Rmu_sc0003773.1_g000008

Cyclic nucleotide-gated ion channel 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003773.1
OG0000063
Physical Location & Seq
Forward (+)
35661 .. 37987
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003773.1_g000008.1.cds

Sequence Viewer

Length: 1566 bp
atgcaaatacgtgttttgcattatccttcttgtcttgcattaaacataacgaaaccatgggagaggtctttggacttgtcagtacttctaccttgggggagcattctgatttctcgagacataaactatggtctcaagggaacactgggtcggccaggggttgaggtttatcttccaaactttgttgcgcgtcatcttggcttcatacaaagctgtccagccttctttctaatttcccagaatcgtttttcttcatggagagatgggtttacagacactgcgcattgttcggccgtcactctttattatcagactcattttggcaattttgagagatccggcctgagcgcccgcgaacctgatcatagagcaactctgactttccaagcttggtggtcaacatttatcaagaagaaacttggagaggacttgcggacaaccgagtgtattgccttgtatggattcccgggcttgttcaccaacaagggaaatggcaagaaaaaagcaccgattgccaagtcgaaatccaaagaaatgtccaaggaagagcaaacctcaaagaaacgaggaccaaagtcgggaagagctctgcctaccaagaaggtaaagaagtcacttgacgtggtggagagtttggtcacgaatccggctgacattatggttagtgaagacataattttcaagggtgatatggataatagccaaaatgctctagctgaaaatcacatcatgtctggagctgaggatgctaccgaaactagtgatgcctcaaacaacaacacgggctcggccgacagcgaaggtacgcctgatgaagcacagtcagaaaactttgagcatgagagagatggccgcattgatcattcttcgcatcctcctgaaagctccatggttgaaattgacatagatgacttgggtgagaaccagcttcctaatatcgaccaaccactcgcaaactcagctaaccttgctaaggatgcggaggacaatggtgtacgaggaactcaaagcaattcaaccttggagttggttcttctcaatccaactgaaccaaatccttctatgtccggaatgcttacctcccctcttactgaagggatgcctcgaaatgatcaagctatcgtttgcgccccatcgtcggctaagcctgtggatcaaacaacaagcgatcttggtctggagttacttcaatttctcgatacgctagacaacaacacgagcccggtggaggaaaaccttgaaacaaccgaaaccaagaaggcacttgaatcgtctaccgatcttggccaacttcataagttgaagacttctttggatgagggaaggcaaaaagtgcgtgatttgaaaaagcaattggtcgaagctgaagagcaagtcaaaatcacttcggcctccatccgaaccattgttcctcaacaagatctcactaggtatagcttgattttgtcatcggtcaagtcgtacaacaagaagaaatgcatcttgaagcgaaatgtcgaccaaggtatggaagacttggaaaaggttaaggaagttcttcggtcccttctaccctctgacatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04626 map04626
Pfam Domains
Protein Families
Ion_trans Pkinase cNMP_binding

Protein Analysis

521

Amino Acids

57.67

Weight (kDa)

5.42

Isoelectric Point (pI)

43.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 282
AccB7I CCANNNNNTGG 1 cut(s) 1507
AccI GTMKAC 2 cut(s) 1274, 1497
AccII CGCG 2 cut(s) 190, 354
AccIII TCCGGA 1 cut(s) 1067
AciI CCGC 4 cut(s) 352, 433, 853, 980
AclWI GGATC 2 cut(s) 330, 1161
AcoI YGGCCR 5 cut(s) 152, 291, 789, 850, 1285
AcuI CTGAAG 2 cut(s) 1113, 1386
AfaI GTAC 4 cut(s) 84, 805, 996, 1463
AfiI CCNNNNNNNGG 5 cut(s) 578, 973, 1138, 1228, 1507
AflIII ACRYGT 2 cut(s) 10, 1560
AgsI TTSAA 9 cut(s) 682, 896, 1017, 1190, 1241, 1268, 1303, 1345, 1486
AhlI ACTAGT 1 cut(s) 758
AjiI CACGTC 1 cut(s) 622
AjnI CCWGG 1 cut(s) 154
AjuI GAANNNNNNNTTGG 4 cut(s) 1295, 1327, 1337, 1369
AloI GAACNNNNNNTCC 2 cut(s) 1393, 1425
Alw21I GWGCWC 1 cut(s) 589
Alw26I GTCTC 2 cut(s) 111, 137
AlwI GGATC 2 cut(s) 330, 1161
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 2 cut(s) 114, 466
Aor13HI TCCGGA 1 cut(s) 1067
AoxI GGCC 7 cut(s) 152, 291, 340, 789, 850, 1285, 1389
Asp700I GAANNNNTTC 1 cut(s) 1536
AspLEI GCGC 4 cut(s) 190, 283, 350, 1130
AspS9I GGNCC 2 cut(s) 569, 1542
AsuC2I CCSGG 3 cut(s) 467, 468, 1223
AsuHPI GGTGA 3 cut(s) 469, 698, 929
AvaI CYCGRG 2 cut(s) 114, 466
AvaII GGWCC 2 cut(s) 569, 1542
BalI TGGCCA 1 cut(s) 1287
BanII GRGCYC 3 cut(s) 589, 788, 1223
BauI CACGAG 1 cut(s) 1216
BbsI GAAGAC 3 cut(s) 675, 1310, 1518
Bbv12I GWGCWC 1 cut(s) 589
BbvCI CCTCAGC 1 cut(s) 741
BccI CCATC 4 cut(s) 257, 842, 1141, 1403
BceAI ACGGC 1 cut(s) 278
BcgI CGANNNNNNTGC 4 cut(s) 431, 465, 1251, 1285
BciT130I CCWGG 1 cut(s) 156
BclI TGATCA 3 cut(s) 361, 859, 1111
BcnI CCSGG 3 cut(s) 467, 468, 1223
BcoDI GTCTC 2 cut(s) 111, 137
BcuI ACTAGT 1 cut(s) 758
BfaI CTAG 4 cut(s) 713, 759, 1205, 1428
BfoI RGCGCY 1 cut(s) 351
BglII AGATCT 1 cut(s) 1420
BisI GCNGC 1 cut(s) 853
BlpI GCTNAGC 1 cut(s) 1143
BlsI GCNGC 1 cut(s) 854
BmcAI AGTACT 1 cut(s) 84
Bme1390I CCNGG 4 cut(s) 156, 467, 468, 1223
Bme18I GGWCC 2 cut(s) 569, 1542
BmeT110I CYCGRG 2 cut(s) 114, 466
BmgBI CACGTC 1 cut(s) 622
BmgT120I GGNCC 2 cut(s) 569, 1542
BmiI GGNNCC 1 cut(s) 1544
BmrFI CCNGG 4 cut(s) 156, 467, 468, 1223
BmrI ACTGGG 1 cut(s) 155
BmsI GCATC 6 cut(s) 736, 754, 880, 967, 1089, 1488
BmuI ACTGGG 1 cut(s) 155
BoxI GACNNNNGTC 1 cut(s) 574
BpiI GAAGAC 3 cut(s) 675, 1310, 1518
BplI GAGNNNNNCTC 2 cut(s) 539, 571
BpmI CTGGAG 2 cut(s) 756, 1199
Bpu10I CCTNAGC 3 cut(s) 344, 741, 972
Bpu1102I GCTNAGC 1 cut(s) 1143
BpuEI CTTGAG 1 cut(s) 119
BpuMI CCSGG 3 cut(s) 467, 468, 1223
BsaAI YACGTR 1 cut(s) 11
BsaI GGTCTC 1 cut(s) 137
BsaJI CCNNGG 8 cut(s) 56, 92, 155, 466, 540, 888, 1020, 1501
BsaWI WCCGGW 1 cut(s) 1067
Bsc4I CCNNNNNNNGG 5 cut(s) 578, 973, 1138, 1228, 1507
Bse1I ACTGG 1 cut(s) 150
BseAI TCCGGA 1 cut(s) 1067
BseBI CCWGG 1 cut(s) 156
BseDI CCNNGG 8 cut(s) 56, 92, 155, 466, 540, 888, 1020, 1501
BseGI GGATG 6 cut(s) 751, 871, 982, 1104, 1321, 1395
BseLI CCNNNNNNNGG 5 cut(s) 578, 973, 1138, 1228, 1507
BseMII CTCAG 3 cut(s) 335, 732, 972
BseNI ACTGG 1 cut(s) 150
BseX3I CGGCCG 2 cut(s) 291, 789
Bsh1236I CGCG 2 cut(s) 190, 354
Bsh1285I CGRYCG 2 cut(s) 294, 792
BshFI GGCC 7 cut(s) 154, 293, 342, 791, 852, 1287, 1391
BsiEI CGRYCG 2 cut(s) 294, 792
BsiHKAI GWGCWC 1 cut(s) 589
BsiHKCI CYCGRG 2 cut(s) 114, 466
BsiSI CCGG 5 cut(s) 339, 467, 647, 1068, 1223
BslFI GGGAC 1 cut(s) 1528
BslI CCNNNNNNNGG 5 cut(s) 578, 973, 1138, 1228, 1507
BsmAI GTCTC 2 cut(s) 111, 137
BsmFI GGGAC 1 cut(s) 1528
BsmI GAATGC 2 cut(s) 102, 1077
BsnI GGCC 7 cut(s) 154, 293, 342, 791, 852, 1287, 1391
Bso31I GGTCTC 1 cut(s) 137
BsoBI CYCGRG 2 cut(s) 114, 466
Bsp1286I GDGCHC 3 cut(s) 589, 788, 1223
Bsp13I TCCGGA 1 cut(s) 1067
Bsp143I GATC 8 cut(s) 335, 361, 859, 1111, 1153, 1168, 1279, 1420
Bsp1720I GCTNAGC 1 cut(s) 1143
Bsp19I CCATGG 2 cut(s) 56, 888
BspACI CCGC 4 cut(s) 352, 433, 853, 980
BspANI GGCC 7 cut(s) 154, 293, 342, 791, 852, 1287, 1391
BspCNI CTCAG 3 cut(s) 336, 733, 971
BspEI TCCGGA 1 cut(s) 1067
BspFNI CGCG 2 cut(s) 190, 354
BspLI GGNNCC 1 cut(s) 1544
BspPI GGATC 2 cut(s) 330, 1161
BspQI GCTCTTC 3 cut(s) 540, 577, 1362
BspTNI GGTCTC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 150
BssECI CCNNGG 8 cut(s) 56, 92, 155, 466, 540, 888, 1020, 1501
BssMI GATC 8 cut(s) 335, 361, 859, 1111, 1153, 1168, 1279, 1420
BssSI CACGAG 1 cut(s) 1216
BssT1I CCWWGG 6 cut(s) 56, 92, 540, 888, 1020, 1501
Bst2BI CACGAG 1 cut(s) 1216
Bst2UI CCWGG 1 cut(s) 156
Bst4CI ACNGT 1 cut(s) 822
Bst6I CTCTTC 3 cut(s) 540, 577, 1362
BstAPI GCANNNNNTGC 2 cut(s) 512, 1333
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 5 cut(s) 344, 741, 958, 972, 1143
BstDSI CCRYGG 2 cut(s) 56, 888
BstENI CCTNNNNNAGG 1 cut(s) 971
BstF5I GGATG 6 cut(s) 751, 871, 982, 1104, 1321, 1395
BstFNI CGCG 2 cut(s) 190, 354
BstH2I RGCGCY 1 cut(s) 351
BstHHI GCGC 4 cut(s) 190, 283, 350, 1130
BstKTI GATC 8 cut(s) 338, 364, 862, 1114, 1156, 1171, 1282, 1423
BstMAI GTCTC 2 cut(s) 111, 137
BstMBI GATC 8 cut(s) 335, 361, 859, 1111, 1153, 1168, 1279, 1420
BstMCI CGRYCG 2 cut(s) 294, 792
BstMWI GCNNNNNNNGC 6 cut(s) 512, 746, 959, 968, 977, 1333
BstNI CCWGG 1 cut(s) 156
BstNSI RCATGY 1 cut(s) 1564
BstPAI GACNNNNGTC 1 cut(s) 574
BstSCI CCNGG 4 cut(s) 154, 465, 466, 1221
BstUI CGCG 2 cut(s) 190, 354
BstV2I GAAGAC 3 cut(s) 675, 1310, 1518
BstX2I RGATCY 2 cut(s) 335, 1420
BstYI RGATCY 2 cut(s) 335, 1420
BstZI CGGCCG 2 cut(s) 291, 789
BsuRI GGCC 7 cut(s) 154, 293, 342, 791, 852, 1287, 1391
BtgI CCRYGG 2 cut(s) 56, 888
BtrI CACGTC 1 cut(s) 622
BtsCI GGATG 6 cut(s) 751, 871, 982, 1104, 1321, 1395
BtsI GCAGTG 1 cut(s) 276
BtsIMutI CAGTG 2 cut(s) 143, 276
Cac8I GCNNGC 1 cut(s) 352
CaiI CAGNNNCTG 1 cut(s) 278
CfoI GCGC 4 cut(s) 190, 283, 350, 1130
Cfr13I GGNCC 2 cut(s) 569, 1542
Cfr9I CCCGGG 1 cut(s) 466
CseI GACGC 1 cut(s) 179
Csp6I GTAC 4 cut(s) 83, 804, 995, 1462
CspCI CAANNNNNGTGG 2 cut(s) 374, 409
CviAII CATG 6 cut(s) 57, 255, 730, 839, 889, 1561
CviQI GTAC 4 cut(s) 83, 804, 995, 1462
DdeI CTNAG 5 cut(s) 344, 741, 958, 972, 1143
DpnI GATC 8 cut(s) 337, 363, 861, 1113, 1155, 1170, 1281, 1422
DpnII GATC 8 cut(s) 335, 361, 859, 1111, 1153, 1168, 1279, 1420
EaeI YGGCCR 5 cut(s) 152, 291, 789, 850, 1285
EagI CGGCCG 2 cut(s) 291, 789
Eam1104I CTCTTC 3 cut(s) 540, 577, 1362
EarI CTCTTC 3 cut(s) 540, 577, 1362
Ecl136II GAGCTC 1 cut(s) 587
EclXI CGGCCG 2 cut(s) 291, 789
Eco130I CCWWGG 6 cut(s) 56, 92, 540, 888, 1020, 1501
Eco24I GRGCYC 3 cut(s) 589, 788, 1223
Eco31I GGTCTC 1 cut(s) 137
Eco47I GGWCC 2 cut(s) 569, 1542
Eco52I CGGCCG 2 cut(s) 291, 789
Eco53kI GAGCTC 1 cut(s) 587
Eco57I CTGAAG 2 cut(s) 1113, 1386
Eco88I CYCGRG 2 cut(s) 114, 466
EcoICRI GAGCTC 1 cut(s) 587
EcoNI CCTNNNNNAGG 1 cut(s) 971
EcoRII CCWGG 1 cut(s) 154
EcoT14I CCWWGG 6 cut(s) 56, 92, 540, 888, 1020, 1501
EcoT22I ATGCAT 1 cut(s) 1481
EcoT38I GRGCYC 3 cut(s) 589, 788, 1223
ErhI CCWWGG 6 cut(s) 56, 92, 540, 888, 1020, 1501
FaeI CATG 6 cut(s) 60, 258, 733, 842, 892, 1564
FaqI GGGAC 1 cut(s) 1528
FatI CATG 6 cut(s) 56, 254, 729, 838, 888, 1560
FauI CCCGC 1 cut(s) 359
FbaI TGATCA 3 cut(s) 361, 859, 1111
FblI GTMKAC 2 cut(s) 1274, 1497
Fnu4HI GCNGC 1 cut(s) 853
FokI GGATG 6 cut(s) 758, 858, 989, 1111, 1328, 1382
FriOI GRGCYC 3 cut(s) 589, 788, 1223
Fsp4HI GCNGC 1 cut(s) 853
FspBI CTAG 4 cut(s) 713, 759, 1205, 1428
FspI TGCGCA 1 cut(s) 282
GlaI GCGC 4 cut(s) 189, 282, 349, 1129
GluI GCNGC 1 cut(s) 853
GsuI CTGGAG 2 cut(s) 756, 1199
HaeII RGCGCY 1 cut(s) 351
HaeIII GGCC 7 cut(s) 154, 293, 342, 791, 852, 1287, 1391
HapII CCGG 5 cut(s) 339, 467, 647, 1068, 1223
HgaI GACGC 1 cut(s) 179
HhaI GCGC 4 cut(s) 190, 283, 350, 1130
Hin1II CATG 6 cut(s) 60, 258, 733, 842, 892, 1564
Hin6I GCGC 4 cut(s) 188, 281, 348, 1128
HinP1I GCGC 4 cut(s) 188, 281, 348, 1128
HincII GTYRAC 2 cut(s) 399, 1498
HindII GTYRAC 2 cut(s) 399, 1498
HindIII AAGCTT 1 cut(s) 387
HinfI GANTC 5 cut(s) 241, 313, 462, 643, 1268
HpaII CCGG 5 cut(s) 339, 467, 647, 1068, 1223
HphI GGTGA 3 cut(s) 469, 698, 929
Hpy166II GTNNAC 6 cut(s) 270, 399, 477, 995, 1275, 1498
Hpy188I TCNGA 6 cut(s) 108, 312, 378, 826, 1400, 1558
Hpy8I GTNNAC 6 cut(s) 270, 399, 477, 995, 1275, 1498
Hpy99I CGWCG 1 cut(s) 1141
HpyAV CCTTC 9 cut(s) 36, 232, 595, 794, 1068, 1088, 1252, 1317, 1556
HpyCH4III ACNGT 1 cut(s) 822
HpyCH4IV ACGT 2 cut(s) 10, 621
HpyCH4V TGCA 4 cut(s) 4, 19, 38, 1479
HpyF10VI GCNNNNNNNGC 6 cut(s) 512, 746, 959, 968, 977, 1333
HpyF3I CTNAG 5 cut(s) 344, 741, 958, 972, 1143
HpySE526I ACGT 2 cut(s) 10, 621
Hsp92II CATG 6 cut(s) 60, 258, 733, 842, 892, 1564
HspAI GCGC 4 cut(s) 188, 281, 348, 1128
Kpn2I TCCGGA 1 cut(s) 1067
Ksp22I TGATCA 3 cut(s) 361, 859, 1111
Kzo9I GATC 8 cut(s) 335, 361, 859, 1111, 1153, 1168, 1279, 1420
LguI GCTCTTC 3 cut(s) 540, 577, 1362
LmnI GCTCC 3 cut(s) 99, 737, 890
LweI GCATC 6 cut(s) 736, 754, 880, 967, 1089, 1488
MaeI CTAG 4 cut(s) 713, 759, 1205, 1428
MaeII ACGT 2 cut(s) 10, 621
MaeIII GTNAC 4 cut(s) 295, 612, 637, 1182
MalI GATC 8 cut(s) 337, 363, 861, 1113, 1155, 1170, 1281, 1422
MboI GATC 8 cut(s) 335, 361, 859, 1111, 1153, 1168, 1279, 1420
MfeI CAATTG 1 cut(s) 1352
MflI RGATCY 2 cut(s) 335, 1420
MhlI GDGCHC 3 cut(s) 589, 788, 1223
MlsI TGGCCA 1 cut(s) 1287
MluCI AATT 7 cut(s) 231, 325, 675, 897, 1012, 1190, 1352
MluNI TGGCCA 1 cut(s) 1287
MlyI GAGTC 1 cut(s) 307
MmeI TCCRAC 1 cut(s) 1067
Mox20I TGGCCA 1 cut(s) 1287
Mph1103I ATGCAT 1 cut(s) 1481
MroI TCCGGA 1 cut(s) 1067
MroXI GAANNNNTTC 1 cut(s) 1536
MscI TGGCCA 1 cut(s) 1287
MseI TTAA 2 cut(s) 41, 1527
Msp20I TGGCCA 1 cut(s) 1287
MspI CCGG 5 cut(s) 339, 467, 647, 1068, 1223
MspR9I CCNGG 4 cut(s) 156, 467, 468, 1223
MunI CAATTG 1 cut(s) 1352
Mva1269I GAATGC 2 cut(s) 102, 1077
MvaI CCWGG 1 cut(s) 156
MvnI CGCG 2 cut(s) 190, 354
MwoI GCNNNNNNNGC 6 cut(s) 512, 746, 959, 968, 977, 1333
NciI CCSGG 3 cut(s) 467, 468, 1223
NcoI CCATGG 2 cut(s) 56, 888
NdeII GATC 8 cut(s) 335, 361, 859, 1111, 1153, 1168, 1279, 1420
NlaIII CATG 6 cut(s) 60, 258, 733, 842, 892, 1564
NlaIV GGNNCC 1 cut(s) 1544
NmeAIII GCCGAG 1 cut(s) 767
NmuCI GTSAC 3 cut(s) 295, 612, 637
NsbI TGCGCA 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 1481
NspI RCATGY 1 cut(s) 1564
PaeR7I CTCGAG 1 cut(s) 114
PciI ACATGT 1 cut(s) 1560
PciSI GCTCTTC 3 cut(s) 540, 577, 1362
PcsI WCGNNNNNNNCGW 1 cut(s) 1457
PctI GAATGC 2 cut(s) 102, 1077
PdmI GAANNNNTTC 1 cut(s) 1536
PfeI GAWTC 4 cut(s) 241, 462, 643, 1268
PflMI CCANNNNNTGG 1 cut(s) 1507
PkrI GCNGC 1 cut(s) 854
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Ppu21I YACGTR 1 cut(s) 11
PscI ACATGT 1 cut(s) 1560
PshAI GACNNNNGTC 1 cut(s) 574
Psp124BI GAGCTC 1 cut(s) 589
Psp6I CCWGG 1 cut(s) 154
PspGI CCWGG 1 cut(s) 154
PspN4I GGNNCC 1 cut(s) 1544
PspPI GGNCC 2 cut(s) 569, 1542
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 2 cut(s) 335, 1420
RsaI GTAC 4 cut(s) 84, 805, 996, 1463
RsaNI GTAC 4 cut(s) 83, 804, 995, 1462
SacI GAGCTC 1 cut(s) 589
SalI GTCGAC 1 cut(s) 1496
SapI GCTCTTC 3 cut(s) 540, 577, 1362
SaqAI TTAA 2 cut(s) 41, 1527
SatI GCNGC 1 cut(s) 853
Sau3AI GATC 8 cut(s) 335, 361, 859, 1111, 1153, 1168, 1279, 1420
Sau96I GGNCC 2 cut(s) 569, 1542
ScaI AGTACT 1 cut(s) 84
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 4 cut(s) 156, 467, 468, 1223
SduI GDGCHC 3 cut(s) 589, 788, 1223
SfaNI GCATC 6 cut(s) 736, 754, 880, 967, 1089, 1488
Sfr274I CTCGAG 1 cut(s) 114
SinI GGWCC 2 cut(s) 569, 1542
SlaI CTCGAG 1 cut(s) 114
SmaI CCCGGG 1 cut(s) 468
SmlI CTYRAG 2 cut(s) 114, 134
SmoI CTYRAG 2 cut(s) 114, 134
SpeI ACTAGT 1 cut(s) 758
Sse9I AATT 7 cut(s) 231, 325, 675, 897, 1012, 1190, 1352
SsiI CCGC 4 cut(s) 352, 433, 853, 980
SspMI CTAG 4 cut(s) 713, 759, 1205, 1428
SstI GAGCTC 1 cut(s) 589
StyD4I CCNGG 4 cut(s) 154, 465, 466, 1221
StyI CCWWGG 6 cut(s) 56, 92, 540, 888, 1020, 1501
TaaI ACNGT 1 cut(s) 822
TaiI ACGT 2 cut(s) 13, 624
TaqI TCGA 7 cut(s) 115, 521, 939, 1105, 1197, 1359, 1497
TaqII GACCGA 2 cut(s) 1441, 1530
TasI AATT 7 cut(s) 231, 325, 675, 897, 1012, 1190, 1352
TatI WGTACW 1 cut(s) 82
TauI GCSGC 1 cut(s) 855
TfiI GAWTC 4 cut(s) 241, 462, 643, 1268
Tru1I TTAA 2 cut(s) 41, 1527
Tru9I TTAA 2 cut(s) 41, 1527
TscAI CASTG 2 cut(s) 150, 283
TseFI GTSAC 3 cut(s) 295, 612, 637
Tsp45I GTSAC 3 cut(s) 295, 612, 637
TspDTI ATGAA 4 cut(s) 193, 243, 828, 1283
TspMI CCCGGG 1 cut(s) 466
TspRI CASTG 2 cut(s) 150, 283
Van91I CCANNNNNTGG 1 cut(s) 1507
VpaK11BI GGWCC 2 cut(s) 569, 1542
XagI CCTNNNNNAGG 1 cut(s) 971
XceI RCATGY 1 cut(s) 1564
XhoI CTCGAG 1 cut(s) 114
XmaI CCCGGG 1 cut(s) 466
XmiI GTMKAC 2 cut(s) 1274, 1497
XmnI GAANNNNTTC 1 cut(s) 1536
XspI CTAG 4 cut(s) 713, 759, 1205, 1428
ZrmI AGTACT 1 cut(s) 84
Zsp2I ATGCAT 1 cut(s) 1481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.