Rmu_sc0002942.1_g000019

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002942.1
OG0000063
Physical Location & Seq
Reverse (-)
44514 .. 47694
3181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002942.1_g000019.1.cds

Sequence Viewer

Length: 2616 bp
atggcttcgaaagggaccggagaagacaattatgaaggcaaacaaaaaagtatcaccaaacgctcatttgcatttgcggaagcgctaagtcaagccactgaaaagaatgcctgggccgtcatgaatagaataacacaacgagtcccgaatgaaggtggggtacgtcaacttggcccaagtttctatagtgatataccagccgatgtggaaaaagttgtgagccagcatgaagtagatgattctagctacttcagtgaaggaaaagcatggggagcatggggaacaaaaccaggaaaatggcctggtgaaacggccaactggattccgtgggtagaacgagtcgagaagcgatttggagaaatatggaaacgacttggcatctatgacgccatcaagctgtccaccattactattccttgtgaccactccttgctggctgccgctatgtgtttttggagttctcaaacaaactctctagagcttcagtttggtgcacttagtccgaccttgattgatatagcggccattataggcctgccgtcatatgggcaagtggtggacattgtatttgcaagaggaaagtttgacattgatcttggtagtgagctaagagatcgaagtaagggcagaccagccgttgccaattataatacatggattgaggtgtttaacagcggtttggggaggaagtcacctgatagtgatggcagcccgaaggagaaagaggaaaaccaacaggagacaatggtagttactcctgtagagcatgcgacgtttcttgccttttggatatgtaagttcttagtgtgcacaacttccaaaaaagtgaatgtggaatactacaagttggctgaagcattagcaagcaaagaagtgcaagagagtgatcagccattagctcttggtccatttgtgctagcccacttatacagatgtcttcaccattgtgtgactgaaggactgaacctaaattggcctgggccattgtggatttttcagttgtggcttcatacttatttctctgctttcagacagccagtatgccgtttgtttcaacaggaagtatccaccctaccttgtcgtggatatcagccaacacgcctcagaaagcgagacgagatgggagactgcgtgttcagcgtggaagagtgcaatagtcgtcagttgggatattatcaagccatacctgctcctgttccagaatcgtcataccgatatagttcattacgagctgttttttccaacgaggacgacattgagcagaataataaggcgtttgtgtacaacatgagctttcccatgaagacaagagtagcaactagcaagagttcctcccagttcagagagtggtgggcgcgacgagtaggtagtcgttttaaagatgggttggtgtcggctaggcgatcgacttttgcaggaaatccatgggcacaagagaagccgaaagttgtaaggcgtggtaaaataataagcaaagttgctaaagcaatcccaactataagtggccaagagtctttgaagaagtgtactaaaggtggcacaaagagaaaggccatccatagtgcggccactgaggcggccaaagatggtgccaccatgtcttcaacgtctcaatctcctccagcgaaacaatcggcaaaacaagacgatcaatcctctgaaagtgaagaacaattgtgcatggccaaacgaagcccaagcatccaaaatgccattcctagtgaaacagaggaatctgtggagctaaccattaacaaaggtgaccaaccagttagtgatgaacctgcggggcagatagtgtctgttgaaagagtggccgaaagtgaagtgatgaatattgaggaggcacttgtactcactcaaacttcaacgcaggccagtactcccttgtcggtaacttcgtcgcttagtgagaaactagtgtcggctaacgaaccggaaagtcatcaagggtttgaagcagaactgcaagctttcatgagggcattttcggccgatgctctaatccaaccagaatgttgctcggccattttgcagttaccgaccgctcaattgacatcaagggaggaaattgatggggctctgaaggtggtaaaggaaacgttagcgctgccattaaaagaatttgtggaaacaggccaactatcaaaagtgaaagtggccatggatttgttacttggagccaaatactttgcccctcccaaggtagccctcattggtgagaaggtagaagtgttgacccaacaaatatcccgtgtagctggtttatatcaagaaatagaaaaaaggagacaacaaatcttggcttgtgagaaaatgaagaaagccttggttcccgagtttgggtggtgtatggaacaaaaacgggttgtggagtctcttgaaggcaagataaatgagttggaaagacaattcgcgtccttgaaacaagagagacaagaagtgggggaaaagctccttcaaaggagtaagcagtgtttccaaagccaaggacaactgaaaaagatagaggccgaattgaaaaatttcgagcctaggtgtatgcaacttgagagtgaccttcaggacactggttgtaccttgggagctcttaaagctttattagccgaggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

871

Amino Acids

97.11

Weight (kDa)

6.6

Isoelectric Point (pI)

53.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
Acc36I ACCTGC 2 cut(s) 1195, 1792
AccB1I GGYRCC 1 cut(s) 1589
AccBSI CCGCTC 1 cut(s) 2048
AccII CGCG 2 cut(s) 1357, 2417
AciI CCGC 8 cut(s) 77, 441, 521, 675, 1565, 1577, 1787, 2046
AclI AACGTT 1 cut(s) 2102
AcsI RAATTY 2 cut(s) 2123, 2524
AcuI CTGAAG 6 cut(s) 235, 467, 873, 975, 2105, 2546
AcyI GRCGYC 1 cut(s) 387
AfaI GTAC 6 cut(s) 162, 1283, 1528, 1854, 1882, 2578
AfeI AGCGCT 2 cut(s) 84, 2109
AfiI CCNNNNNNNGG 7 cut(s) 152, 545, 1082, 1564, 2203, 2342, 2343
AhlI ACTAGT 1 cut(s) 1918
AjnI CCWGG 4 cut(s) 110, 289, 301, 976
AjuI GAANNNNNNNTTGG 4 cut(s) 1698, 1730, 2312, 2344
AleI CACNNNNGTG 1 cut(s) 945
Alw21I GWGCWC 3 cut(s) 496, 812, 2590
Alw26I GTCTC 7 cut(s) 734, 1107, 1119, 1614, 2284, 2382, 2428
Alw44I GTGCAC 2 cut(s) 492, 808
Ama87I CYCGRG 1 cut(s) 2336
Aor51HI AGCGCT 2 cut(s) 84, 2109
ApaLI GTGCAC 2 cut(s) 492, 808
ApeKI GCWGC 3 cut(s) 437, 708, 2110
ApoI RAATTY 2 cut(s) 2123, 2524
ArsI GACNNNNNNTTYG 2 cut(s) 551, 583
Asp700I GAANNNNTTC 1 cut(s) 2525
AspA2I CCTAGG 1 cut(s) 2534
AspLEI GCGC 3 cut(s) 85, 1357, 2110
AspS9I GGNCC 5 cut(s) 15, 114, 173, 905, 980
AsuHPI GGTGA 6 cut(s) 46, 317, 684, 932, 1772, 2231
AsuII TTCGAA 1 cut(s) 8
AsuNHI GCTAGC 1 cut(s) 916
AvaI CYCGRG 1 cut(s) 2336
AvaII GGWCC 2 cut(s) 15, 905
AvrII CCTAGG 1 cut(s) 2534
BaeGI GKGCMC 3 cut(s) 496, 812, 1432
BalI TGGCCA 3 cut(s) 1506, 1685, 2162
BanI GGYRCC 1 cut(s) 1589
BanII GRGCYC 2 cut(s) 2083, 2590
BarI GAAGNNNNNNTAC 2 cut(s) 144, 176
BbsI GAAGAC 4 cut(s) 30, 929, 1310, 1593
Bbv12I GWGCWC 3 cut(s) 496, 812, 2590
BbvI GCAGC 3 cut(s) 424, 720, 2097
BccI CCATC 7 cut(s) 398, 698, 1114, 1376, 1562, 1580, 2069
BceAI ACGGC 5 cut(s) 101, 327, 523, 620, 1029
BciT130I CCWGG 4 cut(s) 112, 291, 303, 978
BciVI GTATCC 1 cut(s) 1075
BclI TGATCA 1 cut(s) 886
BcoDI GTCTC 7 cut(s) 734, 1107, 1119, 1614, 2284, 2382, 2428
BcuI ACTAGT 1 cut(s) 1918
BfaI CTAG 8 cut(s) 243, 476, 917, 1320, 1398, 1719, 1919, 2535
BfmI CTRYAG 2 cut(s) 184, 759
BfoI RGCGCY 2 cut(s) 86, 2111
BfuAI ACCTGC 2 cut(s) 1195, 1792
BfuI GTATCC 1 cut(s) 1075
BglI GCCNNNNNGGC 1 cut(s) 1574
BisI GCNGC 7 cut(s) 438, 441, 522, 709, 1566, 1578, 2111
BlnI CCTAGG 1 cut(s) 2534
BlsI GCNGC 7 cut(s) 439, 442, 523, 710, 1567, 1579, 2112
BmcAI AGTACT 1 cut(s) 1882
Bme1390I CCNGG 4 cut(s) 112, 291, 303, 978
Bme18I GGWCC 2 cut(s) 15, 905
BmeT110I CYCGRG 1 cut(s) 2336
BmgT120I GGNCC 5 cut(s) 15, 114, 173, 905, 980
BmiI GGNNCC 4 cut(s) 16, 1591, 2182, 2334
BmrFI CCNGG 4 cut(s) 112, 291, 303, 978
BmrI ACTGGG 1 cut(s) 1330
BmsI GCATC 3 cut(s) 387, 1710, 1987
BmtI GCTAGC 1 cut(s) 920
BmuI ACTGGG 1 cut(s) 1330
BpiI GAAGAC 4 cut(s) 30, 929, 1310, 1593
BpmI CTGGAG 1 cut(s) 1605
Bpu14I TTCGAA 1 cut(s) 8
BpuEI CTTGAG 1 cut(s) 2570
BsaHI GRCGYC 1 cut(s) 387
BsaWI WCCGGW 2 cut(s) 17, 1936
BsaXI ACNNNNNCTCC 2 cut(s) 1116, 1146
Bsc4I CCNNNNNNNGG 7 cut(s) 152, 545, 1082, 1564, 2203, 2342, 2343
Bse1I ACTGG 6 cut(s) 323, 1037, 1336, 1769, 1878, 2575
BseBI CCWGG 4 cut(s) 112, 291, 303, 978
BseGI GGATG 2 cut(s) 1554, 1701
BseLI CCNNNNNNNGG 7 cut(s) 152, 545, 1082, 1564, 2203, 2342, 2343
BseMII CTCAG 2 cut(s) 1117, 1563
BseNI ACTGG 6 cut(s) 323, 1037, 1336, 1769, 1878, 2575
BseRI GAGGAG 2 cut(s) 1608, 1856
BseSI GKGCMC 3 cut(s) 496, 812, 1432
BseX3I CGGCCG 1 cut(s) 1992
BseXI GCAGC 3 cut(s) 424, 720, 2097
Bsh1236I CGCG 2 cut(s) 1357, 2417
Bsh1285I CGRYCG 3 cut(s) 1406, 1995, 2046
BshNI GGYRCC 1 cut(s) 1589
BsiEI CGRYCG 3 cut(s) 1406, 1995, 2046
BsiHKAI GWGCWC 3 cut(s) 496, 812, 2590
BsiHKCI CYCGRG 1 cut(s) 2336
BsiSI CCGG 2 cut(s) 18, 1937
BslFI GGGAC 2 cut(s) 28, 128
BslI CCNNNNNNNGG 7 cut(s) 152, 545, 1082, 1564, 2203, 2342, 2343
BsmAI GTCTC 7 cut(s) 734, 1107, 1119, 1614, 2284, 2382, 2428
BsmBI CGTCTC 2 cut(s) 1107, 1614
BsmFI GGGAC 2 cut(s) 28, 128
BsmI GAATGC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 2336
Bsp119I TTCGAA 1 cut(s) 8
Bsp1286I GDGCHC 5 cut(s) 496, 812, 1432, 2083, 2590
Bsp1407I TGTACA 1 cut(s) 1281
Bsp143I GATC 5 cut(s) 592, 613, 886, 1403, 1648
Bsp19I CCATGG 2 cut(s) 1424, 2163
BspACI CCGC 8 cut(s) 77, 441, 521, 675, 1565, 1577, 1787, 2046
BspCNI CTCAG 2 cut(s) 1116, 1564
BspFNI CGCG 2 cut(s) 1357, 2417
BspHI TCATGA 2 cut(s) 120, 1977
BspLI GGNNCC 4 cut(s) 16, 1591, 2182, 2334
BspMI ACCTGC 2 cut(s) 1195, 1792
BspOI GCTAGC 1 cut(s) 920
BspT104I TTCGAA 1 cut(s) 8
BspT107I GGYRCC 1 cut(s) 1589
BsrBI CCGCTC 1 cut(s) 2048
BsrGI TGTACA 1 cut(s) 1281
BsrI ACTGG 6 cut(s) 323, 1037, 1336, 1769, 1878, 2575
BssMI GATC 5 cut(s) 592, 613, 886, 1403, 1648
BssNI GRCGYC 1 cut(s) 387
BssT1I CCWWGG 7 cut(s) 1424, 2163, 2202, 2328, 2488, 2534, 2580
Bst2UI CCWGG 4 cut(s) 112, 291, 303, 978
Bst6I CTCTTC 1 cut(s) 1140
BstACI GRCGYC 1 cut(s) 387
BstAUI TGTACA 1 cut(s) 1281
BstBI TTCGAA 1 cut(s) 8
BstC8I GCNNGC 8 cut(s) 224, 435, 536, 768, 865, 918, 1875, 1971
BstDEI CTNAG 7 cut(s) 86, 497, 608, 802, 1103, 1572, 1907
BstDSI CCRYGG 3 cut(s) 326, 1424, 2163
BstEII GGTNACC 1 cut(s) 1760
BstF5I GGATG 2 cut(s) 1554, 1701
BstFNI CGCG 2 cut(s) 1357, 2417
BstH2I RGCGCY 2 cut(s) 86, 2111
BstHHI GCGC 3 cut(s) 85, 1357, 2110
BstKTI GATC 5 cut(s) 595, 616, 889, 1406, 1651
BstMAI GTCTC 7 cut(s) 734, 1107, 1119, 1614, 2284, 2382, 2428
BstMBI GATC 5 cut(s) 592, 613, 886, 1403, 1648
BstMCI CGRYCG 3 cut(s) 1406, 1995, 2046
BstMWI GCNNNNNNNGC 7 cut(s) 272, 1137, 1187, 1574, 1991, 2594, 2603
BstNI CCWGG 4 cut(s) 112, 291, 303, 978
BstNSI RCATGY 1 cut(s) 770
BstPI GGTNACC 1 cut(s) 1760
BstSCI CCNGG 4 cut(s) 110, 289, 301, 976
BstSFI CTRYAG 2 cut(s) 184, 759
BstSLI GKGCMC 3 cut(s) 496, 812, 1432
BstUI CGCG 2 cut(s) 1357, 2417
BstV1I GCAGC 3 cut(s) 424, 720, 2097
BstV2I GAAGAC 4 cut(s) 30, 929, 1310, 1593
BstXI CCANNNNNNTGG 1 cut(s) 297
BstZI CGGCCG 1 cut(s) 1992
BsuI GTATCC 1 cut(s) 1075
BtgI CCRYGG 3 cut(s) 326, 1424, 2163
BtsCI GGATG 2 cut(s) 1554, 1701
BtsI GCAGTG 1 cut(s) 2480
BtsIMutI CAGTG 5 cut(s) 96, 259, 1569, 2480, 2568
BveI ACCTGC 2 cut(s) 1195, 1792
Cac8I GCNNGC 8 cut(s) 224, 435, 536, 768, 865, 918, 1875, 1971
CciI TCATGA 2 cut(s) 120, 1977
CfoI GCGC 3 cut(s) 85, 1357, 2110
Cfr13I GGNCC 5 cut(s) 15, 114, 173, 905, 980
CseI GACGC 2 cut(s) 395, 2406
Csp6I GTAC 6 cut(s) 161, 1282, 1527, 1853, 1881, 2577
CviQI GTAC 6 cut(s) 161, 1282, 1527, 1853, 1881, 2577
DdeI CTNAG 7 cut(s) 86, 497, 608, 802, 1103, 1572, 1907
DpnI GATC 5 cut(s) 594, 615, 888, 1405, 1650
DpnII GATC 5 cut(s) 592, 613, 886, 1403, 1648
DraI TTTAAA 1 cut(s) 1378
EagI CGGCCG 1 cut(s) 1992
Eam1104I CTCTTC 1 cut(s) 1140
EarI CTCTTC 1 cut(s) 1140
Ecl136II GAGCTC 1 cut(s) 2588
EclXI CGGCCG 1 cut(s) 1992
Eco130I CCWWGG 7 cut(s) 1424, 2163, 2202, 2328, 2488, 2534, 2580
Eco147I AGGCCT 1 cut(s) 534
Eco24I GRGCYC 2 cut(s) 2083, 2590
Eco32I GATATC 1 cut(s) 1088
Eco47I GGWCC 2 cut(s) 15, 905
Eco47III AGCGCT 2 cut(s) 84, 2109
Eco52I CGGCCG 1 cut(s) 1992
Eco53kI GAGCTC 1 cut(s) 2588
Eco57I CTGAAG 6 cut(s) 235, 467, 873, 975, 2105, 2546
Eco88I CYCGRG 1 cut(s) 2336
Eco91I GGTNACC 1 cut(s) 1760
EcoICRI GAGCTC 1 cut(s) 2588
EcoO65I GGTNACC 1 cut(s) 1760
EcoRII CCWGG 4 cut(s) 110, 289, 301, 976
EcoRV GATATC 1 cut(s) 1088
EcoT14I CCWWGG 7 cut(s) 1424, 2163, 2202, 2328, 2488, 2534, 2580
EcoT38I GRGCYC 2 cut(s) 2083, 2590
ErhI CCWWGG 7 cut(s) 1424, 2163, 2202, 2328, 2488, 2534, 2580
Esp3I CGTCTC 2 cut(s) 1107, 1614
FalI AAGNNNNNCTT 2 cut(s) 2312, 2344
FaqI GGGAC 2 cut(s) 28, 128
FauI CCCGC 1 cut(s) 1780
FauNDI CATATG 1 cut(s) 544
FbaI TGATCA 1 cut(s) 886
Fnu4HI GCNGC 7 cut(s) 438, 441, 522, 709, 1566, 1578, 2111
FokI GGATG 2 cut(s) 1541, 1688
FriOI GRGCYC 2 cut(s) 2083, 2590
Fsp4HI GCNGC 7 cut(s) 438, 441, 522, 709, 1566, 1578, 2111
FspBI CTAG 8 cut(s) 243, 476, 917, 1320, 1398, 1719, 1919, 2535
GlaI GCGC 3 cut(s) 84, 1356, 2109
GluI GCNGC 7 cut(s) 438, 441, 522, 709, 1566, 1578, 2111
GsuI CTGGAG 1 cut(s) 1605
HaeII RGCGCY 2 cut(s) 86, 2111
HapII CCGG 2 cut(s) 18, 1937
HgaI GACGC 2 cut(s) 395, 2406
HhaI GCGC 3 cut(s) 85, 1357, 2110
Hin1I GRCGYC 1 cut(s) 387
Hin6I GCGC 3 cut(s) 83, 1355, 2108
HinP1I GCGC 3 cut(s) 83, 1355, 2108
HincII GTYRAC 2 cut(s) 167, 2238
HindII GTYRAC 2 cut(s) 167, 2238
HindIII AAGCTT 2 cut(s) 1971, 2595
HinfI GANTC 8 cut(s) 141, 239, 322, 339, 1202, 1511, 1733, 2375
HpaII CCGG 2 cut(s) 18, 1937
HphI GGTGA 6 cut(s) 46, 317, 684, 932, 1772, 2231
Hpy166II GTNNAC 8 cut(s) 167, 402, 494, 559, 810, 1282, 1527, 2238
Hpy188I TCNGA 6 cut(s) 504, 1031, 1106, 1343, 1660, 2085
Hpy8I GTNNAC 8 cut(s) 167, 402, 494, 559, 810, 1282, 1527, 2238
Hpy99I CGWCG 3 cut(s) 775, 1362, 1906
HpyCH4IV ACGT 4 cut(s) 163, 773, 1607, 2102
HpyF10VI GCNNNNNNNGC 7 cut(s) 272, 1137, 1187, 1574, 1991, 2594, 2603
HpyF3I CTNAG 7 cut(s) 86, 497, 608, 802, 1103, 1572, 1907
HpySE526I ACGT 4 cut(s) 163, 773, 1607, 2102
Hsp92I GRCGYC 1 cut(s) 387
HspAI GCGC 3 cut(s) 83, 1355, 2108
Ksp22I TGATCA 1 cut(s) 886
Kzo9I GATC 5 cut(s) 592, 613, 886, 1403, 1648
LmnI GCTCC 6 cut(s) 272, 1195, 1741, 2180, 2460, 2585
Lsp1109I GCAGC 3 cut(s) 424, 720, 2097
LweI GCATC 3 cut(s) 387, 1710, 1987
MaeI CTAG 8 cut(s) 243, 476, 917, 1320, 1398, 1719, 1919, 2535
MaeII ACGT 4 cut(s) 163, 773, 1607, 2102
MaeIII GTNAC 9 cut(s) 419, 690, 751, 949, 1760, 1894, 2037, 2172, 2555
MalI GATC 5 cut(s) 594, 615, 888, 1405, 1650
MbiI CCGCTC 1 cut(s) 2048
MboI GATC 5 cut(s) 592, 613, 886, 1403, 1648
MboII GAAGA 8 cut(s) 35, 929, 1157, 1315, 1531, 1593, 1679, 2332
MfeI CAATTG 2 cut(s) 1673, 2051
MhlI GDGCHC 5 cut(s) 496, 812, 1432, 2083, 2590
MlsI TGGCCA 3 cut(s) 1506, 1685, 2162
MluNI TGGCCA 3 cut(s) 1506, 1685, 2162
MlyI GAGTC 4 cut(s) 150, 348, 1520, 2384
MmeI TCCRAC 4 cut(s) 527, 1266, 2032, 2382
Mox20I TGGCCA 3 cut(s) 1506, 1685, 2162
MroXI GAANNNNTTC 1 cut(s) 2525
MscI TGGCCA 3 cut(s) 1506, 1685, 2162
MseI TTAA 5 cut(s) 669, 1377, 1752, 2117, 2592
MslI CAYNNNNRTG 1 cut(s) 945
Msp20I TGGCCA 3 cut(s) 1506, 1685, 2162
MspA1I CMGCKG 1 cut(s) 675
MspI CCGG 2 cut(s) 18, 1937
MspR9I CCNGG 4 cut(s) 112, 291, 303, 978
MunI CAATTG 2 cut(s) 1673, 2051
Mva1269I GAATGC 1 cut(s) 112
MvaI CCWGG 4 cut(s) 112, 291, 303, 978
MvnI CGCG 2 cut(s) 1357, 2417
MwoI GCNNNNNNNGC 7 cut(s) 272, 1137, 1187, 1574, 1991, 2594, 2603
NcoI CCATGG 2 cut(s) 1424, 2163
NdeI CATATG 1 cut(s) 544
NdeII GATC 5 cut(s) 592, 613, 886, 1403, 1648
NheI GCTAGC 1 cut(s) 916
NlaIV GGNNCC 4 cut(s) 16, 1591, 2182, 2334
NmeAIII GCCGAG 1 cut(s) 2003
NmuCI GTSAC 5 cut(s) 419, 690, 949, 1760, 2555
NspI RCATGY 1 cut(s) 770
NspV TTCGAA 1 cut(s) 8
OliI CACNNNNGTG 1 cut(s) 945
PaeI GCATGC 1 cut(s) 770
PagI TCATGA 2 cut(s) 120, 1977
PceI AGGCCT 1 cut(s) 534
PcsI WCGNNNNNNNCGW 1 cut(s) 1898
PctI GAATGC 1 cut(s) 112
PdmI GAANNNNTTC 1 cut(s) 2525
PfeI GAWTC 4 cut(s) 239, 322, 1202, 1733
PkrI GCNGC 7 cut(s) 439, 442, 523, 710, 1567, 1579, 2112
Ple19I CGATCG 1 cut(s) 1406
PleI GAGTC 4 cut(s) 149, 347, 1519, 2383
PpsI GAGTC 4 cut(s) 149, 347, 1519, 2383
PsiI TTATAA 1 cut(s) 648
Psp124BI GAGCTC 1 cut(s) 2590
Psp1406I AACGTT 1 cut(s) 2102
Psp6I CCWGG 4 cut(s) 110, 289, 301, 976
PspEI GGTNACC 1 cut(s) 1760
PspGI CCWGG 4 cut(s) 110, 289, 301, 976
PspN4I GGNNCC 4 cut(s) 16, 1591, 2182, 2334
PspPI GGNCC 5 cut(s) 15, 114, 173, 905, 980
PvuI CGATCG 1 cut(s) 1406
RsaI GTAC 6 cut(s) 162, 1283, 1528, 1854, 1882, 2578
RsaNI GTAC 6 cut(s) 161, 1282, 1527, 1853, 1881, 2577
RseI CAYNNNNRTG 1 cut(s) 945
SacI GAGCTC 1 cut(s) 2590
SaqAI TTAA 5 cut(s) 669, 1377, 1752, 2117, 2592
SatI GCNGC 7 cut(s) 438, 441, 522, 709, 1566, 1578, 2111
Sau3AI GATC 5 cut(s) 592, 613, 886, 1403, 1648
Sau96I GGNCC 5 cut(s) 15, 114, 173, 905, 980
ScaI AGTACT 1 cut(s) 1882
SchI GAGTC 4 cut(s) 150, 348, 1520, 2384
ScrFI CCNGG 4 cut(s) 112, 291, 303, 978
SduI GDGCHC 5 cut(s) 496, 812, 1432, 2083, 2590
SfaNI GCATC 3 cut(s) 387, 1710, 1987
SfcI CTRYAG 2 cut(s) 184, 759
SfuI TTCGAA 1 cut(s) 8
SinI GGWCC 2 cut(s) 15, 905
SmiMI CAYNNNNRTG 1 cut(s) 945
SmlI CTYRAG 1 cut(s) 2549
SmoI CTYRAG 1 cut(s) 2549
SpeI ACTAGT 1 cut(s) 1918
SphI GCATGC 1 cut(s) 770
SseBI AGGCCT 1 cut(s) 534
SsiI CCGC 8 cut(s) 77, 441, 521, 675, 1565, 1577, 1787, 2046
SspI AATATT 1 cut(s) 1837
SspMI CTAG 8 cut(s) 243, 476, 917, 1320, 1398, 1719, 1919, 2535
SstI GAGCTC 1 cut(s) 2590
StuI AGGCCT 1 cut(s) 534
StyD4I CCNGG 4 cut(s) 110, 289, 301, 976
StyI CCWWGG 7 cut(s) 1424, 2163, 2202, 2328, 2488, 2534, 2580
TaiI ACGT 4 cut(s) 166, 776, 1610, 2105
TaqI TCGA 5 cut(s) 8, 342, 616, 1406, 2529
TatI WGTACW 4 cut(s) 1281, 1526, 1852, 1880
TauI GCSGC 4 cut(s) 443, 524, 1568, 1580
TfiI GAWTC 4 cut(s) 239, 322, 1202, 1733
Tru1I TTAA 5 cut(s) 669, 1377, 1752, 2117, 2592
Tru9I TTAA 5 cut(s) 669, 1377, 1752, 2117, 2592
TscAI CASTG 5 cut(s) 103, 259, 1576, 2480, 2575
TseFI GTSAC 5 cut(s) 419, 690, 949, 1760, 2555
TseI GCWGC 3 cut(s) 437, 708, 2110
Tsp45I GTSAC 5 cut(s) 419, 690, 949, 1760, 2555
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 5 cut(s) 103, 259, 1576, 2480, 2575
VneI GTGCAC 2 cut(s) 492, 808
VpaK11BI GGWCC 2 cut(s) 15, 905
XapI RAATTY 2 cut(s) 2123, 2524
XbaI TCTAGA 1 cut(s) 475
XceI RCATGY 1 cut(s) 770
XmaJI CCTAGG 1 cut(s) 2534
XmnI GAANNNNTTC 1 cut(s) 2525
XspI CTAG 8 cut(s) 243, 476, 917, 1320, 1398, 1719, 1919, 2535
ZrmI AGTACT 1 cut(s) 1882
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.