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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 92 |
| AciI | CCGC | 3 cut(s) | 92, 163, 527 |
| AclWI | GGATC | 1 cut(s) | 525 |
| AcoI | YGGCCR | 6 cut(s) | 10, 60, 160, 259, 319, 504 |
| AcvI | CACGTG | 1 cut(s) | 317 |
| AcyI | GRCGYC | 1 cut(s) | 75 |
| AfaI | GTAC | 1 cut(s) | 379 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 391, 458 |
| AgsI | TTSAA | 3 cut(s) | 302, 554, 605 |
| AluBI | AGCT | 4 cut(s) | 128, 268, 482, 511 |
| AluI | AGCT | 4 cut(s) | 128, 268, 482, 511 |
| AlwI | GGATC | 1 cut(s) | 525 |
| AoxI | GGCC | 6 cut(s) | 10, 60, 160, 259, 319, 504 |
| AspLEI | GCGC | 2 cut(s) | 92, 494 |
| AspS9I | GGNCC | 1 cut(s) | 544 |
| AsuHPI | GGTGA | 3 cut(s) | 83, 239, 542 |
| AsuII | TTCGAA | 1 cut(s) | 119 |
| AvaII | GGWCC | 1 cut(s) | 544 |
| BalI | TGGCCA | 1 cut(s) | 12 |
| BbrPI | CACGTG | 1 cut(s) | 317 |
| BbsI | GAAGAC | 1 cut(s) | 309 |
| BccI | CCATC | 4 cut(s) | 2, 152, 348, 505 |
| BclI | TGATCA | 2 cut(s) | 81, 169 |
| BfaI | CTAG | 4 cut(s) | 188, 386, 560, 569 |
| BisI | GCNGC | 1 cut(s) | 163 |
| BlsI | GCNGC | 1 cut(s) | 164 |
| Bme18I | GGWCC | 1 cut(s) | 544 |
| BmgT120I | GGNCC | 1 cut(s) | 544 |
| BmsI | GCATC | 3 cut(s) | 7, 264, 301 |
| BpiI | GAAGAC | 1 cut(s) | 309 |
| Bpu14I | TTCGAA | 1 cut(s) | 119 |
| Bsa29I | ATCGAT | 1 cut(s) | 309 |
| BsaAI | YACGTR | 1 cut(s) | 317 |
| BsaHI | GRCGYC | 1 cut(s) | 75 |
| BsaJI | CCNNGG | 1 cut(s) | 291 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 433, 463 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 391, 458 |
| Bse1I | ACTGG | 1 cut(s) | 73 |
| BseCI | ATCGAT | 1 cut(s) | 309 |
| BseDI | CCNNGG | 1 cut(s) | 291 |
| BseGI | GGATG | 4 cut(s) | 10, 301, 418, 468 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 391, 458 |
| BseNI | ACTGG | 1 cut(s) | 73 |
| BseRI | GAGGAG | 1 cut(s) | 438 |
| BseX3I | CGGCCG | 1 cut(s) | 504 |
| Bsh1236I | CGCG | 1 cut(s) | 92 |
| Bsh1285I | CGRYCG | 1 cut(s) | 507 |
| BshFI | GGCC | 6 cut(s) | 12, 62, 162, 261, 321, 506 |
| BshVI | ATCGAT | 1 cut(s) | 309 |
| BsiEI | CGRYCG | 1 cut(s) | 507 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 391, 458 |
| BsnI | GGCC | 6 cut(s) | 12, 62, 162, 261, 321, 506 |
| Bsp119I | TTCGAA | 1 cut(s) | 119 |
| Bsp143I | GATC | 5 cut(s) | 81, 145, 169, 517, 532 |
| BspACI | CCGC | 3 cut(s) | 92, 163, 527 |
| BspANI | GGCC | 6 cut(s) | 12, 62, 162, 261, 321, 506 |
| BspDI | ATCGAT | 1 cut(s) | 309 |
| BspFNI | CGCG | 1 cut(s) | 92 |
| BspPI | GGATC | 1 cut(s) | 525 |
| BspQI | GCTCTTC | 1 cut(s) | 402 |
| BspT104I | TTCGAA | 1 cut(s) | 119 |
| BsrI | ACTGG | 1 cut(s) | 73 |
| BssECI | CCNNGG | 1 cut(s) | 291 |
| BssMI | GATC | 5 cut(s) | 81, 145, 169, 517, 532 |
| BssNI | GRCGYC | 1 cut(s) | 75 |
| BssT1I | CCWWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 1 cut(s) | 377 |
| Bst6I | CTCTTC | 1 cut(s) | 402 |
| BstACI | GRCGYC | 1 cut(s) | 75 |
| BstBAI | YACGTR | 1 cut(s) | 317 |
| BstBI | TTCGAA | 1 cut(s) | 119 |
| BstC8I | GCNNGC | 2 cut(s) | 270, 480 |
| BstF5I | GGATG | 4 cut(s) | 10, 301, 418, 468 |
| BstFNI | CGCG | 1 cut(s) | 92 |
| BstHHI | GCGC | 2 cut(s) | 92, 494 |
| BstKTI | GATC | 5 cut(s) | 84, 148, 172, 520, 535 |
| BstMBI | GATC | 5 cut(s) | 81, 145, 169, 517, 532 |
| BstMCI | CGRYCG | 1 cut(s) | 507 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 98 |
| BstUI | CGCG | 1 cut(s) | 92 |
| BstV2I | GAAGAC | 1 cut(s) | 309 |
| BstZI | CGGCCG | 1 cut(s) | 504 |
| Bsu15I | ATCGAT | 1 cut(s) | 309 |
| BsuRI | GGCC | 6 cut(s) | 12, 62, 162, 261, 321, 506 |
| BsuTUI | ATCGAT | 1 cut(s) | 309 |
| BtsCI | GGATG | 4 cut(s) | 10, 301, 418, 468 |
| Cac8I | GCNNGC | 2 cut(s) | 270, 480 |
| CfoI | GCGC | 2 cut(s) | 92, 494 |
| Cfr13I | GGNCC | 1 cut(s) | 544 |
| ClaI | ATCGAT | 1 cut(s) | 309 |
| CseI | GACGC | 1 cut(s) | 83 |
| Csp6I | GTAC | 1 cut(s) | 378 |
| CviAII | CATG | 1 cut(s) | 14 |
| CviQI | GTAC | 1 cut(s) | 378 |
| DpnI | GATC | 5 cut(s) | 83, 147, 171, 519, 534 |
| DpnII | GATC | 5 cut(s) | 81, 145, 169, 517, 532 |
| EaeI | YGGCCR | 6 cut(s) | 10, 60, 160, 259, 319, 504 |
| EagI | CGGCCG | 1 cut(s) | 504 |
| Eam1104I | CTCTTC | 1 cut(s) | 402 |
| EarI | CTCTTC | 1 cut(s) | 402 |
| EclXI | CGGCCG | 1 cut(s) | 504 |
| Eco130I | CCWWGG | 1 cut(s) | 291 |
| Eco47I | GGWCC | 1 cut(s) | 544 |
| Eco52I | CGGCCG | 1 cut(s) | 504 |
| Eco72I | CACGTG | 1 cut(s) | 317 |
| EcoT14I | CCWWGG | 1 cut(s) | 291 |
| ErhI | CCWWGG | 1 cut(s) | 291 |
| FaeI | CATG | 1 cut(s) | 17 |
| FaiI | YATR | 7 cut(s) | 15, 59, 200, 215, 275, 428, 522 |
| FatI | CATG | 1 cut(s) | 13 |
| FauI | CCCGC | 1 cut(s) | 520 |
| FbaI | TGATCA | 2 cut(s) | 81, 169 |
| Fnu4HI | GCNGC | 1 cut(s) | 163 |
| FokI | GGATG | 4 cut(s) | 17, 308, 405, 475 |
| Fsp4HI | GCNGC | 1 cut(s) | 163 |
| FspBI | CTAG | 4 cut(s) | 188, 386, 560, 569 |
| GlaI | GCGC | 2 cut(s) | 91, 493 |
| GluI | GCNGC | 1 cut(s) | 163 |
| HaeIII | GGCC | 6 cut(s) | 12, 62, 162, 261, 321, 506 |
| HgaI | GACGC | 1 cut(s) | 83 |
| HhaI | GCGC | 2 cut(s) | 92, 494 |
| Hin1I | GRCGYC | 1 cut(s) | 75 |
| Hin1II | CATG | 1 cut(s) | 17 |
| Hin6I | GCGC | 2 cut(s) | 90, 492 |
| HinP1I | GCGC | 2 cut(s) | 90, 492 |
| HinfI | GANTC | 3 cut(s) | 95, 365, 583 |
| HphI | GGTGA | 3 cut(s) | 83, 239, 542 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 136, 345, 434 |
| Hpy188III | TCNNGA | 4 cut(s) | 149, 369, 569, 587 |
| HpyAV | CCTTC | 1 cut(s) | 104 |
| HpyCH4III | ACNGT | 1 cut(s) | 377 |
| HpyCH4IV | ACGT | 2 cut(s) | 41, 316 |
| HpyCH4V | TGCA | 1 cut(s) | 314 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 98 |
| HpySE526I | ACGT | 2 cut(s) | 41, 316 |
| Hsp92I | GRCGYC | 1 cut(s) | 75 |
| Hsp92II | CATG | 1 cut(s) | 17 |
| HspAI | GCGC | 2 cut(s) | 90, 492 |
| Ksp22I | TGATCA | 2 cut(s) | 81, 169 |
| Kzo9I | GATC | 5 cut(s) | 81, 145, 169, 517, 532 |
| LguI | GCTCTTC | 1 cut(s) | 402 |
| LmnI | GCTCC | 1 cut(s) | 499 |
| LpnPI | CCDG | 3 cut(s) | 54, 341, 600 |
| LweI | GCATC | 3 cut(s) | 7, 264, 301 |
| MaeI | CTAG | 4 cut(s) | 188, 386, 560, 569 |
| MaeII | ACGT | 2 cut(s) | 41, 316 |
| MaeIII | GTNAC | 1 cut(s) | 71 |
| MalI | GATC | 5 cut(s) | 83, 147, 171, 519, 534 |
| MboI | GATC | 5 cut(s) | 81, 145, 169, 517, 532 |
| MboII | GAAGA | 4 cut(s) | 108, 314, 389, 492 |
| MlsI | TGGCCA | 1 cut(s) | 12 |
| MluCI | AATT | 3 cut(s) | 48, 389, 554 |
| MluNI | TGGCCA | 1 cut(s) | 12 |
| MlyI | GAGTC | 2 cut(s) | 89, 592 |
| MnlI | CCTC | 3 cut(s) | 46, 454, 459 |
| Mox20I | TGGCCA | 1 cut(s) | 12 |
| MscI | TGGCCA | 1 cut(s) | 12 |
| Msp20I | TGGCCA | 1 cut(s) | 12 |
| MspA1I | CMGCKG | 1 cut(s) | 527 |
| MvnI | CGCG | 1 cut(s) | 92 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 98 |
| NdeII | GATC | 5 cut(s) | 81, 145, 169, 517, 532 |
| NlaIII | CATG | 1 cut(s) | 17 |
| NmeAIII | GCCGAG | 3 cut(s) | 77, 347, 532 |
| NmuCI | GTSAC | 1 cut(s) | 71 |
| NspV | TTCGAA | 1 cut(s) | 119 |
| PciSI | GCTCTTC | 1 cut(s) | 402 |
| PfeI | GAWTC | 1 cut(s) | 365 |
| PkrI | GCNGC | 1 cut(s) | 164 |
| PleI | GAGTC | 2 cut(s) | 89, 591 |
| PmaCI | CACGTG | 1 cut(s) | 317 |
| PmlI | CACGTG | 1 cut(s) | 317 |
| PpsI | GAGTC | 2 cut(s) | 89, 591 |
| Ppu21I | YACGTR | 1 cut(s) | 317 |
| PspCI | CACGTG | 1 cut(s) | 317 |
| PspPI | GGNCC | 1 cut(s) | 544 |
| RsaI | GTAC | 1 cut(s) | 379 |
| RsaNI | GTAC | 1 cut(s) | 378 |
| SapI | GCTCTTC | 1 cut(s) | 402 |
| SatI | GCNGC | 1 cut(s) | 163 |
| Sau3AI | GATC | 5 cut(s) | 81, 145, 169, 517, 532 |
| Sau96I | GGNCC | 1 cut(s) | 544 |
| SchI | GAGTC | 2 cut(s) | 89, 592 |
| SfaNI | GCATC | 3 cut(s) | 7, 264, 301 |
| SfuI | TTCGAA | 1 cut(s) | 119 |
| SinI | GGWCC | 1 cut(s) | 544 |
| SmlI | CTYRAG | 1 cut(s) | 629 |
| SmoI | CTYRAG | 1 cut(s) | 629 |
| Sse9I | AATT | 3 cut(s) | 48, 389, 554 |
| SsiI | CCGC | 3 cut(s) | 92, 163, 527 |
| SspMI | CTAG | 4 cut(s) | 188, 386, 560, 569 |
| StyI | CCWWGG | 1 cut(s) | 291 |
| TaaI | ACNGT | 1 cut(s) | 377 |
| TaiI | ACGT | 2 cut(s) | 44, 319 |
| TaqI | TCGA | 4 cut(s) | 119, 251, 309, 370 |
| TasI | AATT | 3 cut(s) | 48, 389, 554 |
| TatI | WGTACW | 1 cut(s) | 377 |
| TauI | GCSGC | 1 cut(s) | 165 |
| TfiI | GAWTC | 1 cut(s) | 365 |
| TseFI | GTSAC | 1 cut(s) | 71 |
| Tsp45I | GTSAC | 1 cut(s) | 71 |
| VpaK11BI | GGWCC | 1 cut(s) | 544 |
| XbaI | TCTAGA | 1 cut(s) | 568 |
| XspI | CTAG | 4 cut(s) | 188, 386, 560, 569 |