Rh2DG375700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000063
Physical Location & Seq
Forward (+)
53732176 .. 53733794
1619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG375700.1

Sequence Viewer

Length: 1203 bp
ATGACCAGGGAAGAGTTTGCCATATGCTATAGCCAAGATTATCCTTCTTGTCTTGCATTTGACATAACTAAGCCATGGGAGAGTTCTTTGGACTTGTCAGTACTTCTACCTTGGGGAACCATTCTGATTTCTAGAGACATAAACTATGGTCTCAAGGGTACACTGGGTAAGCCAGGGGTTAAGGCTTACCTTCTAAACTTTGTTGCGTGTCAGCTTGGCTTCATACAAAGTTGTCCAGCCTTCTTTCTAATGTCCCAGAATCGTTTTTCTTCATGGAGAGGTGGGTTTACAGACACTGCGCATTGTTCGGCTATCACTCAAACTCAGTTTGGCAAGTTTGAGAGATCCGACCAGAGCGCCCGCAAACCTGATCATCGATCAACCCCGACTTTCCAAGCTTGGTGGTCAACATTTATCAAGGAGAAACTTGGAGAGGACTTGTGGACAACCGACCGTATTGCCTTGTATGTATTTCCGGGCTTATTCGCCAAAAAAGGCAATGGCAAGAAGAAAGCACCAGTTGCCAAGTCGAAATCCAAAGAATTGTCCAAGGAAGAGAAAACATCAAAGAAACAAGGATCAAAGTCAGGAAGAGATTTGCCTACCAAGAAGGTAAAGAAGTCGCCTGATGTGGTGGAGAGTTCGGTCACAAATCCGACCAGCATTATGGTTAGTGAAGACATAATCTTCGAGGATGATATGGATAATAGCCAAAATGCTCTAGCTGAAAATCACATCATGTCTAGACCTAAAGATGCTGCCGAAACTAGTGATGCCTCAACCAATAGCACGGACTCGGCCGACAGCGAAGGTTTGCCTGATGAAGCACAGTCAGAAAACTTTGAACATGAGAGAGATGGCCACATTGATCACTCTTTGCAACCTCCTGAGAGATCCATGTTTGAAATTGATATGGATGACTTGGGTGAGAACCAGTTTCCTAATATCGACCAACCACTCGCAAACTCAGCCAACCTTGCTAAGGATGTGGAAGACATCGATGTACGAGAATCTCGAAGCAGTTCAACCTTGGAATTAGCTCTTCTCAACCCAACTGAACCAAATCCTTCTATGTCCGGAATGCTTACCTCCCCTCTTACTGAAGGGATGCCTCGAAGTGATCAAGCTATCATTTACGCCCCATCGTCGGCTGAGCCTATGGTGAGTGACTATACAACTTTAGGTTTTGTTTGCCCTAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

400

Amino Acids

44.28

Weight (kDa)

4.89

Isoelectric Point (pI)

51.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 300
AccIII TCCGGA 1 cut(s) 1076
AciI CCGC 1 cut(s) 361
AclWI GGATC 3 cut(s) 339, 586, 888
AcoI YGGCCR 2 cut(s) 798, 859
AcuI CTGAAG 1 cut(s) 1122
AfaI GTAC 3 cut(s) 102, 160, 1005
AfiI CCNNNNNNNGG 2 cut(s) 982, 1147
AgsI TTSAA 3 cut(s) 845, 905, 1026
AhlI ACTAGT 1 cut(s) 767
AjnI CCWGG 2 cut(s) 5, 172
AluBI AGCT 6 cut(s) 214, 398, 725, 1040, 1127, 1200
AluI AGCT 6 cut(s) 214, 398, 725, 1040, 1127, 1200
Alw26I GTCTC 2 cut(s) 129, 155
AlwI GGATC 3 cut(s) 339, 586, 888
AlwNI CAGNNNCTG 1 cut(s) 296
Aor13HI TCCGGA 1 cut(s) 1076
AoxI GGCC 2 cut(s) 798, 859
ApeKI GCWGC 1 cut(s) 758
ArsI GACNNNNNNTTYG 2 cut(s) 671, 703
Asp700I GAANNNNTTC 1 cut(s) 1021
AspLEI GCGC 2 cut(s) 301, 359
AsuC2I CCSGG 1 cut(s) 477
AsuHPI GGTGA 2 cut(s) 938, 1174
BalI TGGCCA 1 cut(s) 861
BbsI GAAGAC 2 cut(s) 684, 999
BbvI GCAGC 1 cut(s) 745
BccI CCATC 2 cut(s) 851, 1150
BcgI CGANNNNNNTGC 2 cut(s) 440, 474
BciT130I CCWGG 2 cut(s) 7, 174
BclI TGATCA 3 cut(s) 370, 868, 1120
BcnI CCSGG 1 cut(s) 477
BcoDI GTCTC 2 cut(s) 129, 155
BcuI ACTAGT 1 cut(s) 767
BfaI CTAG 5 cut(s) 132, 722, 744, 768, 1197
BfmI CTRYAG 1 cut(s) 28
BfoI RGCGCY 1 cut(s) 360
BisI GCNGC 1 cut(s) 759
BlpI GCTNAGC 1 cut(s) 1152
BlsI GCNGC 1 cut(s) 760
BmcAI AGTACT 1 cut(s) 102
Bme1390I CCNGG 3 cut(s) 7, 174, 477
BmiI GGNNCC 1 cut(s) 118
BmrFI CCNGG 3 cut(s) 7, 174, 477
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 3 cut(s) 745, 763, 1098
BmuI ACTGGG 1 cut(s) 173
BpiI GAAGAC 2 cut(s) 684, 999
Bpu10I CCTNAGC 1 cut(s) 981
Bpu1102I GCTNAGC 1 cut(s) 1152
BpuEI CTTGAG 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 477
Bsa29I ATCGAT 2 cut(s) 376, 999
BsaI GGTCTC 1 cut(s) 155
BsaJI CCNNGG 6 cut(s) 6, 74, 110, 173, 549, 1029
BsaWI WCCGGW 1 cut(s) 1076
Bsc4I CCNNNNNNNGG 2 cut(s) 982, 1147
Bse1I ACTGG 3 cut(s) 168, 518, 934
Bse3DI GCAATG 1 cut(s) 505
BseAI TCCGGA 1 cut(s) 1076
BseBI CCWGG 2 cut(s) 7, 174
BseCI ATCGAT 2 cut(s) 376, 999
BseDI CCNNGG 6 cut(s) 6, 74, 110, 173, 549, 1029
BseGI GGATG 4 cut(s) 700, 922, 991, 1113
BseLI CCNNNNNNNGG 2 cut(s) 982, 1147
BseMI GCAATG 1 cut(s) 505
BseMII CTCAG 4 cut(s) 338, 879, 981, 1143
BseNI ACTGG 3 cut(s) 168, 518, 934
BseX3I CGGCCG 1 cut(s) 798
BseXI GCAGC 1 cut(s) 745
Bsh1285I CGRYCG 2 cut(s) 454, 801
BshFI GGCC 2 cut(s) 800, 861
BshVI ATCGAT 2 cut(s) 376, 999
BsiEI CGRYCG 2 cut(s) 454, 801
BsiSI CCGG 2 cut(s) 476, 1077
BslFI GGGAC 1 cut(s) 238
BslI CCNNNNNNNGG 2 cut(s) 982, 1147
BsmAI GTCTC 2 cut(s) 129, 155
BsmFI GGGAC 1 cut(s) 238
BsmI GAATGC 1 cut(s) 1086
BsnI GGCC 2 cut(s) 800, 861
Bso31I GGTCTC 1 cut(s) 155
Bsp13I TCCGGA 1 cut(s) 1076
Bsp143I GATC 7 cut(s) 344, 370, 377, 578, 868, 893, 1120
Bsp1720I GCTNAGC 1 cut(s) 1152
Bsp19I CCATGG 1 cut(s) 74
BspACI CCGC 1 cut(s) 361
BspANI GGCC 2 cut(s) 800, 861
BspCNI CTCAG 4 cut(s) 337, 880, 980, 1144
BspDI ATCGAT 2 cut(s) 376, 999
BspEI TCCGGA 1 cut(s) 1076
BspLI GGNNCC 1 cut(s) 118
BspPI GGATC 3 cut(s) 339, 586, 888
BspQI GCTCTTC 1 cut(s) 1047
BspTNI GGTCTC 1 cut(s) 155
BsrDI GCAATG 1 cut(s) 505
BsrI ACTGG 3 cut(s) 168, 518, 934
BssECI CCNNGG 6 cut(s) 6, 74, 110, 173, 549, 1029
BssMI GATC 7 cut(s) 344, 370, 377, 578, 868, 893, 1120
BssT1I CCWWGG 4 cut(s) 74, 110, 549, 1029
Bst2UI CCWGG 2 cut(s) 7, 174
Bst4CI ACNGT 2 cut(s) 455, 831
Bst6I CTCTTC 4 cut(s) 6, 549, 586, 1047
BstAPI GCANNNNNTGC 1 cut(s) 521
BstC8I GCNNGC 1 cut(s) 361
BstDEI CTNAG 6 cut(s) 69, 324, 888, 967, 981, 1152
BstDSI CCRYGG 1 cut(s) 74
BstENI CCTNNNNNAGG 1 cut(s) 980
BstF5I GGATG 4 cut(s) 700, 922, 991, 1113
BstH2I RGCGCY 1 cut(s) 360
BstHHI GCGC 2 cut(s) 301, 359
BstKTI GATC 7 cut(s) 347, 373, 380, 581, 871, 896, 1123
BstMAI GTCTC 2 cut(s) 129, 155
BstMBI GATC 7 cut(s) 344, 370, 377, 578, 868, 893, 1120
BstMCI CGRYCG 2 cut(s) 454, 801
BstMWI GCNNNNNNNGC 3 cut(s) 521, 968, 977
BstNI CCWGG 2 cut(s) 7, 174
BstSCI CCNGG 3 cut(s) 5, 172, 475
BstSFI CTRYAG 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 745
BstV2I GAAGAC 2 cut(s) 684, 999
BstX2I RGATCY 2 cut(s) 344, 893
BstXI CCANNNNNNTGG 1 cut(s) 667
BstYI RGATCY 2 cut(s) 344, 893
BstZI CGGCCG 1 cut(s) 798
Bsu15I ATCGAT 2 cut(s) 376, 999
BsuRI GGCC 2 cut(s) 800, 861
BsuTUI ATCGAT 2 cut(s) 376, 999
BtgI CCRYGG 1 cut(s) 74
BtsCI GGATG 4 cut(s) 700, 922, 991, 1113
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 2 cut(s) 161, 294
Cac8I GCNNGC 1 cut(s) 361
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 2 cut(s) 301, 359
ClaI ATCGAT 2 cut(s) 376, 999
Csp6I GTAC 3 cut(s) 101, 159, 1004
CspCI CAANNNNNGTGG 2 cut(s) 383, 418
CviAII CATG 5 cut(s) 75, 273, 739, 848, 898
CviQI GTAC 3 cut(s) 101, 159, 1004
DdeI CTNAG 6 cut(s) 69, 324, 888, 967, 981, 1152
DpnI GATC 7 cut(s) 346, 372, 379, 580, 870, 895, 1122
DpnII GATC 7 cut(s) 344, 370, 377, 578, 868, 893, 1120
EaeI YGGCCR 2 cut(s) 798, 859
EagI CGGCCG 1 cut(s) 798
Eam1104I CTCTTC 4 cut(s) 6, 549, 586, 1047
EarI CTCTTC 4 cut(s) 6, 549, 586, 1047
EclXI CGGCCG 1 cut(s) 798
Eco130I CCWWGG 4 cut(s) 74, 110, 549, 1029
Eco31I GGTCTC 1 cut(s) 155
Eco52I CGGCCG 1 cut(s) 798
Eco57I CTGAAG 1 cut(s) 1122
EcoNI CCTNNNNNAGG 1 cut(s) 980
EcoRII CCWGG 2 cut(s) 5, 172
EcoT14I CCWWGG 4 cut(s) 74, 110, 549, 1029
ErhI CCWWGG 4 cut(s) 74, 110, 549, 1029
FaeI CATG 5 cut(s) 78, 276, 742, 851, 901
FaqI GGGAC 1 cut(s) 238
FatI CATG 5 cut(s) 74, 272, 738, 847, 897
FauI CCCGC 1 cut(s) 368
FauNDI CATATG 1 cut(s) 23
FbaI TGATCA 3 cut(s) 370, 868, 1120
Fnu4HI GCNGC 1 cut(s) 759
FokI GGATG 4 cut(s) 707, 929, 998, 1120
Fsp4HI GCNGC 1 cut(s) 759
FspBI CTAG 5 cut(s) 132, 722, 744, 768, 1197
FspI TGCGCA 1 cut(s) 300
GlaI GCGC 2 cut(s) 300, 358
GluI GCNGC 1 cut(s) 759
HaeII RGCGCY 1 cut(s) 360
HaeIII GGCC 2 cut(s) 800, 861
HapII CCGG 2 cut(s) 476, 1077
HhaI GCGC 2 cut(s) 301, 359
Hin1II CATG 5 cut(s) 78, 276, 742, 851, 901
Hin6I GCGC 2 cut(s) 299, 357
HinP1I GCGC 2 cut(s) 299, 357
HincII GTYRAC 1 cut(s) 408
HindII GTYRAC 1 cut(s) 408
HindIII AAGCTT 1 cut(s) 396
HinfI GANTC 3 cut(s) 259, 794, 1010
HpaII CCGG 2 cut(s) 476, 1077
HphI GGTGA 2 cut(s) 938, 1174
Hpy166II GTNNAC 4 cut(s) 161, 288, 408, 444
Hpy188I TCNGA 4 cut(s) 126, 349, 657, 835
Hpy188III TCNNGA 6 cut(s) 132, 588, 744, 887, 1014, 1077
Hpy8I GTNNAC 4 cut(s) 161, 288, 408, 444
Hpy99I CGWCG 1 cut(s) 1150
HpyAV CCTTC 7 cut(s) 54, 200, 250, 604, 803, 1077, 1097
HpyCH4III ACNGT 2 cut(s) 455, 831
HpyCH4V TGCA 2 cut(s) 56, 880
HpyF10VI GCNNNNNNNGC 3 cut(s) 521, 968, 977
HpyF3I CTNAG 6 cut(s) 69, 324, 888, 967, 981, 1152
Hsp92II CATG 5 cut(s) 78, 276, 742, 851, 901
HspAI GCGC 2 cut(s) 299, 357
Kpn2I TCCGGA 1 cut(s) 1076
Ksp22I TGATCA 3 cut(s) 370, 868, 1120
Kzo9I GATC 7 cut(s) 344, 370, 377, 578, 868, 893, 1120
LguI GCTCTTC 1 cut(s) 1047
Lsp1109I GCAGC 1 cut(s) 745
LweI GCATC 3 cut(s) 745, 763, 1098
MaeI CTAG 5 cut(s) 132, 722, 744, 768, 1197
MaeIII GTNAC 2 cut(s) 646, 1166
MalI GATC 7 cut(s) 346, 372, 379, 580, 870, 895, 1122
MboI GATC 7 cut(s) 344, 370, 377, 578, 868, 893, 1120
MboII GAAGA 9 cut(s) 23, 261, 520, 566, 603, 679, 689, 1004, 1034
MflI RGATCY 2 cut(s) 344, 893
MlsI TGGCCA 1 cut(s) 861
MluCI AATT 3 cut(s) 542, 906, 1034
MluNI TGGCCA 1 cut(s) 861
MlyI GAGTC 1 cut(s) 788
MmeI TCCRAC 2 cut(s) 372, 680
MnlI CCTC 8 cut(s) 272, 427, 685, 787, 894, 1099, 1104, 1122
Mox20I TGGCCA 1 cut(s) 861
MroI TCCGGA 1 cut(s) 1076
MroXI GAANNNNTTC 1 cut(s) 1021
MscI TGGCCA 1 cut(s) 861
MseI TTAA 1 cut(s) 180
Msp20I TGGCCA 1 cut(s) 861
MspI CCGG 2 cut(s) 476, 1077
MspR9I CCNGG 3 cut(s) 7, 174, 477
Mva1269I GAATGC 1 cut(s) 1086
MvaI CCWGG 2 cut(s) 7, 174
MwoI GCNNNNNNNGC 3 cut(s) 521, 968, 977
NciI CCSGG 1 cut(s) 477
NcoI CCATGG 1 cut(s) 74
NdeI CATATG 1 cut(s) 23
NdeII GATC 7 cut(s) 344, 370, 377, 578, 868, 893, 1120
NlaIII CATG 5 cut(s) 78, 276, 742, 851, 901
NlaIV GGNNCC 1 cut(s) 118
NmeAIII GCCGAG 1 cut(s) 776
NmuCI GTSAC 2 cut(s) 646, 1166
NsbI TGCGCA 1 cut(s) 300
PciSI GCTCTTC 1 cut(s) 1047
PcsI WCGNNNNNNNCGW 1 cut(s) 1012
PctI GAATGC 1 cut(s) 1086
PdmI GAANNNNTTC 1 cut(s) 1021
PfeI GAWTC 2 cut(s) 259, 1010
PkrI GCNGC 1 cut(s) 760
PleI GAGTC 1 cut(s) 788
PpsI GAGTC 1 cut(s) 788
Psp6I CCWGG 2 cut(s) 5, 172
PspGI CCWGG 2 cut(s) 5, 172
PspN4I GGNNCC 1 cut(s) 118
PstNI CAGNNNCTG 1 cut(s) 296
PsuI RGATCY 2 cut(s) 344, 893
RsaI GTAC 3 cut(s) 102, 160, 1005
RsaNI GTAC 3 cut(s) 101, 159, 1004
SapI GCTCTTC 1 cut(s) 1047
SaqAI TTAA 1 cut(s) 180
SatI GCNGC 1 cut(s) 759
Sau3AI GATC 7 cut(s) 344, 370, 377, 578, 868, 893, 1120
ScaI AGTACT 1 cut(s) 102
SchI GAGTC 1 cut(s) 788
ScrFI CCNGG 3 cut(s) 7, 174, 477
SfaNI GCATC 3 cut(s) 745, 763, 1098
SfcI CTRYAG 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 152
SmoI CTYRAG 1 cut(s) 152
SpeI ACTAGT 1 cut(s) 767
Sse9I AATT 3 cut(s) 542, 906, 1034
SsiI CCGC 1 cut(s) 361
SspMI CTAG 5 cut(s) 132, 722, 744, 768, 1197
StyD4I CCNGG 3 cut(s) 5, 172, 475
StyI CCWWGG 4 cut(s) 74, 110, 549, 1029
TaaI ACNGT 2 cut(s) 455, 831
TaqI TCGA 7 cut(s) 376, 530, 690, 948, 999, 1015, 1114
TaqII GACCGA 1 cut(s) 634
TasI AATT 3 cut(s) 542, 906, 1034
TatI WGTACW 1 cut(s) 100
TfiI GAWTC 2 cut(s) 259, 1010
Tru1I TTAA 1 cut(s) 180
Tru9I TTAA 1 cut(s) 180
TscAI CASTG 2 cut(s) 168, 301
TseFI GTSAC 2 cut(s) 646, 1166
TseI GCWGC 1 cut(s) 758
Tsp45I GTSAC 2 cut(s) 646, 1166
TspDTI ATGAA 3 cut(s) 211, 261, 837
TspGWI ACGGA 1 cut(s) 806
TspRI CASTG 2 cut(s) 168, 301
XagI CCTNNNNNAGG 1 cut(s) 980
XbaI TCTAGA 2 cut(s) 131, 743
XmnI GAANNNNTTC 1 cut(s) 1021
XspI CTAG 5 cut(s) 132, 722, 744, 768, 1197
ZrmI AGTACT 1 cut(s) 102
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.