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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcoI | YGGCCR | 4 cut(s) | 8, 132, 193, 292 |
| AcsI | RAATTY | 2 cut(s) | 270, 307 |
| AcuI | CTGAAG | 1 cut(s) | 519 |
| AfaI | GTAC | 3 cut(s) | 100, 409, 556 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 445, 464, 491, 559 |
| AgeI | ACCGGT | 1 cut(s) | 341 |
| AgsI | TTSAA | 2 cut(s) | 155, 269 |
| AhlI | ACTAGT | 1 cut(s) | 424 |
| AjnI | CCWGG | 2 cut(s) | 324, 417 |
| AluBI | AGCT | 2 cut(s) | 228, 515 |
| AluI | AGCT | 2 cut(s) | 228, 515 |
| Alw21I | GWGCWC | 2 cut(s) | 230, 349 |
| Alw44I | GTGCAC | 1 cut(s) | 345 |
| AoxI | GGCC | 4 cut(s) | 8, 132, 193, 292 |
| ApaLI | GTGCAC | 1 cut(s) | 345 |
| ApoI | RAATTY | 2 cut(s) | 270, 307 |
| AsiGI | ACCGGT | 1 cut(s) | 341 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 426 |
| AspLEI | GCGC | 1 cut(s) | 527 |
| AspS9I | GGNCC | 1 cut(s) | 550 |
| AsuHPI | GGTGA | 2 cut(s) | 116, 574 |
| AvaII | GGWCC | 1 cut(s) | 550 |
| BaeGI | GKGCMC | 1 cut(s) | 349 |
| BalI | TGGCCA | 1 cut(s) | 10 |
| BanII | GRGCYC | 1 cut(s) | 230 |
| Bbv12I | GWGCWC | 2 cut(s) | 230, 349 |
| BbvCI | CCTCAGC | 1 cut(s) | 333 |
| BccI | CCATC | 2 cut(s) | 185, 538 |
| BceAI | ACGGC | 1 cut(s) | 180 |
| BciT130I | CCWGG | 2 cut(s) | 326, 419 |
| BciVI | GTATCC | 1 cut(s) | 331 |
| BclI | TGATCA | 1 cut(s) | 202 |
| BcuI | ACTAGT | 1 cut(s) | 424 |
| BfaI | CTAG | 1 cut(s) | 425 |
| BfmI | CTRYAG | 1 cut(s) | 118 |
| BfuI | GTATCC | 1 cut(s) | 331 |
| BmcAI | AGTACT | 1 cut(s) | 409 |
| Bme1390I | CCNGG | 2 cut(s) | 326, 419 |
| Bme18I | GGWCC | 1 cut(s) | 550 |
| BmgT120I | GGNCC | 1 cut(s) | 550 |
| BmrFI | CCNGG | 2 cut(s) | 326, 419 |
| BmsI | GCATC | 2 cut(s) | 297, 319 |
| Bpu10I | CCTNAGC | 1 cut(s) | 333 |
| BsaJI | CCNNGG | 4 cut(s) | 165, 231, 324, 417 |
| BsaWI | WCCGGW | 1 cut(s) | 341 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 466, 496 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 445, 464, 491, 559 |
| Bse118I | RCCGGY | 1 cut(s) | 341 |
| Bse1I | ACTGG | 1 cut(s) | 106 |
| BseBI | CCWGG | 2 cut(s) | 326, 419 |
| BseDI | CCNNGG | 4 cut(s) | 165, 231, 324, 417 |
| BseGI | GGATG | 5 cut(s) | 94, 256, 311, 334, 451 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 445, 464, 491, 559 |
| BseMII | CTCAG | 2 cut(s) | 213, 324 |
| BseNI | ACTGG | 1 cut(s) | 106 |
| BseRI | GAGGAG | 2 cut(s) | 207, 471 |
| BseSI | GKGCMC | 1 cut(s) | 349 |
| Bsh1285I | CGRYCG | 1 cut(s) | 60 |
| BshFI | GGCC | 4 cut(s) | 10, 134, 195, 294 |
| BshTI | ACCGGT | 1 cut(s) | 341 |
| BsiEI | CGRYCG | 1 cut(s) | 60 |
| BsiHKAI | GWGCWC | 2 cut(s) | 230, 349 |
| BsiSI | CCGG | 1 cut(s) | 342 |
| BsiWI | CGTACG | 1 cut(s) | 554 |
| BslFI | GGGAC | 1 cut(s) | 484 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 445, 464, 491, 559 |
| BsmFI | GGGAC | 1 cut(s) | 484 |
| BsmI | GAATGC | 1 cut(s) | 55 |
| BsnI | GGCC | 4 cut(s) | 10, 134, 195, 294 |
| Bsp1286I | GDGCHC | 2 cut(s) | 230, 349 |
| Bsp143I | GATC | 2 cut(s) | 202, 564 |
| Bsp19I | CCATGG | 1 cut(s) | 231 |
| BspANI | GGCC | 4 cut(s) | 10, 134, 195, 294 |
| BspCNI | CTCAG | 2 cut(s) | 214, 325 |
| BsrFI | RCCGGY | 1 cut(s) | 341 |
| BsrI | ACTGG | 1 cut(s) | 106 |
| BssAI | RCCGGY | 1 cut(s) | 341 |
| BssECI | CCNNGG | 4 cut(s) | 165, 231, 324, 417 |
| BssMI | GATC | 2 cut(s) | 202, 564 |
| BssT1I | CCWWGG | 2 cut(s) | 165, 231 |
| Bst2UI | CCWGG | 2 cut(s) | 326, 419 |
| Bst4CI | ACNGT | 2 cut(s) | 506, 554 |
| BstC8I | GCNNGC | 1 cut(s) | 513 |
| BstDEI | CTNAG | 3 cut(s) | 222, 333, 350 |
| BstDSI | CCRYGG | 1 cut(s) | 231 |
| BstF5I | GGATG | 5 cut(s) | 94, 256, 311, 334, 451 |
| BstHHI | GCGC | 1 cut(s) | 527 |
| BstKTI | GATC | 2 cut(s) | 205, 567 |
| BstMBI | GATC | 2 cut(s) | 202, 564 |
| BstMCI | CGRYCG | 1 cut(s) | 60 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 329 |
| BstNI | CCWGG | 2 cut(s) | 326, 419 |
| BstSCI | CCNGG | 2 cut(s) | 324, 417 |
| BstSFI | CTRYAG | 1 cut(s) | 118 |
| BstSLI | GKGCMC | 1 cut(s) | 349 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 547 |
| BsuI | GTATCC | 1 cut(s) | 331 |
| BsuRI | GGCC | 4 cut(s) | 10, 134, 195, 294 |
| BtgI | CCRYGG | 1 cut(s) | 231 |
| BtsCI | GGATG | 5 cut(s) | 94, 256, 311, 334, 451 |
| BtsIMutI | CAGTG | 1 cut(s) | 511 |
| Cac8I | GCNNGC | 1 cut(s) | 513 |
| CfoI | GCGC | 1 cut(s) | 527 |
| Cfr10I | RCCGGY | 1 cut(s) | 341 |
| Cfr13I | GGNCC | 1 cut(s) | 550 |
| Csp6I | GTAC | 3 cut(s) | 99, 408, 555 |
| CspAI | ACCGGT | 1 cut(s) | 341 |
| CviAII | CATG | 3 cut(s) | 124, 232, 247 |
| CviQI | GTAC | 3 cut(s) | 99, 408, 555 |
| DdeI | CTNAG | 3 cut(s) | 222, 333, 350 |
| DpnI | GATC | 2 cut(s) | 204, 566 |
| DpnII | GATC | 2 cut(s) | 202, 564 |
| EaeI | YGGCCR | 4 cut(s) | 8, 132, 193, 292 |
| Ecl136II | GAGCTC | 1 cut(s) | 228 |
| Eco130I | CCWWGG | 2 cut(s) | 165, 231 |
| Eco24I | GRGCYC | 1 cut(s) | 230 |
| Eco47I | GGWCC | 1 cut(s) | 550 |
| Eco53kI | GAGCTC | 1 cut(s) | 228 |
| Eco57I | CTGAAG | 1 cut(s) | 519 |
| EcoICRI | GAGCTC | 1 cut(s) | 228 |
| EcoRII | CCWGG | 2 cut(s) | 324, 417 |
| EcoT14I | CCWWGG | 2 cut(s) | 165, 231 |
| EcoT38I | GRGCYC | 1 cut(s) | 230 |
| ErhI | CCWWGG | 2 cut(s) | 165, 231 |
| FaeI | CATG | 3 cut(s) | 127, 235, 250 |
| FaiI | YATR | 8 cut(s) | 35, 120, 125, 183, 233, 248, 461, 470 |
| FaqI | GGGAC | 1 cut(s) | 484 |
| FatI | CATG | 3 cut(s) | 123, 231, 246 |
| FbaI | TGATCA | 1 cut(s) | 202 |
| FokI | GGATG | 5 cut(s) | 101, 263, 298, 341, 438 |
| FriOI | GRGCYC | 1 cut(s) | 230 |
| FspBI | CTAG | 1 cut(s) | 425 |
| GlaI | GCGC | 1 cut(s) | 526 |
| HaeIII | GGCC | 4 cut(s) | 10, 134, 195, 294 |
| HapII | CCGG | 1 cut(s) | 342 |
| HhaI | GCGC | 1 cut(s) | 527 |
| Hin1II | CATG | 3 cut(s) | 127, 235, 250 |
| Hin6I | GCGC | 1 cut(s) | 525 |
| HinP1I | GCGC | 1 cut(s) | 525 |
| HinfI | GANTC | 1 cut(s) | 265 |
| HpaII | CCGG | 1 cut(s) | 342 |
| HphI | GGTGA | 2 cut(s) | 116, 574 |
| Hpy166II | GTNNAC | 2 cut(s) | 347, 550 |
| Hpy188I | TCNGA | 1 cut(s) | 79 |
| Hpy188III | TCNNGA | 1 cut(s) | 221 |
| Hpy8I | GTNNAC | 2 cut(s) | 347, 550 |
| HpyAV | CCTTC | 1 cut(s) | 485 |
| HpyCH4III | ACNGT | 2 cut(s) | 506, 554 |
| HpyCH4V | TGCA | 2 cut(s) | 305, 347 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 329 |
| HpyF3I | CTNAG | 3 cut(s) | 222, 333, 350 |
| Hsp92II | CATG | 3 cut(s) | 127, 235, 250 |
| HspAI | GCGC | 1 cut(s) | 525 |
| Ksp22I | TGATCA | 1 cut(s) | 202 |
| Kzo9I | GATC | 2 cut(s) | 202, 564 |
| LmnI | GCTCC | 2 cut(s) | 233, 532 |
| LweI | GCATC | 2 cut(s) | 297, 319 |
| MaeI | CTAG | 1 cut(s) | 425 |
| MalI | GATC | 2 cut(s) | 204, 566 |
| MboI | GATC | 2 cut(s) | 202, 564 |
| MboII | GAAGA | 3 cut(s) | 167, 422, 525 |
| MhlI | GDGCHC | 2 cut(s) | 230, 349 |
| MlsI | TGGCCA | 1 cut(s) | 10 |
| MluCI | AATT | 2 cut(s) | 270, 307 |
| MluNI | TGGCCA | 1 cut(s) | 10 |
| MmeI | TCCRAC | 2 cut(s) | 339, 509 |
| MnlI | CCTC | 9 cut(s) | 19, 79, 225, 228, 328, 383, 439, 465, 492 |
| Mox20I | TGGCCA | 1 cut(s) | 10 |
| MroXI | GAANNNNTTC | 1 cut(s) | 426 |
| MscI | TGGCCA | 1 cut(s) | 10 |
| Msp20I | TGGCCA | 1 cut(s) | 10 |
| MspI | CCGG | 1 cut(s) | 342 |
| MspR9I | CCNGG | 2 cut(s) | 326, 419 |
| Mva1269I | GAATGC | 1 cut(s) | 55 |
| MvaI | CCWGG | 2 cut(s) | 326, 419 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 329 |
| NcoI | CCATGG | 1 cut(s) | 231 |
| NdeII | GATC | 2 cut(s) | 202, 564 |
| NlaIII | CATG | 3 cut(s) | 127, 235, 250 |
| NmeAIII | GCCGAG | 1 cut(s) | 380 |
| PctI | GAATGC | 1 cut(s) | 55 |
| PdmI | GAANNNNTTC | 1 cut(s) | 426 |
| PfeI | GAWTC | 1 cut(s) | 265 |
| Pfl23II | CGTACG | 1 cut(s) | 554 |
| PinAI | ACCGGT | 1 cut(s) | 341 |
| Psp124BI | GAGCTC | 1 cut(s) | 230 |
| Psp6I | CCWGG | 2 cut(s) | 324, 417 |
| PspGI | CCWGG | 2 cut(s) | 324, 417 |
| PspLI | CGTACG | 1 cut(s) | 554 |
| PspPI | GGNCC | 1 cut(s) | 550 |
| RsaI | GTAC | 3 cut(s) | 100, 409, 556 |
| RsaNI | GTAC | 3 cut(s) | 99, 408, 555 |
| SacI | GAGCTC | 1 cut(s) | 230 |
| Sau3AI | GATC | 2 cut(s) | 202, 564 |
| Sau96I | GGNCC | 1 cut(s) | 550 |
| ScaI | AGTACT | 1 cut(s) | 409 |
| ScrFI | CCNGG | 2 cut(s) | 326, 419 |
| SduI | GDGCHC | 2 cut(s) | 230, 349 |
| SetI | ASST | 4 cut(s) | 230, 303, 375, 517 |
| SfaNI | GCATC | 2 cut(s) | 297, 319 |
| SfcI | CTRYAG | 1 cut(s) | 118 |
| SinI | GGWCC | 1 cut(s) | 550 |
| SpeI | ACTAGT | 1 cut(s) | 424 |
| Sse9I | AATT | 2 cut(s) | 270, 307 |
| SspMI | CTAG | 1 cut(s) | 425 |
| SstI | GAGCTC | 1 cut(s) | 230 |
| StyD4I | CCNGG | 2 cut(s) | 324, 417 |
| StyI | CCWWGG | 2 cut(s) | 165, 231 |
| TaaI | ACNGT | 2 cut(s) | 506, 554 |
| TaqI | TCGA | 2 cut(s) | 56, 403 |
| TaqII | GACCGA | 1 cut(s) | 74 |
| TasI | AATT | 2 cut(s) | 270, 307 |
| TatI | WGTACW | 1 cut(s) | 407 |
| TfiI | GAWTC | 1 cut(s) | 265 |
| TscAI | CASTG | 1 cut(s) | 511 |
| TspDTI | ATGAA | 1 cut(s) | 300 |
| TspRI | CASTG | 1 cut(s) | 511 |
| VneI | GTGCAC | 1 cut(s) | 345 |
| VpaK11BI | GGWCC | 1 cut(s) | 550 |
| XapI | RAATTY | 2 cut(s) | 270, 307 |
| XmnI | GAANNNNTTC | 1 cut(s) | 426 |
| XspI | CTAG | 1 cut(s) | 425 |
| ZrmI | AGTACT | 1 cut(s) | 409 |