Rh4AG174000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0000063
Physical Location & Seq
Forward (+)
43593947 .. 43634203
40257 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG174000.1

Sequence Viewer

Length: 1164 bp
ATGGAGGATGACCAGAATGCTTCAAACGAACAACAGAATGTGTCTGAAAATGAGGATGTGTCTGGTATTGGTGAGGGGTCAACCGATGGCATGGAGTTGGCTGACAGCGAAAGTTTTTTTGAAGAAAATCCCTTAGAGAACGATGAGTATGAGAGAGATGGCCGTATTGATCACTCTTTGCCTCCTCTTGAGAGCTCCCTGGTTGAAATTGACATGGACGATTTGGGTGAGACTCAACTCCCTATTGTTTCTTGCATCGGCCAACAACTCGCCAACTCTGCCCAGGATGCTGAAGGTACCGGTGCAGTTAGTCGAGAAGTGTTGCCTAACCTCCAAACACTTGTCCAGGTAGGAGAATTTCAAAGTAGTATGACTTTGGAGCTCACTCTTCTCAACCAAAATGAAGCACACCCTCCTCTGTTTGGTATACTTACTTCTCCTCCAACCGAAGGAATGTCCCACAGTGAGCAAGCTGTCGTTTGCGCTCCAACCTCAGCCGAACTTATGGACTGTACTGCGGGCGATCTCGGTTTAGAGCTACTTCATTTCCTAGATACTCTAGATAACACCGCGAGCCCCATAGAGGAAAAACTCGAGACAGCAGAAACTAAAAAGGCACTTGAGACGTTCATTGATCTTCCTGATAATCCTGCTGCTGCTGTTGGATTTCAGTTCAATCTTACTGCAAGGAGTCATGCTAATAAAAGACATCTGAGTTTTGTTAGTGGAACCCTAAAGAATGGAAGTACTTTGGATGATAGACCAGTTACATTCAGAGGGAGTAATACAAATATATTGAAATTCAGTTTATTTCCGCGGATATTCCATAATCTACATGATCTAAGGCTCATCCAACCTTTGTTTCATGCGTTTGTACTGGGTTCATTCTTTAATGACACAAGTCAGCTCCAAGCATCCCTTCAAAGGCCTAAGGATGGAATACTTAACACCACATTGTACATCAACTTCCTCTCTGACTACATTGTGGAGATAGATAAGCAAAATATTATGGGTCCTGAACTGATATGCATTAAAAGCCCAAATAGCAAAAGAGGCAACAAACGGGCAGCCCAGCCCACAAAGCAAAGAAGAATTCTCATGAAAGTGCAGCCAGCGAACAAAAACCCAGCTGGCCAGGAACCTCAGATGGTCCGAGTCCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

387

Amino Acids

42.66

Weight (kDa)

4.62

Isoelectric Point (pI)

47.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 296
AccB1I GGYRCC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 427
AccII CGCG 2 cut(s) 572, 817
AciI CCGC 4 cut(s) 518, 570, 815, 817
AcoI YGGCCR 3 cut(s) 160, 259, 1132
AcsI RAATTY 3 cut(s) 356, 800, 1092
AcuI CTGAAG 1 cut(s) 312
AfaI GTAC 5 cut(s) 298, 514, 748, 876, 959
AfiI CCNNNNNNNGG 5 cut(s) 422, 449, 583, 924, 935
AgeI ACCGGT 1 cut(s) 299
AgsI TTSAA 7 cut(s) 24, 122, 206, 362, 676, 799, 923
AjnI CCWGG 4 cut(s) 198, 282, 345, 1134
AjuI GAANNNNNNNTTGG 4 cut(s) 846, 878, 903, 935
AluBI AGCT 6 cut(s) 195, 382, 473, 538, 907, 1130
AluI AGCT 6 cut(s) 195, 382, 473, 538, 907, 1130
Alw21I GWGCWC 2 cut(s) 197, 384
Alw26I GTCTC 3 cut(s) 224, 590, 617
Ama87I CYCGRG 1 cut(s) 593
AoxI GGCC 4 cut(s) 160, 259, 926, 1132
ApeKI GCWGC 4 cut(s) 653, 656, 1067, 1108
ApoI RAATTY 3 cut(s) 356, 800, 1092
AsiGI ACCGGT 1 cut(s) 299
Asp718I GGTACC 1 cut(s) 296
AspLEI GCGC 1 cut(s) 485
AspS9I GGNCC 2 cut(s) 1013, 1150
AsuHPI GGTGA 2 cut(s) 83, 239
AvaI CYCGRG 1 cut(s) 593
AvaII GGWCC 2 cut(s) 1013, 1150
AxyI CCTNAGG 1 cut(s) 930
BalI TGGCCA 1 cut(s) 1134
BanI GGYRCC 1 cut(s) 296
BanII GRGCYC 3 cut(s) 197, 384, 578
BarI GAAGNNNNNNTAC 4 cut(s) 418, 450, 950, 982
Bbv12I GWGCWC 2 cut(s) 197, 384
BbvCI CCTCAGC 1 cut(s) 493
BbvI GCAGC 4 cut(s) 640, 643, 1079, 1120
BccI CCATC 4 cut(s) 80, 152, 929, 1141
BceAI ACGGC 1 cut(s) 147
BciT130I CCWGG 4 cut(s) 200, 284, 347, 1136
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 3 cut(s) 224, 590, 617
BfaI CTAG 3 cut(s) 551, 560, 1162
BisI GCNGC 4 cut(s) 654, 657, 1068, 1109
BlsI GCNGC 4 cut(s) 655, 658, 1069, 1110
BmcAI AGTACT 1 cut(s) 748
Bme1390I CCNGG 4 cut(s) 200, 284, 347, 1136
Bme18I GGWCC 2 cut(s) 1013, 1150
BmeT110I CYCGRG 1 cut(s) 593
BmgT120I GGNCC 2 cut(s) 1013, 1150
BmiI GGNNCC 4 cut(s) 298, 730, 1014, 1140
BmrFI CCNGG 4 cut(s) 200, 284, 347, 1136
BmrI ACTGGG 1 cut(s) 887
BmsI GCATC 3 cut(s) 264, 277, 923
BmuI ACTGGG 1 cut(s) 887
BoxI GACNNNNGTC 1 cut(s) 900
Bpu10I CCTNAGC 1 cut(s) 493
BpuEI CTTGAG 2 cut(s) 209, 641
BsaJI CCNNGG 3 cut(s) 198, 282, 815
BsaWI WCCGGW 1 cut(s) 299
BsaXI ACNNNNNCTCC 2 cut(s) 424, 454
Bsc4I CCNNNNNNNGG 5 cut(s) 422, 449, 583, 924, 935
Bse118I RCCGGY 1 cut(s) 299
Bse1I ACTGG 2 cut(s) 764, 882
Bse21I CCTNAGG 1 cut(s) 930
BseBI CCWGG 4 cut(s) 200, 284, 347, 1136
BseDI CCNNGG 3 cut(s) 198, 282, 815
BseGI GGATG 7 cut(s) 13, 61, 292, 760, 849, 914, 940
BseLI CCNNNNNNNGG 5 cut(s) 422, 449, 583, 924, 935
BseMII CTCAG 3 cut(s) 507, 704, 1157
BseNI ACTGG 2 cut(s) 764, 882
BseRI GAGGAG 3 cut(s) 174, 405, 429
BseXI GCAGC 4 cut(s) 640, 643, 1079, 1120
BseYI CCCAGC 2 cut(s) 1071, 1126
BsgI GTGCAG 2 cut(s) 324, 1127
Bsh1236I CGCG 2 cut(s) 572, 817
BshFI GGCC 4 cut(s) 162, 261, 928, 1134
BshNI GGYRCC 1 cut(s) 296
BshTI ACCGGT 1 cut(s) 299
BsiHKAI GWGCWC 2 cut(s) 197, 384
BsiHKCI CYCGRG 1 cut(s) 593
BsiSI CCGG 1 cut(s) 300
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 5 cut(s) 422, 449, 583, 924, 935
BsmAI GTCTC 3 cut(s) 224, 590, 617
BsmBI CGTCTC 1 cut(s) 617
BsmFI GGGAC 1 cut(s) 442
BsmI GAATGC 1 cut(s) 22
BsnI GGCC 4 cut(s) 162, 261, 928, 1134
BsoBI CYCGRG 1 cut(s) 593
Bsp1286I GDGCHC 3 cut(s) 197, 384, 578
Bsp1407I TGTACA 1 cut(s) 957
Bsp143I GATC 4 cut(s) 169, 523, 634, 838
BspACI CCGC 4 cut(s) 518, 570, 815, 817
BspANI GGCC 4 cut(s) 162, 261, 928, 1134
BspCNI CTCAG 3 cut(s) 506, 705, 1156
BspFNI CGCG 2 cut(s) 572, 817
BspHI TCATGA 1 cut(s) 1098
BspLI GGNNCC 4 cut(s) 298, 730, 1014, 1140
BspT107I GGYRCC 1 cut(s) 296
BsrFI RCCGGY 1 cut(s) 299
BsrGI TGTACA 1 cut(s) 957
BsrI ACTGG 2 cut(s) 764, 882
BssAI RCCGGY 1 cut(s) 299
BssECI CCNNGG 3 cut(s) 198, 282, 815
BssMI GATC 4 cut(s) 169, 523, 634, 838
BssNAI GTATAC 1 cut(s) 428
Bst1107I GTATAC 1 cut(s) 428
Bst2UI CCWGG 4 cut(s) 200, 284, 347, 1136
Bst4CI ACNGT 2 cut(s) 464, 512
Bst6I CTCTTC 1 cut(s) 393
BstAUI TGTACA 1 cut(s) 957
BstC8I GCNNGC 5 cut(s) 471, 520, 574, 1113, 1132
BstDEI CTNAG 6 cut(s) 133, 493, 713, 842, 930, 1143
BstDSI CCRYGG 1 cut(s) 815
BstF5I GGATG 7 cut(s) 13, 61, 292, 760, 849, 914, 940
BstFNI CGCG 2 cut(s) 572, 817
BstHHI GCGC 1 cut(s) 485
BstKTI GATC 4 cut(s) 172, 526, 637, 841
BstMAI GTCTC 3 cut(s) 224, 590, 617
BstMBI GATC 4 cut(s) 169, 523, 634, 838
BstMWI GCNNNNNNNGC 6 cut(s) 278, 287, 1035, 1044, 1053, 1081
BstNI CCWGG 4 cut(s) 200, 284, 347, 1136
BstPAI GACNNNNGTC 1 cut(s) 900
BstSCI CCNGG 4 cut(s) 198, 282, 345, 1134
BstUI CGCG 2 cut(s) 572, 817
BstV1I GCAGC 4 cut(s) 640, 643, 1079, 1120
BstZ17I GTATAC 1 cut(s) 428
Bsu36I CCTNAGG 1 cut(s) 930
BsuRI GGCC 4 cut(s) 162, 261, 928, 1134
BtgI CCRYGG 1 cut(s) 815
BtsCI GGATG 7 cut(s) 13, 61, 292, 760, 849, 914, 940
BtsIMutI CAGTG 1 cut(s) 469
Cac8I GCNNGC 5 cut(s) 471, 520, 574, 1113, 1132
CciI TCATGA 1 cut(s) 1098
CfoI GCGC 1 cut(s) 485
Cfr10I RCCGGY 1 cut(s) 299
Cfr13I GGNCC 2 cut(s) 1013, 1150
Cfr42I CCGCGG 1 cut(s) 818
Csp6I GTAC 5 cut(s) 297, 513, 747, 875, 958
CspAI ACCGGT 1 cut(s) 299
CviAII CATG 6 cut(s) 91, 214, 695, 836, 866, 1099
CviQI GTAC 5 cut(s) 297, 513, 747, 875, 958
DdeI CTNAG 6 cut(s) 133, 493, 713, 842, 930, 1143
DpnI GATC 4 cut(s) 171, 525, 636, 840
DpnII GATC 4 cut(s) 169, 523, 634, 838
EaeI YGGCCR 3 cut(s) 160, 259, 1132
Eam1104I CTCTTC 1 cut(s) 393
EarI CTCTTC 1 cut(s) 393
Ecl136II GAGCTC 2 cut(s) 195, 382
Eco147I AGGCCT 1 cut(s) 928
Eco24I GRGCYC 3 cut(s) 197, 384, 578
Eco47I GGWCC 2 cut(s) 1013, 1150
Eco53kI GAGCTC 2 cut(s) 195, 382
Eco57I CTGAAG 1 cut(s) 312
Eco81I CCTNAGG 1 cut(s) 930
Eco88I CYCGRG 1 cut(s) 593
EcoICRI GAGCTC 2 cut(s) 195, 382
EcoO109I RGGNCCY 1 cut(s) 1013
EcoRI GAATTC 1 cut(s) 1092
EcoRII CCWGG 4 cut(s) 198, 282, 345, 1134
EcoT22I ATGCAT 1 cut(s) 1031
EcoT38I GRGCYC 3 cut(s) 197, 384, 578
Esp3I CGTCTC 1 cut(s) 617
FaeI CATG 6 cut(s) 94, 217, 698, 839, 869, 1102
FalI AAGNNNNNCTT 2 cut(s) 903, 935
FaqI GGGAC 1 cut(s) 442
FatI CATG 6 cut(s) 90, 213, 694, 835, 865, 1098
FauI CCCGC 1 cut(s) 511
FbaI TGATCA 1 cut(s) 169
FblI GTMKAC 1 cut(s) 427
Fnu4HI GCNGC 4 cut(s) 654, 657, 1068, 1109
FokI GGATG 7 cut(s) 20, 68, 299, 767, 836, 901, 947
FriOI GRGCYC 3 cut(s) 197, 384, 578
Fsp4HI GCNGC 4 cut(s) 654, 657, 1068, 1109
FspBI CTAG 3 cut(s) 551, 560, 1162
GlaI GCGC 1 cut(s) 484
GluI GCNGC 4 cut(s) 654, 657, 1068, 1109
GsaI CCCAGC 2 cut(s) 1075, 1130
HaeIII GGCC 4 cut(s) 162, 261, 928, 1134
HapII CCGG 1 cut(s) 300
HhaI GCGC 1 cut(s) 485
Hin1II CATG 6 cut(s) 94, 217, 698, 839, 869, 1102
Hin6I GCGC 1 cut(s) 483
HinP1I GCGC 1 cut(s) 483
HincII GTYRAC 1 cut(s) 81
HindII GTYRAC 1 cut(s) 81
HinfI GANTC 3 cut(s) 232, 691, 1155
HpaII CCGG 1 cut(s) 300
HphI GGTGA 2 cut(s) 83, 239
Hpy166II GTNNAC 3 cut(s) 81, 428, 1159
Hpy188I TCNGA 6 cut(s) 46, 714, 776, 976, 1146, 1154
Hpy188III TCNNGA 7 cut(s) 188, 314, 560, 595, 641, 1016, 1099
Hpy8I GTNNAC 3 cut(s) 81, 428, 1159
HpyAV CCTTC 3 cut(s) 287, 443, 929
HpyCH4III ACNGT 2 cut(s) 464, 512
HpyCH4IV ACGT 1 cut(s) 626
HpyCH4V TGCA 5 cut(s) 255, 305, 686, 1029, 1108
HpyF10VI GCNNNNNNNGC 6 cut(s) 278, 287, 1035, 1044, 1053, 1081
HpyF3I CTNAG 6 cut(s) 133, 493, 713, 842, 930, 1143
HpySE526I ACGT 1 cut(s) 626
Hsp92II CATG 6 cut(s) 94, 217, 698, 839, 869, 1102
HspAI GCGC 1 cut(s) 483
KpnI GGTACC 1 cut(s) 300
Ksp22I TGATCA 1 cut(s) 169
KspI CCGCGG 1 cut(s) 818
Kzo9I GATC 4 cut(s) 169, 523, 634, 838
LmnI GCTCC 4 cut(s) 200, 379, 490, 912
Lsp1109I GCAGC 4 cut(s) 640, 643, 1079, 1120
LweI GCATC 3 cut(s) 264, 277, 923
MaeI CTAG 3 cut(s) 551, 560, 1162
MaeII ACGT 1 cut(s) 626
MaeIII GTNAC 1 cut(s) 766
MalI GATC 4 cut(s) 171, 525, 636, 840
MboI GATC 4 cut(s) 169, 523, 634, 838
MboII GAAGA 4 cut(s) 134, 380, 629, 1101
MhlI GDGCHC 3 cut(s) 197, 384, 578
MlsI TGGCCA 1 cut(s) 1134
MluCI AATT 4 cut(s) 207, 356, 800, 1092
MluNI TGGCCA 1 cut(s) 1134
MlyI GAGTC 3 cut(s) 226, 700, 1164
MmeI TCCRAC 4 cut(s) 467, 512, 643, 877
Mox20I TGGCCA 1 cut(s) 1134
Mph1103I ATGCAT 1 cut(s) 1031
MscI TGGCCA 1 cut(s) 1134
MseI TTAA 3 cut(s) 891, 945, 1032
MslI CAYNNNNRTG 1 cut(s) 1103
Msp20I TGGCCA 1 cut(s) 1134
MspA1I CMGCKG 2 cut(s) 817, 1130
MspI CCGG 1 cut(s) 300
MspR9I CCNGG 4 cut(s) 200, 284, 347, 1136
Mva1269I GAATGC 1 cut(s) 22
MvaI CCWGG 4 cut(s) 200, 284, 347, 1136
MvnI CGCG 2 cut(s) 572, 817
MwoI GCNNNNNNNGC 6 cut(s) 278, 287, 1035, 1044, 1053, 1081
NdeII GATC 4 cut(s) 169, 523, 634, 838
NlaIII CATG 6 cut(s) 94, 217, 698, 839, 869, 1102
NlaIV GGNNCC 4 cut(s) 298, 730, 1014, 1140
NsiI ATGCAT 1 cut(s) 1031
PaeR7I CTCGAG 1 cut(s) 593
PagI TCATGA 1 cut(s) 1098
PceI AGGCCT 1 cut(s) 928
PctI GAATGC 1 cut(s) 22
PinAI ACCGGT 1 cut(s) 299
PkrI GCNGC 4 cut(s) 655, 658, 1069, 1110
PleI GAGTC 3 cut(s) 226, 699, 1163
PpsI GAGTC 3 cut(s) 226, 699, 1163
PpuMI RGGWCCY 1 cut(s) 1013
PshAI GACNNNNGTC 1 cut(s) 900
Psp124BI GAGCTC 2 cut(s) 197, 384
Psp5II RGGWCCY 1 cut(s) 1013
Psp6I CCWGG 4 cut(s) 198, 282, 345, 1134
PspFI CCCAGC 2 cut(s) 1071, 1126
PspGI CCWGG 4 cut(s) 198, 282, 345, 1134
PspN4I GGNNCC 4 cut(s) 298, 730, 1014, 1140
PspPI GGNCC 2 cut(s) 1013, 1150
PspPPI RGGWCCY 1 cut(s) 1013
PvuII CAGCTG 1 cut(s) 1130
RsaI GTAC 5 cut(s) 298, 514, 748, 876, 959
RsaNI GTAC 5 cut(s) 297, 513, 747, 875, 958
RseI CAYNNNNRTG 1 cut(s) 1103
SacI GAGCTC 2 cut(s) 197, 384
SacII CCGCGG 1 cut(s) 818
SaqAI TTAA 3 cut(s) 891, 945, 1032
SatI GCNGC 4 cut(s) 654, 657, 1068, 1109
Sau3AI GATC 4 cut(s) 169, 523, 634, 838
Sau96I GGNCC 2 cut(s) 1013, 1150
ScaI AGTACT 1 cut(s) 748
SchI GAGTC 3 cut(s) 226, 700, 1164
ScrFI CCNGG 4 cut(s) 200, 284, 347, 1136
SduI GDGCHC 3 cut(s) 197, 384, 578
SfaNI GCATC 3 cut(s) 264, 277, 923
Sfr274I CTCGAG 1 cut(s) 593
Sfr303I CCGCGG 1 cut(s) 818
SgrBI CCGCGG 1 cut(s) 818
SinI GGWCC 2 cut(s) 1013, 1150
SlaI CTCGAG 1 cut(s) 593
SmiMI CAYNNNNRTG 1 cut(s) 1103
SmlI CTYRAG 3 cut(s) 188, 593, 620
SmoI CTYRAG 3 cut(s) 188, 593, 620
Sse9I AATT 4 cut(s) 207, 356, 800, 1092
SseBI AGGCCT 1 cut(s) 928
SsiI CCGC 4 cut(s) 518, 570, 815, 817
SspI AATATT 1 cut(s) 1006
SspMI CTAG 3 cut(s) 551, 560, 1162
SstI GAGCTC 2 cut(s) 197, 384
StuI AGGCCT 1 cut(s) 928
StyD4I CCNGG 4 cut(s) 198, 282, 345, 1134
TaaI ACNGT 2 cut(s) 464, 512
TaiI ACGT 1 cut(s) 629
TaqI TCGA 2 cut(s) 313, 594
TasI AATT 4 cut(s) 207, 356, 800, 1092
TatI WGTACW 4 cut(s) 512, 746, 874, 957
Tru1I TTAA 3 cut(s) 891, 945, 1032
Tru9I TTAA 3 cut(s) 891, 945, 1032
TscAI CASTG 1 cut(s) 469
TseI GCWGC 4 cut(s) 653, 656, 1067, 1108
TspDTI ATGAA 6 cut(s) 417, 533, 619, 854, 873, 1115
TspRI CASTG 1 cut(s) 469
VpaK11BI GGWCC 2 cut(s) 1013, 1150
XapI RAATTY 3 cut(s) 356, 800, 1092
XbaI TCTAGA 1 cut(s) 559
XhoI CTCGAG 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 427
XspI CTAG 3 cut(s) 551, 560, 1162
ZrmI AGTACT 1 cut(s) 748
Zsp2I ATGCAT 1 cut(s) 1031
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.