Rmu_ssc0000311.1_g000010

Glutamate receptor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000311.1
OG0000063
Physical Location & Seq
Reverse (-)
48034 .. 50898
2865 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000311.1_g000010.1.cds

Sequence Viewer

Length: 2112 bp
atggctgatgaaacatcagaaaccgaaacggggctagaggacagcgaagcaacaaaagcacaattggctaaattctcaaacaagtttgaagctgcctttaatgcttctgtggacaaacttcaaagctctgtgatatgtcggttggcgaagaacaaggaaccgcgaagagagtgcatattaggaccccattacagcttgggtatgccgcctgccatcaacgaggttctagaaaactcgttggtggacacatcttgcttgaccggcggagctagctggtctagttggaacacaaattctaaacagccagggagttggtcgaaatcgacacccgagtggaagaaatgggtgccacggatggagtactttttcggccgctcatggaaaaaatttggtatttatgatagcatcaaattgtctgagcaagaaatctacatggaccggcctcttcttgtcgctgccttgtgtctttggtcatctgctactaacaccatgaacctgccacttgggccaatgagtccaaccttgctagatatggccgcaatatttggttttcggccgaatggagaggagatatgtgccttagctgacattccttcctcttgtcatactagcctgaaacccaaagtgaacaaggacgacaagaaagccaaacaaaaagctgatgccaatgcgaggaagttgcttaactataacactttctacgtcgaacatgcaattgccgaggatgtgtccacggttgagaggcacgaaccaacgcaacatgagcacgccgctttcctcctctattggttatgcaaatacgtgttttgcacgaagtcaaacaagtgcttgttagagtttgctggtattgcggaggcccttagcttgggtaaacctttagcccttggtctgtttgtccttgcctatctttaccgtactttgcgtaatggtacactggatcagccaggggttgaggtttattttccaaactttgttgcgcgtcagcttggcttcatacaaagttgtccagccttctttctaatgtcccggaatcgtttttcttcatggagaggtgggtttacagacactgcgcattgttcggccgtcactctttattatcagattcagtttggcaattttgagagatccggcctgagcgcccgtgaacctgatcatagagcaactccgactttccaagcttggtggtcaacaattatcaagaagaaacttggagaggacttgcggacaaccgagcgtattgccttgtatggattcccgggcttgttcaccaacaaggagcaaacctcaaagaaacgaggatcaaagtcgggaagagctctgcctaccaagaaggtaaagaagtcacctgacgtggtggagagttcggtcacaaatccggctgaccttatggttagtgaagacataattttcgagggtgatatggataatagccaaaatgctctagctgaaaataacatcatgtctggagctgaggatgcggccgaaactagtgatgcctcaaacaacaacatgggctcggccggcagtgaaggttcacctgatgaagcacagtcagaaaactttgagcatgagaacttgggtgagaaccagcttcctaatatcgacaaaccactcgcaaactcagctaaccttgctaaggatgcggaagacatcggtgtacgaggaactcaaagcagttcaaccttggagttggttcttctcaatctaactgaaccaaatccttcgatgtccggaatgcttacctcccctcttactgaagggatgcctcgaaatgatcaagctatcgtttgcaccccatcgtcggctgagcctgtggatcaaacaataggcgatcttggtctggagttacttcaatttctcgatacgctagacaacaacgagagctcggtggaggaaaaacttgaaacaaccgaaacaaagaaggcacttgaatcggtcagacaatttttgggttgtgatacgagagcagtaaccgaggctagttttcttgcttttaaggaggcggttgaagtacttatttcagccaaccatttatctaaagtagaagcttatgaagttcatgcccttttgtcccgtgcaaattttagtctctctccctgcttagaagcctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

703

Amino Acids

77.55

Weight (kDa)

5.14

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1071
Acc36I ACCTGC 1 cut(s) 504
AccB1I GGYRCC 1 cut(s) 346
AccBSI CCGCTC 1 cut(s) 375
AccII CGCG 2 cut(s) 163, 979
AccIII TCCGGA 1 cut(s) 1730
AclWI GGATC 4 cut(s) 945, 1119, 1306, 1824
AcoI YGGCCR 6 cut(s) 370, 534, 554, 1080, 1479, 1518
AcsI RAATTY 4 cut(s) 71, 292, 386, 2080
AcuI CTGAAG 1 cut(s) 1776
AfaI GTAC 5 cut(s) 362, 916, 931, 1659, 2013
AfiI CCNNNNNNNGG 5 cut(s) 30, 672, 865, 1636, 1801
AflIII ACRYGT 1 cut(s) 801
AgsI TTSAA 7 cut(s) 89, 122, 1680, 1853, 1904, 1931, 2009
AhlI ACTAGT 1 cut(s) 1487
AjiI CACGTC 1 cut(s) 1351
AjnI CCWGG 2 cut(s) 304, 943
AleI CACNNNNGTG 1 cut(s) 331
Alw21I GWGCWC 3 cut(s) 768, 1318, 1886
Alw26I GTCTC 1 cut(s) 2093
AlwI GGATC 4 cut(s) 945, 1119, 1306, 1824
AlwNI CAGNNNCTG 1 cut(s) 1067
Ama87I CYCGRG 2 cut(s) 329, 1255
Aor13HI TCCGGA 1 cut(s) 1730
ApeKI GCWGC 2 cut(s) 92, 455
ApoI RAATTY 4 cut(s) 71, 292, 386, 2080
ArsI GACNNNNNNTTYG 2 cut(s) 1391, 1423
AspLEI GCGC 3 cut(s) 979, 1072, 1139
AspS9I GGNCC 4 cut(s) 182, 436, 506, 856
AsuC2I CCSGG 3 cut(s) 1027, 1256, 1257
AsuHPI GGTGA 5 cut(s) 1258, 1335, 1427, 1527, 1592
AsuNHI GCTAGC 1 cut(s) 269
AvaI CYCGRG 2 cut(s) 329, 1255
AvaII GGWCC 2 cut(s) 182, 436
BanI GGYRCC 1 cut(s) 346
BanII GRGCYC 3 cut(s) 1318, 1517, 1886
BbsI GAAGAC 2 cut(s) 1404, 1653
Bbv12I GWGCWC 3 cut(s) 768, 1318, 1886
BbvCI CCTCAGC 1 cut(s) 1470
BbvI GCAGC 2 cut(s) 79, 442
BccI CCATC 3 cut(s) 221, 349, 1804
BceAI ACGGC 1 cut(s) 1067
BcgI CGANNNNNNTGC 8 cut(s) 153, 187, 661, 695, 1220, 1254, 1914, 1948
BciT130I CCWGG 2 cut(s) 306, 945
BclI TGATCA 2 cut(s) 1150, 1774
BcnI CCSGG 3 cut(s) 1027, 1256, 1257
BcoDI GTCTC 1 cut(s) 2093
BcuI ACTAGT 1 cut(s) 1487
BfoI RGCGCY 1 cut(s) 1140
BfuAI ACCTGC 1 cut(s) 504
BglI GCCNNNNNGGC 1 cut(s) 505
BisI GCNGC 7 cut(s) 93, 206, 373, 456, 537, 771, 1479
BlpI GCTNAGC 1 cut(s) 1806
BlsI GCNGC 7 cut(s) 94, 207, 374, 457, 538, 772, 1480
BmcAI AGTACT 2 cut(s) 362, 2013
Bme1390I CCNGG 5 cut(s) 306, 945, 1027, 1256, 1257
Bme18I GGWCC 2 cut(s) 182, 436
BmeT110I CYCGRG 2 cut(s) 329, 1255
BmgBI CACGTC 1 cut(s) 1351
BmgT120I GGNCC 4 cut(s) 182, 436, 506, 856
BmiI GGNNCC 3 cut(s) 159, 184, 348
BmrFI CCNGG 5 cut(s) 306, 945, 1027, 1256, 1257
BmsI GCATC 6 cut(s) 414, 652, 1465, 1483, 1630, 1752
BmtI GCTAGC 1 cut(s) 273
BpiI GAAGAC 2 cut(s) 1404, 1653
BplI GAGNNNNNCTC 2 cut(s) 1268, 1300
BpmI CTGGAG 2 cut(s) 1485, 1862
Bpu10I CCTNAGC 5 cut(s) 580, 860, 1133, 1470, 1635
Bpu1102I GCTNAGC 1 cut(s) 1806
BpuMI CCSGG 3 cut(s) 1027, 1256, 1257
BsaAI YACGTR 1 cut(s) 802
BsaJI CCNNGG 9 cut(s) 305, 350, 720, 732, 883, 944, 1255, 1683, 1974
BsaWI WCCGGW 1 cut(s) 1730
Bsc4I CCNNNNNNNGG 5 cut(s) 30, 672, 865, 1636, 1801
Bse118I RCCGGY 3 cut(s) 260, 438, 1520
Bse1I ACTGG 1 cut(s) 939
BseAI TCCGGA 1 cut(s) 1730
BseBI CCWGG 2 cut(s) 306, 945
BseDI CCNNGG 9 cut(s) 305, 350, 720, 732, 883, 944, 1255, 1683, 1974
BseGI GGATG 5 cut(s) 360, 730, 1480, 1645, 1767
BseLI CCNNNNNNNGG 5 cut(s) 30, 672, 865, 1636, 1801
BseMII CTCAG 5 cut(s) 408, 1124, 1461, 1635, 1797
BseNI ACTGG 1 cut(s) 939
BseRI GAGGAG 2 cut(s) 581, 770
BseX3I CGGCCG 5 cut(s) 370, 554, 1080, 1479, 1518
BseXI GCAGC 2 cut(s) 79, 442
Bsh1236I CGCG 2 cut(s) 163, 979
Bsh1285I CGRYCG 5 cut(s) 373, 557, 1083, 1482, 1521
BshNI GGYRCC 1 cut(s) 346
BsiEI CGRYCG 5 cut(s) 373, 557, 1083, 1482, 1521
BsiHKAI GWGCWC 3 cut(s) 768, 1318, 1886
BsiHKCI CYCGRG 2 cut(s) 329, 1255
BsiSI CCGG 8 cut(s) 261, 439, 1027, 1128, 1256, 1376, 1521, 1731
BslFI GGGAC 2 cut(s) 1009, 2056
BslI CCNNNNNNNGG 5 cut(s) 30, 672, 865, 1636, 1801
BsmAI GTCTC 1 cut(s) 2093
BsmFI GGGAC 2 cut(s) 1009, 2056
BsmI GAATGC 1 cut(s) 1740
BsoBI CYCGRG 2 cut(s) 329, 1255
Bsp1286I GDGCHC 4 cut(s) 768, 1318, 1517, 1886
Bsp13I TCCGGA 1 cut(s) 1730
Bsp143I GATC 7 cut(s) 937, 1124, 1150, 1298, 1774, 1816, 1831
Bsp1720I GCTNAGC 1 cut(s) 1806
BspCNI CTCAG 5 cut(s) 409, 1125, 1462, 1634, 1798
BspEI TCCGGA 1 cut(s) 1730
BspFNI CGCG 2 cut(s) 163, 979
BspLI GGNNCC 3 cut(s) 159, 184, 348
BspMI ACCTGC 1 cut(s) 504
BspOI GCTAGC 1 cut(s) 273
BspPI GGATC 4 cut(s) 945, 1119, 1306, 1824
BspQI GCTCTTC 1 cut(s) 1306
BspT107I GGYRCC 1 cut(s) 346
BsrBI CCGCTC 1 cut(s) 375
BsrFI RCCGGY 3 cut(s) 260, 438, 1520
BsrI ACTGG 1 cut(s) 939
BssAI RCCGGY 3 cut(s) 260, 438, 1520
BssECI CCNNGG 9 cut(s) 305, 350, 720, 732, 883, 944, 1255, 1683, 1974
BssMI GATC 7 cut(s) 937, 1124, 1150, 1298, 1774, 1816, 1831
BssT1I CCWWGG 2 cut(s) 883, 1683
Bst2UI CCWGG 2 cut(s) 306, 945
Bst4CI ACNGT 3 cut(s) 736, 914, 1551
Bst6I CTCTTC 3 cut(s) 160, 450, 1306
BstBAI YACGTR 1 cut(s) 802
BstC8I GCNNGC 4 cut(s) 210, 271, 768, 1522
BstDEI CTNAG 9 cut(s) 417, 580, 860, 1133, 1470, 1621, 1635, 1806, 2101
BstDSI CCRYGG 2 cut(s) 350, 732
BstENI CCTNNNNNAGG 1 cut(s) 1634
BstF5I GGATG 5 cut(s) 360, 730, 1480, 1645, 1767
BstFNI CGCG 2 cut(s) 163, 979
BstH2I RGCGCY 1 cut(s) 1140
BstHHI GCGC 3 cut(s) 979, 1072, 1139
BstKTI GATC 7 cut(s) 940, 1127, 1153, 1301, 1777, 1819, 1834
BstMAI GTCTC 1 cut(s) 2093
BstMBI GATC 7 cut(s) 937, 1124, 1150, 1298, 1774, 1816, 1831
BstMCI CGRYCG 5 cut(s) 373, 557, 1083, 1482, 1521
BstNI CCWGG 2 cut(s) 306, 945
BstNSI RCATGY 1 cut(s) 713
BstSCI CCNGG 5 cut(s) 304, 943, 1025, 1254, 1255
BstUI CGCG 2 cut(s) 163, 979
BstV1I GCAGC 2 cut(s) 79, 442
BstV2I GAAGAC 2 cut(s) 1404, 1653
BstX2I RGATCY 1 cut(s) 1124
BstXI CCANNNNNNTGG 1 cut(s) 312
BstYI RGATCY 1 cut(s) 1124
BstZI CGGCCG 5 cut(s) 370, 554, 1080, 1479, 1518
BtgI CCRYGG 2 cut(s) 350, 732
BtrI CACGTC 1 cut(s) 1351
BtsCI GGATG 5 cut(s) 360, 730, 1480, 1645, 1767
BtsI GCAGTG 2 cut(s) 1065, 1531
BtsIMutI CAGTG 3 cut(s) 932, 1065, 1531
BveI ACCTGC 1 cut(s) 504
Cac8I GCNNGC 4 cut(s) 210, 271, 768, 1522
CaiI CAGNNNCTG 1 cut(s) 1067
CfoI GCGC 3 cut(s) 979, 1072, 1139
Cfr10I RCCGGY 3 cut(s) 260, 438, 1520
Cfr13I GGNCC 4 cut(s) 182, 436, 506, 856
Cfr9I CCCGGG 1 cut(s) 1255
CseI GACGC 1 cut(s) 968
Csp6I GTAC 5 cut(s) 361, 915, 930, 1658, 2012
CspCI CAANNNNNGTGG 2 cut(s) 1163, 1198
CviQI GTAC 5 cut(s) 361, 915, 930, 1658, 2012
DdeI CTNAG 9 cut(s) 417, 580, 860, 1133, 1470, 1621, 1635, 1806, 2101
DpnI GATC 7 cut(s) 939, 1126, 1152, 1300, 1776, 1818, 1833
DpnII GATC 7 cut(s) 937, 1124, 1150, 1298, 1774, 1816, 1831
EaeI YGGCCR 6 cut(s) 370, 534, 554, 1080, 1479, 1518
EagI CGGCCG 5 cut(s) 370, 554, 1080, 1479, 1518
Eam1104I CTCTTC 3 cut(s) 160, 450, 1306
EarI CTCTTC 3 cut(s) 160, 450, 1306
EciI GGCGGA 1 cut(s) 279
Ecl136II GAGCTC 2 cut(s) 1316, 1884
EclXI CGGCCG 5 cut(s) 370, 554, 1080, 1479, 1518
Eco130I CCWWGG 2 cut(s) 883, 1683
Eco24I GRGCYC 3 cut(s) 1318, 1517, 1886
Eco47I GGWCC 2 cut(s) 182, 436
Eco52I CGGCCG 5 cut(s) 370, 554, 1080, 1479, 1518
Eco53kI GAGCTC 2 cut(s) 1316, 1884
Eco57I CTGAAG 1 cut(s) 1776
Eco88I CYCGRG 2 cut(s) 329, 1255
EcoICRI GAGCTC 2 cut(s) 1316, 1884
EcoNI CCTNNNNNAGG 1 cut(s) 1634
EcoO109I RGGNCCY 2 cut(s) 182, 856
EcoRII CCWGG 2 cut(s) 304, 943
EcoT14I CCWWGG 2 cut(s) 883, 1683
EcoT38I GRGCYC 3 cut(s) 1318, 1517, 1886
ErhI CCWWGG 2 cut(s) 883, 1683
FaqI GGGAC 2 cut(s) 1009, 2056
FbaI TGATCA 2 cut(s) 1150, 1774
Fnu4HI GCNGC 7 cut(s) 93, 206, 373, 456, 537, 771, 1479
FokI GGATG 5 cut(s) 367, 737, 1487, 1652, 1774
FriOI GRGCYC 3 cut(s) 1318, 1517, 1886
Fsp4HI GCNGC 7 cut(s) 93, 206, 373, 456, 537, 771, 1479
FspI TGCGCA 1 cut(s) 1071
GlaI GCGC 3 cut(s) 978, 1071, 1138
GluI GCNGC 7 cut(s) 93, 206, 373, 456, 537, 771, 1479
GsuI CTGGAG 2 cut(s) 1485, 1862
HaeII RGCGCY 1 cut(s) 1140
HapII CCGG 8 cut(s) 261, 439, 1027, 1128, 1256, 1376, 1521, 1731
HgaI GACGC 1 cut(s) 968
HhaI GCGC 3 cut(s) 979, 1072, 1139
Hin6I GCGC 3 cut(s) 977, 1070, 1137
HinP1I GCGC 3 cut(s) 977, 1070, 1137
HincII GTYRAC 1 cut(s) 1188
HindII GTYRAC 1 cut(s) 1188
HindIII AAGCTT 2 cut(s) 1176, 2046
HinfI GANTC 5 cut(s) 514, 1030, 1102, 1251, 1931
HpaII CCGG 8 cut(s) 261, 439, 1027, 1128, 1256, 1376, 1521, 1731
HphI GGTGA 5 cut(s) 1258, 1335, 1427, 1527, 1592
Hpy188I TCNGA 6 cut(s) 19, 418, 1101, 1167, 1555, 1940
Hpy188III TCNNGA 7 cut(s) 227, 1198, 1308, 1464, 1731, 1841, 1859
Hpy99I CGWCG 2 cut(s) 707, 1804
HpyAV CCTTC 7 cut(s) 603, 1021, 1324, 1523, 1731, 1751, 1915
HpyCH4III ACNGT 3 cut(s) 736, 914, 1551
HpyCH4IV ACGT 3 cut(s) 702, 801, 1350
HpyCH4V TGCA 6 cut(s) 174, 713, 795, 810, 1791, 2078
HpyF3I CTNAG 9 cut(s) 417, 580, 860, 1133, 1470, 1621, 1635, 1806, 2101
HpySE526I ACGT 3 cut(s) 702, 801, 1350
HspAI GCGC 3 cut(s) 977, 1070, 1137
Kpn2I TCCGGA 1 cut(s) 1730
KroI GCCGGC 1 cut(s) 1520
KroNI GCCGGC 1 cut(s) 1522
Ksp22I TGATCA 2 cut(s) 1150, 1774
Kzo9I GATC 7 cut(s) 937, 1124, 1150, 1298, 1774, 1816, 1831
LguI GCTCTTC 1 cut(s) 1306
LmnI GCTCC 3 cut(s) 266, 1276, 1466
Lsp1109I GCAGC 2 cut(s) 79, 442
LweI GCATC 6 cut(s) 414, 652, 1465, 1483, 1630, 1752
MaeII ACGT 3 cut(s) 702, 801, 1350
MaeIII GTNAC 5 cut(s) 1084, 1341, 1366, 1845, 1969
MalI GATC 7 cut(s) 939, 1126, 1152, 1300, 1776, 1818, 1833
MbiI CCGCTC 1 cut(s) 375
MboI GATC 7 cut(s) 937, 1124, 1150, 1298, 1774, 1816, 1831
MfeI CAATTG 2 cut(s) 62, 714
MflI RGATCY 1 cut(s) 1124
MhlI GDGCHC 4 cut(s) 768, 1318, 1517, 1886
MlyI GAGTC 1 cut(s) 523
MmeI TCCRAC 3 cut(s) 263, 542, 1190
MroI TCCGGA 1 cut(s) 1730
MroNI GCCGGC 1 cut(s) 1520
MseI TTAA 3 cut(s) 99, 684, 1995
MslI CAYNNNNRTG 1 cut(s) 331
MspI CCGG 8 cut(s) 261, 439, 1027, 1128, 1256, 1376, 1521, 1731
MspR9I CCNGG 5 cut(s) 306, 945, 1027, 1256, 1257
MunI CAATTG 2 cut(s) 62, 714
Mva1269I GAATGC 1 cut(s) 1740
MvaI CCWGG 2 cut(s) 306, 945
MvnI CGCG 2 cut(s) 163, 979
NaeI GCCGGC 1 cut(s) 1522
NciI CCSGG 3 cut(s) 1027, 1256, 1257
NdeII GATC 7 cut(s) 937, 1124, 1150, 1298, 1774, 1816, 1831
NgoMIV GCCGGC 1 cut(s) 1520
NheI GCTAGC 1 cut(s) 269
NlaIV GGNNCC 3 cut(s) 159, 184, 348
NmeAIII GCCGAG 2 cut(s) 745, 1496
NmuCI GTSAC 3 cut(s) 1084, 1341, 1366
NsbI TGCGCA 1 cut(s) 1071
NspI RCATGY 1 cut(s) 713
OliI CACNNNNGTG 1 cut(s) 331
PciSI GCTCTTC 1 cut(s) 1306
PctI GAATGC 1 cut(s) 1740
PdiI GCCGGC 1 cut(s) 1522
PfeI GAWTC 4 cut(s) 1030, 1102, 1251, 1931
PfoI TCCNGGA 1 cut(s) 1025
PkrI GCNGC 7 cut(s) 94, 207, 374, 457, 538, 772, 1480
PleI GAGTC 1 cut(s) 522
PpsI GAGTC 1 cut(s) 522
Ppu21I YACGTR 1 cut(s) 802
PpuMI RGGWCCY 1 cut(s) 182
Psp124BI GAGCTC 2 cut(s) 1318, 1886
Psp5II RGGWCCY 1 cut(s) 182
Psp6I CCWGG 2 cut(s) 304, 943
PspGI CCWGG 2 cut(s) 304, 943
PspN4I GGNNCC 3 cut(s) 159, 184, 348
PspPI GGNCC 4 cut(s) 182, 436, 506, 856
PspPPI RGGWCCY 1 cut(s) 182
PstNI CAGNNNCTG 1 cut(s) 1067
PsuI RGATCY 1 cut(s) 1124
RsaI GTAC 5 cut(s) 362, 916, 931, 1659, 2013
RsaNI GTAC 5 cut(s) 361, 915, 930, 1658, 2012
RseI CAYNNNNRTG 1 cut(s) 331
SacI GAGCTC 2 cut(s) 1318, 1886
SapI GCTCTTC 1 cut(s) 1306
SaqAI TTAA 3 cut(s) 99, 684, 1995
SatI GCNGC 7 cut(s) 93, 206, 373, 456, 537, 771, 1479
Sau3AI GATC 7 cut(s) 937, 1124, 1150, 1298, 1774, 1816, 1831
Sau96I GGNCC 4 cut(s) 182, 436, 506, 856
ScaI AGTACT 2 cut(s) 362, 2013
SchI GAGTC 1 cut(s) 523
ScrFI CCNGG 5 cut(s) 306, 945, 1027, 1256, 1257
SduI GDGCHC 4 cut(s) 768, 1318, 1517, 1886
SfaNI GCATC 6 cut(s) 414, 652, 1465, 1483, 1630, 1752
SinI GGWCC 2 cut(s) 182, 436
SmaI CCCGGG 1 cut(s) 1257
SmiMI CAYNNNNRTG 1 cut(s) 331
SpeI ACTAGT 1 cut(s) 1487
SspI AATATT 1 cut(s) 543
SstI GAGCTC 2 cut(s) 1318, 1886
StyD4I CCNGG 5 cut(s) 304, 943, 1025, 1254, 1255
StyI CCWWGG 2 cut(s) 883, 1683
TaaI ACNGT 3 cut(s) 736, 914, 1551
TaiI ACGT 3 cut(s) 705, 804, 1353
TaqI TCGA 8 cut(s) 317, 323, 705, 1410, 1602, 1724, 1768, 1860
TaqII GACCGA 2 cut(s) 1354, 1924
TatI WGTACW 2 cut(s) 360, 2011
TauI GCSGC 5 cut(s) 208, 375, 539, 773, 1481
TfiI GAWTC 4 cut(s) 1030, 1102, 1251, 1931
Tru1I TTAA 3 cut(s) 99, 684, 1995
Tru9I TTAA 3 cut(s) 99, 684, 1995
TscAI CASTG 3 cut(s) 939, 1072, 1531
TseFI GTSAC 3 cut(s) 1084, 1341, 1366
TseI GCWGC 2 cut(s) 92, 455
Tsp45I GTSAC 3 cut(s) 1084, 1341, 1366
TspDTI ATGAA 7 cut(s) 24, 506, 982, 1032, 1557, 2048, 2067
TspGWI ACGGA 1 cut(s) 367
TspMI CCCGGG 1 cut(s) 1255
TspRI CASTG 3 cut(s) 939, 1072, 1531
VpaK11BI GGWCC 2 cut(s) 182, 436
XagI CCTNNNNNAGG 1 cut(s) 1634
XapI RAATTY 4 cut(s) 71, 292, 386, 2080
XbaI TCTAGA 1 cut(s) 226
XceI RCATGY 1 cut(s) 713
XmaI CCCGGG 1 cut(s) 1255
ZrmI AGTACT 2 cut(s) 362, 2013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.