GGTCTC 1 cut(s) 414
BsrDI GCAATG 2 cut(s) 186, 1765
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 6 cut(s) 29, 362, 1023, 1639, 1701, 1736
BssECI CCNNGG 3 cut(s) 577, 603, 1084
BssMI GATC 8 cut(s) 19, 328, 829, 1120, 1376, 1529, 1858, 2320
BssSI CACGAG 2 cut(s) 657, 1900
BssT1I CCWWGG 1 cut(s) 577
Bst2BI CACGAG 2 cut(s) 657, 1900
Bst2UI CCWGG 6 cut(s) 67, 875, 1057, 1086, 1206, 1925
Bst4CI ACNGT 5 cut(s) 17, 477, 502, 1354, 1465
Bst6I CTCTTC 2 cut(s) 1239, 2226
BstAPI GCANNNNNTGC 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 477
BstBI TTCGAA 2 cut(s) 273, 1680
BstC8I GCNNGC 2 cut(s) 468, 2344
BstDEI CTNAG 9 cut(s) 95, 451, 525, 740, 781, 1035, 1544, 1940, 1979
BstENI CCTNNNNNAGG 2 cut(s) 973, 1943
BstF5I GGATG 5 cut(s) 125, 159, 763, 852, 985
BstH2I RGCGCY 2 cut(s) 73, 102
BstHHI GCGC 3 cut(s) 72, 101, 2033
BstKTI GATC 8 cut(s) 22, 331, 832, 1123, 1379, 1532, 1861, 2323
BstMAI GTCTC 1 cut(s) 414
BstMBI GATC 8 cut(s) 19, 328, 829, 1120, 1376, 1529, 1858, 2320
BstMCI CGRYCG 1 cut(s) 2323
BstMWI GCNNNNNNNGC 5 cut(s) 188, 538, 599, 1732, 1847
BstNI CCWGG 6 cut(s) 67, 875, 1057, 1086, 1206, 1925
BstSCI CCNGG 9 cut(s) 65, 582, 730, 873, 1055, 1084, 1179, 1204, 1923
BstSFI CTRYAG 1 cut(s) 364
BstSLI GKGCMC 1 cut(s) 1149
BstV1I GCAGC 6 cut(s) 88, 169, 982, 1657, 1660, 2168
BstV2I GAAGAC 3 cut(s) 367, 1343, 1373
BstX2I RGATCY 3 cut(s) 829, 1376, 1529
BstXI CCANNNNNNTGG 1 cut(s) 136
BstYI RGATCY 3 cut(s) 829, 1376, 1529
Bsu15I ATCGAT 1 cut(s) 1123
Bsu36I CCTNAGG 2 cut(s) 451, 740
BsuI GTATCC 1 cut(s) 738
BsuTUI ATCGAT 1 cut(s) 1123
BtgZI GCGATG 1 cut(s) 1680
BtsCI GGATG 5 cut(s) 125, 159, 763, 852, 985
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 5 cut(s) 22, 225, 473, 498, 1461
Cac8I GCNNGC 2 cut(s) 468, 2344
CaiI CAGNNNCTG 1 cut(s) 1358
CciI TCATGA 1 cut(s) 1915
CfoI GCGC 3 cut(s) 72, 101, 2033
ClaI ATCGAT 1 cut(s) 1123
CseI GACGC 1 cut(s) 715
CsiI ACCWGGT 1 cut(s) 1055
Csp6I GTAC 4 cut(s) 383, 478, 983, 2207
CviAII CATG 9 cut(s) 206, 699, 754, 972, 1139, 1862, 1916, 1985, 2371
CviQI GTAC 4 cut(s) 383, 478, 983, 2207
DdeI CTNAG 9 cut(s) 95, 451, 525, 740, 781, 1035, 1544, 1940, 1979
DpnI GATC 8 cut(s) 21, 330, 831, 1122, 1378, 1531, 1860, 2322
DpnII GATC 8 cut(s) 19, 328, 829, 1120, 1376, 1529, 1858, 2320
EaeI YGGCCR 2 cut(s) 1408, 1921
Eam1104I CTCTTC 2 cut(s) 1239, 2226
EarI CTCTTC 2 cut(s) 1239, 2226
EciI GGCGGA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 1445
Eco130I CCWWGG 1 cut(s) 577
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 1149, 1447
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 3 cut(s) 761, 1767, 1927
Eco47III AGCGCT 1 cut(s) 100
Eco53kI GAGCTC 1 cut(s) 1445
Eco57I CTGAAG 5 cut(s) 372, 1510, 1617, 1635, 1872
Eco81I CCTNAGG 2 cut(s) 451, 740
Eco88I CYCGRG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 1445
EcoNI CCTNNNNNAGG 2 cut(s) 973, 1943
EcoO109I RGGNCCY 3 cut(s) 1146, 1767, 1927
EcoRI GAATTC 2 cut(s) 930, 2053
EcoRII CCWGG 6 cut(s) 65, 873, 1055, 1084, 1204, 1923
EcoT14I CCWWGG 1 cut(s) 577
EcoT22I ATGCAT 1 cut(s) 1170
EcoT38I GRGCYC 2 cut(s) 1149, 1447
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 9 cut(s) 209, 702, 757, 975, 1142, 1865, 1919, 1988, 2374
FalI AAGNNNNNCTT 2 cut(s) 1552, 1584
FaqI GGGAC 2 cut(s) 623, 1913
FatI CATG 9 cut(s) 205, 698, 753, 971, 1138, 1861, 1915, 1984, 2370
FbaI TGATCA 2 cut(s) 19, 1858
Fnu4HI GCNGC 6 cut(s) 102, 183, 996, 1671, 1674, 2157
FokI GGATG 5 cut(s) 112, 166, 770, 859, 992
FriOI GRGCYC 2 cut(s) 1149, 1447
Fsp4HI GCNGC 6 cut(s) 102, 183, 996, 1671, 1674, 2157
FspBI CTAG 6 cut(s) 467, 578, 1196, 1329, 1751, 2249
GlaI GCGC 3 cut(s) 71, 100, 2032
GluI GCNGC 6 cut(s) 102, 183, 996, 1671, 1674, 2157
GsaI CCCAGC 2 cut(s) 195, 1715
GsuI CTGGAG 1 cut(s) 1461
HaeII RGCGCY 2 cut(s) 73, 102
HapII CCGG 3 cut(s) 584, 732, 1180
HgaI GACGC 1 cut(s) 715
HhaI GCGC 3 cut(s) 72, 101, 2033
Hin1II CATG 9 cut(s) 209, 702, 757, 975, 1142, 1865, 1919, 1988, 2374
Hin6I GCGC 3 cut(s) 70, 99, 2031
HinP1I GCGC 3 cut(s) 70, 99, 2031
HincII GTYRAC 4 cut(s) 505, 627, 1468, 2067
HindII GTYRAC 4 cut(s) 505, 627, 1468, 2067
HindIII AAGCTT 2 cut(s) 1839, 2124
HinfI GANTC 5 cut(s) 166, 870, 1288, 1457, 2381
HpaI GTTAAC 1 cut(s) 2067
HpaII CCGG 3 cut(s) 584, 732, 1180
HphI GGTGA 5 cut(s) 29, 169, 467, 1045, 1253
Hpy166II GTNNAC 6 cut(s) 383, 505, 627, 1468, 1652, 2067
Hpy188I TCNGA 8 cut(s) 772, 1007, 1075, 1529, 1552, 1573, 1592, 2332
Hpy8I GTNNAC 6 cut(s) 383, 505, 627, 1468, 1652, 2067
Hpy99I CGWCG 2 cut(s) 2094, 2394
HpyAV CCTTC 8 cut(s) 25, 396, 717, 1232, 1534, 1610, 1687, 2129
HpyCH4III ACNGT 5 cut(s) 17, 477, 502, 1354, 1465
HpyCH4IV ACGT 4 cut(s) 177, 674, 2069, 2389
HpyF10VI GCNNNNNNNGC 5 cut(s) 188, 538, 599, 1732, 1847
HpyF3I CTNAG 9 cut(s) 95, 451, 525, 740, 781, 1035, 1544, 1940, 1979
HpySE526I ACGT 4 cut(s) 177, 674, 2069, 2389
Hsp92II CATG 9 cut(s) 209, 702, 757, 975, 1142, 1865, 1919, 1988, 2374
HspAI GCGC 3 cut(s) 70, 99, 2031
Ksp22I TGATCA 2 cut(s) 19, 1858
KspAI GTTAAC 1 cut(s) 2067
Kzo9I GATC 8 cut(s) 19, 328, 829, 1120, 1376, 1529, 1858, 2320
LguI GCTCTTC 1 cut(s) 2226
LmnI GCTCC 5 cut(s) 235, 1321, 1442, 2020, 2319
Lsp1109I GCAGC 6 cut(s) 88, 169, 982, 1657, 1660, 2168
LweI GCATC 4 cut(s) 439, 982, 1657, 1987
MabI ACCWGGT 1 cut(s) 1055
MaeI CTAG 6 cut(s) 467, 578, 1196, 1329, 1751, 2249
MaeII ACGT 4 cut(s) 177, 674, 2069, 2389
MaeIII GTNAC 5 cut(s) 305, 555, 1348, 1562, 2378
MalI GATC 8 cut(s) 21, 330, 831, 1122, 1378, 1531, 1860, 2322
MboI GATC 8 cut(s) 19, 328, 829, 1120, 1376, 1529, 1858, 2320
MfeI CAATTG 1 cut(s) 2144
MflI RGATCY 3 cut(s) 829, 1376, 1529
MhlI GDGCHC 3 cut(s) 339, 1149, 1447
MlsI TGGCCA 1 cut(s) 1923
MluNI TGGCCA 1 cut(s) 1923
MlyI GAGTC 3 cut(s) 175, 879, 2375
MmeI TCCRAC 4 cut(s) 153, 266, 683, 788
Mox20I TGGCCA 1 cut(s) 1923
Mph1103I ATGCAT 1 cut(s) 1170
MroXI GAANNNNTTC 3 cut(s) 749, 899, 1046
MscI TGGCCA 1 cut(s) 1923
MseI TTAA 9 cut(s) 957, 1016, 1452, 1488, 1952, 2016, 2025, 2066, 2211
MslI CAYNNNNRTG 2 cut(s) 303, 1476
Msp20I TGGCCA 1 cut(s) 1923
MspI CCGG 3 cut(s) 584, 732, 1180
MspR9I CCNGG 9 cut(s) 67, 584, 732, 875, 1057, 1086, 1181, 1206, 1925
MunI CAATTG 1 cut(s) 2144
MvaI CCWGG 6 cut(s) 67, 875, 1057, 1086, 1206, 1925
MwoI GCNNNNNNNGC 5 cut(s) 188, 538, 599, 1732, 1847
NciI CCSGG 3 cut(s) 584, 732, 1181
NdeII GATC 8 cut(s) 19, 328, 829, 1120, 1376, 1529, 1858, 2320
NheI GCTAGC 1 cut(s) 466
NlaIII CATG 9 cut(s) 209, 702, 757, 975, 1142, 1865, 1919, 1988, 2374
NlaIV GGNNCC 7 cut(s) 211, 531, 778, 1147, 1378, 1769, 1929
NmeAIII GCCGAG 1 cut(s) 628
NmuCI GTSAC 4 cut(s) 305, 1348, 1562, 2378
NsiI ATGCAT 1 cut(s) 1170
NspV TTCGAA 2 cut(s) 273, 1680
PagI TCATGA 1 cut(s) 1915
PceI AGGCCT 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 2226
PdmI GAANNNNTTC 3 cut(s) 749, 899, 1046
PfeI GAWTC 2 cut(s) 1288, 1457
PflFI GACNNNGTC 1 cut(s) 635
PflMI CCANNNNNTGG 1 cut(s) 515
PfoI TCCNGGA 1 cut(s) 1179
PkrI GCNGC 6 cut(s) 103, 184, 997, 1672, 1675, 2158
Ple19I CGATCG 1 cut(s) 2323
PleI GAGTC 3 cut(s) 174, 878, 2375
PpsI GAGTC 3 cut(s) 174, 878, 2375
PpuMI RGGWCCY 2 cut(s) 1767, 1927
Psp124BI GAGCTC 1 cut(s) 1447
Psp1406I AACGTT 2 cut(s) 674, 2069
Psp5II RGGWCCY 2 cut(s) 1767, 1927
Psp6I CCWGG 6 cut(s) 65, 873, 1055, 1084, 1204, 1923
PspFI CCCAGC 2 cut(s) 191, 1711
PspGI CCWGG 6 cut(s) 65, 873, 1055, 1084, 1204, 1923
PspN4I GGNNCC 7 cut(s) 211, 531, 778, 1147, 1378, 1769, 1929
PspOMI GGGCCC 1 cut(s) 1145
PspPPI RGGWCCY 2 cut(s) 1767, 1927
PstNI CAGNNNCTG 1 cut(s) 1358
PsuI RGATCY 3 cut(s) 829, 1376, 1529
PsyI GACNNNGTC 1 cut(s) 635
PvuI CGATCG 1 cut(s) 2323
RsaI GTAC 4 cut(s) 384, 479, 984, 2208
RsaNI GTAC 4 cut(s) 383, 478, 983, 2207
RseI CAYNNNNRTG 2 cut(s) 303, 1476
SacI GAGCTC 1 cut(s) 1447
SapI GCTCTTC 1 cut(s) 2226
SaqAI TTAA 9 cut(s) 957, 1016, 1452, 1488, 1952, 2016, 2025, 2066, 2211
SatI GCNGC 6 cut(s) 102, 183, 996, 1671, 1674, 2157
Sau3AI GATC 8 cut(s) 19, 328, 829, 1120, 1376, 1529, 1858, 2320
SchI GAGTC 3 cut(s) 175, 879, 2375
ScrFI CCNGG 9 cut(s) 67, 584, 732, 875, 1057, 1086, 1181, 1206, 1925
SduI GDGCHC 3 cut(s) 339, 1149, 1447
SexAI ACCWGGT 1 cut(s) 1055
SfaNI GCATC 4 cut(s) 439, 982, 1657, 1987
SfcI CTRYAG 1 cut(s) 364
SfuI TTCGAA 2 cut(s) 273, 1680
SinI GGWCC 3 cut(s) 761, 1767, 1927
SmiMI CAYNNNNRTG 2 cut(s) 303, 1476
SmlI CTYRAG 2 cut(s) 1344, 1774
SmoI CTYRAG 2 cut(s) 1344, 1774
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 4 cut(s) 63, 213, 998, 2171
SspI AATATT 2 cut(s) 1807, 2260
SspMI CTAG 6 cut(s) 467, 578, 1196, 1329, 1751, 2249
SstI GAGCTC 1 cut(s) 1447
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 9 cut(s) 65, 582, 730, 873, 1055, 1084, 1179, 1204, 1923
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 5 cut(s) 17, 477, 502, 1354, 1465
TaiI ACGT 4 cut(s) 180, 677, 2072, 2392
TatI WGTACW 2 cut(s) 477, 982
TfiI GAWTC 2 cut(s) 1288, 1457
Tru1I TTAA 9 cut(s) 957, 1016, 1452, 1488, 1952, 2016, 2025, 2066, 2211
Tru9I TTAA 9 cut(s) 957, 1016, 1452, 1488, 1952, 2016, 2025, 2066, 2211
TscAI CASTG 5 cut(s) 29, 232, 480, 505, 1468
TseFI GTSAC 4 cut(s) 305, 1348, 1562, 2378
TseI GCWGC 6 cut(s) 101, 182, 995, 1670, 1673, 2156
Tsp45I GTSAC 4 cut(s) 305, 1348, 1562, 2378
TspGWI ACGGA 3 cut(s) 222, 1164, 1861
TspRI CASTG 5 cut(s) 29, 232, 480, 505, 1468
Tth111I GACNNNGTC 1 cut(s) 635
Van91I CCANNNNNTGG 1 cut(s) 515
VpaK11BI GGWCC 3 cut(s) 761, 1767, 1927
XagI CCTNNNNNAGG 2 cut(s) 973, 1943
XapI RAATTY 6 cut(s) 881, 930, 1018, 2053, 2178, 2273
XbaI TCTAGA 1 cut(s) 1195
XmaJI CCTAGG 1 cut(s) 577
XmnI GAANNNNTTC 3 cut(s) 749, 899, 1046
XspI CTAG 6 cut(s) 467, 578, 1196, 1329, 1751, 2249
Zsp2I ATGCAT 1 cut(s) 1170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.