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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 574 |
| AccIII | TCCGGA | 1 cut(s) | 6 |
| AciI | CCGC | 1 cut(s) | 362 |
| AclWI | GGATC | 1 cut(s) | 387 |
| AcoI | YGGCCR | 4 cut(s) | 346, 363, 427, 568 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 436 |
| AgsI | TTSAA | 5 cut(s) | 204, 436, 482, 500, 581 |
| AluBI | AGCT | 3 cut(s) | 22, 231, 301 |
| AluI | AGCT | 3 cut(s) | 22, 231, 301 |
| Alw26I | GTCTC | 1 cut(s) | 215 |
| AlwI | GGATC | 1 cut(s) | 387 |
| Aor13HI | TCCGGA | 1 cut(s) | 6 |
| AoxI | GGCC | 4 cut(s) | 346, 363, 427, 568 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 164, 196 |
| AspLEI | GCGC | 1 cut(s) | 466 |
| AspS9I | GGNCC | 1 cut(s) | 4 |
| AsuHPI | GGTGA | 1 cut(s) | 295 |
| AsuNHI | GCTAGC | 1 cut(s) | 524 |
| AvaII | GGWCC | 1 cut(s) | 4 |
| BalI | TGGCCA | 1 cut(s) | 348 |
| BbsI | GAAGAC | 1 cut(s) | 529 |
| BccI | CCATC | 3 cut(s) | 67, 271, 328 |
| BceAI | ACGGC | 3 cut(s) | 414, 442, 555 |
| BcoDI | GTCTC | 1 cut(s) | 215 |
| BfaI | CTAG | 2 cut(s) | 318, 525 |
| BisI | GCNGC | 1 cut(s) | 363 |
| BlsI | GCNGC | 1 cut(s) | 364 |
| Bme18I | GGWCC | 1 cut(s) | 4 |
| BmgT120I | GGNCC | 1 cut(s) | 4 |
| BmtI | GCTAGC | 1 cut(s) | 528 |
| BpiI | GAAGAC | 1 cut(s) | 529 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 70, 102 |
| BpuEI | CTTGAG | 1 cut(s) | 530 |
| BsaWI | WCCGGW | 1 cut(s) | 6 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 585 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 436 |
| Bse1I | ACTGG | 1 cut(s) | 571 |
| BseAI | TCCGGA | 1 cut(s) | 6 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 436 |
| BseMII | CTCAG | 1 cut(s) | 60 |
| BseNI | ACTGG | 1 cut(s) | 571 |
| BseRI | GAGGAG | 2 cut(s) | 233, 455 |
| BseX3I | CGGCCG | 1 cut(s) | 427 |
| Bsh1285I | CGRYCG | 1 cut(s) | 430 |
| BshFI | GGCC | 4 cut(s) | 348, 365, 429, 570 |
| BsiEI | CGRYCG | 1 cut(s) | 430 |
| BsiSI | CCGG | 1 cut(s) | 7 |
| BslFI | GGGAC | 2 cut(s) | 47, 575 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 436 |
| BsmAI | GTCTC | 1 cut(s) | 215 |
| BsmFI | GGGAC | 2 cut(s) | 47, 575 |
| BsmI | GAATGC | 1 cut(s) | 528 |
| BsnI | GGCC | 4 cut(s) | 348, 365, 429, 570 |
| Bsp13I | TCCGGA | 1 cut(s) | 6 |
| Bsp143I | GATC | 2 cut(s) | 210, 379 |
| BspACI | CCGC | 1 cut(s) | 362 |
| BspANI | GGCC | 4 cut(s) | 348, 365, 429, 570 |
| BspCNI | CTCAG | 1 cut(s) | 61 |
| BspEI | TCCGGA | 1 cut(s) | 6 |
| BspHI | TCATGA | 1 cut(s) | 190 |
| BspOI | GCTAGC | 1 cut(s) | 528 |
| BspPI | GGATC | 1 cut(s) | 387 |
| BsrI | ACTGG | 1 cut(s) | 571 |
| BssMI | GATC | 2 cut(s) | 210, 379 |
| Bst4CI | ACNGT | 1 cut(s) | 470 |
| BstC8I | GCNNGC | 1 cut(s) | 526 |
| BstDEI | CTNAG | 3 cut(s) | 23, 69, 292 |
| BstHHI | GCGC | 1 cut(s) | 466 |
| BstKTI | GATC | 2 cut(s) | 213, 382 |
| BstMAI | GTCTC | 1 cut(s) | 215 |
| BstMBI | GATC | 2 cut(s) | 210, 379 |
| BstMCI | CGRYCG | 1 cut(s) | 430 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 362 |
| BstV2I | GAAGAC | 1 cut(s) | 529 |
| BstX2I | RGATCY | 1 cut(s) | 379 |
| BstYI | RGATCY | 1 cut(s) | 379 |
| BstZI | CGGCCG | 1 cut(s) | 427 |
| BsuRI | GGCC | 4 cut(s) | 348, 365, 429, 570 |
| BtsI | GCAGTG | 1 cut(s) | 543 |
| BtsIMutI | CAGTG | 4 cut(s) | 119, 418, 543, 564 |
| Cac8I | GCNNGC | 1 cut(s) | 526 |
| CciI | TCATGA | 1 cut(s) | 190 |
| CfoI | GCGC | 1 cut(s) | 466 |
| Cfr13I | GGNCC | 1 cut(s) | 4 |
| CseI | GACGC | 1 cut(s) | 530 |
| CviAII | CATG | 2 cut(s) | 191, 323 |
| DdeI | CTNAG | 3 cut(s) | 23, 69, 292 |
| DpnI | GATC | 2 cut(s) | 212, 381 |
| DpnII | GATC | 2 cut(s) | 210, 379 |
| EaeI | YGGCCR | 4 cut(s) | 346, 363, 427, 568 |
| EagI | CGGCCG | 1 cut(s) | 427 |
| EclXI | CGGCCG | 1 cut(s) | 427 |
| Eco47I | GGWCC | 1 cut(s) | 4 |
| Eco52I | CGGCCG | 1 cut(s) | 427 |
| FaeI | CATG | 2 cut(s) | 194, 326 |
| FaiI | YATR | 6 cut(s) | 184, 192, 324, 390, 518, 591 |
| FaqI | GGGAC | 2 cut(s) | 47, 575 |
| FatI | CATG | 2 cut(s) | 190, 322 |
| FblI | GTMKAC | 1 cut(s) | 574 |
| Fnu4HI | GCNGC | 1 cut(s) | 363 |
| Fsp4HI | GCNGC | 1 cut(s) | 363 |
| FspBI | CTAG | 2 cut(s) | 318, 525 |
| GlaI | GCGC | 1 cut(s) | 465 |
| GluI | GCNGC | 1 cut(s) | 363 |
| HaeIII | GGCC | 4 cut(s) | 348, 365, 429, 570 |
| HapII | CCGG | 1 cut(s) | 7 |
| HgaI | GACGC | 1 cut(s) | 530 |
| HhaI | GCGC | 1 cut(s) | 466 |
| Hin1II | CATG | 2 cut(s) | 194, 326 |
| Hin6I | GCGC | 1 cut(s) | 464 |
| HinP1I | GCGC | 1 cut(s) | 464 |
| HindIII | AAGCTT | 1 cut(s) | 229 |
| HinfI | GANTC | 1 cut(s) | 81 |
| HpaII | CCGG | 1 cut(s) | 7 |
| HphI | GGTGA | 1 cut(s) | 295 |
| Hpy166II | GTNNAC | 1 cut(s) | 575 |
| Hpy188III | TCNNGA | 5 cut(s) | 7, 152, 191, 208, 479 |
| Hpy8I | GTNNAC | 1 cut(s) | 575 |
| Hpy99I | CGWCG | 1 cut(s) | 20 |
| HpyAV | CCTTC | 2 cut(s) | 152, 207 |
| HpyCH4III | ACNGT | 1 cut(s) | 470 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 362 |
| HpyF3I | CTNAG | 3 cut(s) | 23, 69, 292 |
| Hsp92II | CATG | 2 cut(s) | 194, 326 |
| HspAI | GCGC | 1 cut(s) | 464 |
| Kpn2I | TCCGGA | 1 cut(s) | 6 |
| Kzo9I | GATC | 2 cut(s) | 210, 379 |
| LpnPI | CCDG | 5 cut(s) | 20, 137, 239, 546, 552 |
| MaeI | CTAG | 2 cut(s) | 318, 525 |
| MalI | GATC | 2 cut(s) | 212, 381 |
| MboI | GATC | 2 cut(s) | 210, 379 |
| MboII | GAAGA | 4 cut(s) | 58, 192, 266, 529 |
| MflI | RGATCY | 1 cut(s) | 379 |
| MlsI | TGGCCA | 1 cut(s) | 348 |
| MluCI | AATT | 2 cut(s) | 495, 586 |
| MluNI | TGGCCA | 1 cut(s) | 348 |
| MmeI | TCCRAC | 2 cut(s) | 170, 259 |
| MnlI | CCTC | 5 cut(s) | 102, 211, 370, 431, 433 |
| Mox20I | TGGCCA | 1 cut(s) | 348 |
| MroI | TCCGGA | 1 cut(s) | 6 |
| MscI | TGGCCA | 1 cut(s) | 348 |
| MseI | TTAA | 2 cut(s) | 446, 552 |
| Msp20I | TGGCCA | 1 cut(s) | 348 |
| MspI | CCGG | 1 cut(s) | 7 |
| Mva1269I | GAATGC | 1 cut(s) | 528 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 362 |
| NdeII | GATC | 2 cut(s) | 210, 379 |
| NheI | GCTAGC | 1 cut(s) | 524 |
| NlaIII | CATG | 2 cut(s) | 194, 326 |
| PagI | TCATGA | 1 cut(s) | 190 |
| PctI | GAATGC | 1 cut(s) | 528 |
| PfeI | GAWTC | 1 cut(s) | 81 |
| PkrI | GCNGC | 1 cut(s) | 364 |
| PspPI | GGNCC | 1 cut(s) | 4 |
| PsuI | RGATCY | 1 cut(s) | 379 |
| SaqAI | TTAA | 2 cut(s) | 446, 552 |
| SatI | GCNGC | 1 cut(s) | 363 |
| Sau3AI | GATC | 2 cut(s) | 210, 379 |
| Sau96I | GGNCC | 1 cut(s) | 4 |
| SetI | ASST | 8 cut(s) | 24, 94, 233, 258, 293, 303, 423, 510 |
| SinI | GGWCC | 1 cut(s) | 4 |
| SmlI | CTYRAG | 1 cut(s) | 509 |
| SmoI | CTYRAG | 1 cut(s) | 509 |
| Sse9I | AATT | 2 cut(s) | 495, 586 |
| SsiI | CCGC | 1 cut(s) | 362 |
| SspMI | CTAG | 2 cut(s) | 318, 525 |
| TaaI | ACNGT | 1 cut(s) | 470 |
| TaqI | TCGA | 4 cut(s) | 18, 88, 165, 207 |
| TasI | AATT | 2 cut(s) | 495, 586 |
| TauI | GCSGC | 1 cut(s) | 365 |
| TfiI | GAWTC | 1 cut(s) | 81 |
| Tru1I | TTAA | 2 cut(s) | 446, 552 |
| Tru9I | TTAA | 2 cut(s) | 446, 552 |
| TscAI | CASTG | 4 cut(s) | 126, 418, 550, 571 |
| TspDTI | ATGAA | 3 cut(s) | 59, 339, 529 |
| TspRI | CASTG | 4 cut(s) | 126, 418, 550, 571 |
| VpaK11BI | GGWCC | 1 cut(s) | 4 |
| XmiI | GTMKAC | 1 cut(s) | 574 |
| XspI | CTAG | 2 cut(s) | 318, 525 |