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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 98, 196 |
| AciI | CCGC | 1 cut(s) | 373 |
| AclWI | GGATC | 1 cut(s) | 93 |
| AcoI | YGGCCR | 1 cut(s) | 525 |
| AcyI | GRCGYC | 1 cut(s) | 782 |
| AfaI | GTAC | 1 cut(s) | 284 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 568, 707, 708 |
| AflIII | ACRYGT | 1 cut(s) | 50 |
| AgsI | TTSAA | 4 cut(s) | 64, 749, 790, 827 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 677, 709 |
| AleI | CACNNNNGTG | 1 cut(s) | 121 |
| AluBI | AGCT | 8 cut(s) | 59, 182, 294, 449, 575, 592, 626, 820 |
| AluI | AGCT | 8 cut(s) | 59, 182, 294, 449, 575, 592, 626, 820 |
| Alw26I | GTCTC | 5 cut(s) | 26, 38, 649, 747, 793 |
| AlwI | GGATC | 1 cut(s) | 93 |
| Ama87I | CYCGRG | 1 cut(s) | 701 |
| AoxI | GGCC | 1 cut(s) | 525 |
| AsuHPI | GGTGA | 2 cut(s) | 135, 596 |
| AvaI | CYCGRG | 1 cut(s) | 701 |
| BaeGI | GKGCMC | 1 cut(s) | 433 |
| BalI | TGGCCA | 1 cut(s) | 527 |
| BanI | GGYRCC | 2 cut(s) | 98, 196 |
| BccI | CCATC | 3 cut(s) | 33, 154, 377 |
| BceAI | ACGGC | 1 cut(s) | 218 |
| BcoDI | GTCTC | 5 cut(s) | 26, 38, 649, 747, 793 |
| BfaI | CTAG | 3 cut(s) | 321, 399, 593 |
| BisI | GCNGC | 1 cut(s) | 373 |
| BlsI | GCNGC | 1 cut(s) | 374 |
| BmeT110I | CYCGRG | 1 cut(s) | 701 |
| BmiI | GGNNCC | 5 cut(s) | 100, 192, 198, 547, 699 |
| BmrI | ACTGGG | 1 cut(s) | 331 |
| BmuI | ACTGGG | 1 cut(s) | 331 |
| BpuEI | CTTGAG | 1 cut(s) | 104 |
| BsaAI | YACGTR | 1 cut(s) | 51 |
| BsaHI | GRCGYC | 1 cut(s) | 782 |
| BsaJI | CCNNGG | 4 cut(s) | 425, 528, 567, 693 |
| BsaWI | WCCGGW | 1 cut(s) | 193 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 35, 65 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 568, 707, 708 |
| Bse118I | RCCGGY | 1 cut(s) | 187 |
| Bse1I | ACTGG | 1 cut(s) | 337 |
| Bse3DI | GCAATG | 1 cut(s) | 224 |
| BseDI | CCNNGG | 4 cut(s) | 425, 528, 567, 693 |
| BseGI | GGATG | 1 cut(s) | 146 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 568, 707, 708 |
| BseMI | GCAATG | 1 cut(s) | 224 |
| BseMII | CTCAG | 1 cut(s) | 36 |
| BseNI | ACTGG | 1 cut(s) | 337 |
| BseSI | GKGCMC | 1 cut(s) | 433 |
| Bsh1285I | CGRYCG | 1 cut(s) | 407 |
| BshFI | GGCC | 1 cut(s) | 527 |
| BshNI | GGYRCC | 2 cut(s) | 98, 196 |
| BsiEI | CGRYCG | 1 cut(s) | 407 |
| BsiHKCI | CYCGRG | 1 cut(s) | 701 |
| BsiSI | CCGG | 3 cut(s) | 188, 194, 200 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 568, 707, 708 |
| BsmAI | GTCTC | 5 cut(s) | 26, 38, 649, 747, 793 |
| BsmBI | CGTCTC | 1 cut(s) | 26 |
| BsnI | GGCC | 1 cut(s) | 527 |
| BsoBI | CYCGRG | 1 cut(s) | 701 |
| Bsp1286I | GDGCHC | 1 cut(s) | 433 |
| Bsp1407I | TGTACA | 1 cut(s) | 282 |
| Bsp143I | GATC | 2 cut(s) | 85, 404 |
| Bsp19I | CCATGG | 1 cut(s) | 528 |
| BspACI | CCGC | 1 cut(s) | 373 |
| BspANI | GGCC | 1 cut(s) | 527 |
| BspCNI | CTCAG | 1 cut(s) | 35 |
| BspLI | GGNNCC | 5 cut(s) | 100, 192, 198, 547, 699 |
| BspPI | GGATC | 1 cut(s) | 93 |
| BspT107I | GGYRCC | 2 cut(s) | 98, 196 |
| BsrDI | GCAATG | 1 cut(s) | 224 |
| BsrFI | RCCGGY | 1 cut(s) | 187 |
| BsrGI | TGTACA | 1 cut(s) | 282 |
| BsrI | ACTGG | 1 cut(s) | 337 |
| BssAI | RCCGGY | 1 cut(s) | 187 |
| BssECI | CCNNGG | 4 cut(s) | 425, 528, 567, 693 |
| BssMI | GATC | 2 cut(s) | 85, 404 |
| BssNI | GRCGYC | 1 cut(s) | 782 |
| BssT1I | CCWWGG | 3 cut(s) | 528, 567, 693 |
| Bst6I | CTCTTC | 2 cut(s) | 59, 95 |
| BstACI | GRCGYC | 1 cut(s) | 782 |
| BstAUI | TGTACA | 1 cut(s) | 282 |
| BstBAI | YACGTR | 1 cut(s) | 51 |
| BstC8I | GCNNGC | 1 cut(s) | 231 |
| BstDEI | CTNAG | 1 cut(s) | 22 |
| BstDSI | CCRYGG | 2 cut(s) | 425, 528 |
| BstF5I | GGATG | 1 cut(s) | 146 |
| BstKTI | GATC | 2 cut(s) | 88, 407 |
| BstMAI | GTCTC | 5 cut(s) | 26, 38, 649, 747, 793 |
| BstMBI | GATC | 2 cut(s) | 85, 404 |
| BstMCI | CGRYCG | 1 cut(s) | 407 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 188 |
| BstSLI | GKGCMC | 1 cut(s) | 433 |
| BstX2I | RGATCY | 1 cut(s) | 85 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 626 |
| BstYI | RGATCY | 1 cut(s) | 85 |
| BsuRI | GGCC | 1 cut(s) | 527 |
| BtgI | CCRYGG | 2 cut(s) | 425, 528 |
| BtsCI | GGATG | 1 cut(s) | 146 |
| Cac8I | GCNNGC | 1 cut(s) | 231 |
| Cfr10I | RCCGGY | 1 cut(s) | 187 |
| CseI | GACGC | 1 cut(s) | 771 |
| Csp6I | GTAC | 1 cut(s) | 283 |
| CviAII | CATG | 4 cut(s) | 289, 301, 529, 620 |
| CviQI | GTAC | 1 cut(s) | 283 |
| DdeI | CTNAG | 1 cut(s) | 22 |
| DpnI | GATC | 2 cut(s) | 87, 406 |
| DpnII | GATC | 2 cut(s) | 85, 404 |
| DraI | TTTAAA | 1 cut(s) | 379 |
| EaeI | YGGCCR | 1 cut(s) | 525 |
| Eam1104I | CTCTTC | 2 cut(s) | 59, 95 |
| EarI | CTCTTC | 2 cut(s) | 59, 95 |
| Eco130I | CCWWGG | 3 cut(s) | 528, 567, 693 |
| Eco32I | GATATC | 1 cut(s) | 7 |
| Eco88I | CYCGRG | 1 cut(s) | 701 |
| EcoRV | GATATC | 1 cut(s) | 7 |
| EcoT14I | CCWWGG | 3 cut(s) | 528, 567, 693 |
| ErhI | CCWWGG | 3 cut(s) | 528, 567, 693 |
| Esp3I | CGTCTC | 1 cut(s) | 26 |
| FaeI | CATG | 4 cut(s) | 292, 304, 532, 623 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 677, 709 |
| FatI | CATG | 4 cut(s) | 288, 300, 528, 619 |
| Fnu4HI | GCNGC | 1 cut(s) | 373 |
| FokI | GGATG | 1 cut(s) | 133 |
| Fsp4HI | GCNGC | 1 cut(s) | 373 |
| FspBI | CTAG | 3 cut(s) | 321, 399, 593 |
| GluI | GCNGC | 1 cut(s) | 373 |
| HaeIII | GGCC | 1 cut(s) | 527 |
| HapII | CCGG | 3 cut(s) | 188, 194, 200 |
| HgaI | GACGC | 1 cut(s) | 771 |
| Hin1I | GRCGYC | 1 cut(s) | 782 |
| Hin1II | CATG | 4 cut(s) | 292, 304, 532, 623 |
| HincII | GTYRAC | 1 cut(s) | 603 |
| HindII | GTYRAC | 1 cut(s) | 603 |
| HinfI | GANTC | 2 cut(s) | 203, 740 |
| HpaII | CCGG | 3 cut(s) | 188, 194, 200 |
| HphI | GGTGA | 2 cut(s) | 135, 596 |
| Hpy166II | GTNNAC | 2 cut(s) | 283, 603 |
| Hpy188I | TCNGA | 2 cut(s) | 25, 344 |
| Hpy188III | TCNNGA | 2 cut(s) | 701, 746 |
| Hpy8I | GTNNAC | 2 cut(s) | 283, 603 |
| HpyCH4IV | ACGT | 1 cut(s) | 50 |
| HpyCH4V | TGCA | 3 cut(s) | 71, 416, 632 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 188 |
| HpyF3I | CTNAG | 1 cut(s) | 22 |
| HpySE526I | ACGT | 1 cut(s) | 50 |
| Hsp92I | GRCGYC | 1 cut(s) | 782 |
| Hsp92II | CATG | 4 cut(s) | 292, 304, 532, 623 |
| Kzo9I | GATC | 2 cut(s) | 85, 404 |
| LmnI | GCTCC | 3 cut(s) | 196, 545, 825 |
| LpnPI | CCDG | 8 cut(s) | 79, 93, 201, 207, 213, 350, 402, 612 |
| MaeI | CTAG | 3 cut(s) | 321, 399, 593 |
| MaeII | ACGT | 1 cut(s) | 50 |
| MaeIII | GTNAC | 1 cut(s) | 316 |
| MalI | GATC | 2 cut(s) | 87, 406 |
| MboI | GATC | 2 cut(s) | 85, 404 |
| MboII | GAAGA | 4 cut(s) | 76, 82, 316, 697 |
| MfeI | CAATTG | 1 cut(s) | 776 |
| MflI | RGATCY | 1 cut(s) | 85 |
| MhlI | GDGCHC | 1 cut(s) | 433 |
| MlsI | TGGCCA | 1 cut(s) | 527 |
| MluCI | AATT | 1 cut(s) | 776 |
| MluNI | TGGCCA | 1 cut(s) | 527 |
| MlyI | GAGTC | 1 cut(s) | 749 |
| MmeI | TCCRAC | 1 cut(s) | 747 |
| MnlI | CCTC | 4 cut(s) | 31, 75, 343, 573 |
| Mox20I | TGGCCA | 1 cut(s) | 527 |
| MscI | TGGCCA | 1 cut(s) | 527 |
| MseI | TTAA | 1 cut(s) | 378 |
| MslI | CAYNNNNRTG | 1 cut(s) | 121 |
| Msp20I | TGGCCA | 1 cut(s) | 527 |
| MspI | CCGG | 3 cut(s) | 188, 194, 200 |
| MunI | CAATTG | 1 cut(s) | 776 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 188 |
| NcoI | CCATGG | 1 cut(s) | 528 |
| NdeII | GATC | 2 cut(s) | 85, 404 |
| NlaIII | CATG | 4 cut(s) | 292, 304, 532, 623 |
| NlaIV | GGNNCC | 5 cut(s) | 100, 192, 198, 547, 699 |
| OliI | CACNNNNGTG | 1 cut(s) | 121 |
| PfeI | GAWTC | 1 cut(s) | 203 |
| PkrI | GCNGC | 1 cut(s) | 374 |
| Ple19I | CGATCG | 1 cut(s) | 407 |
| PleI | GAGTC | 1 cut(s) | 748 |
| PpsI | GAGTC | 1 cut(s) | 748 |
| Ppu21I | YACGTR | 1 cut(s) | 51 |
| PspN4I | GGNNCC | 5 cut(s) | 100, 192, 198, 547, 699 |
| PsuI | RGATCY | 1 cut(s) | 85 |
| PvuI | CGATCG | 1 cut(s) | 407 |
| RsaI | GTAC | 1 cut(s) | 284 |
| RsaNI | GTAC | 1 cut(s) | 283 |
| RseI | CAYNNNNRTG | 1 cut(s) | 121 |
| SaqAI | TTAA | 1 cut(s) | 378 |
| SatI | GCNGC | 1 cut(s) | 373 |
| Sau3AI | GATC | 2 cut(s) | 85, 404 |
| SchI | GAGTC | 1 cut(s) | 749 |
| SduI | GDGCHC | 1 cut(s) | 433 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 121 |
| SmlI | CTYRAG | 1 cut(s) | 119 |
| SmoI | CTYRAG | 1 cut(s) | 119 |
| Sse9I | AATT | 1 cut(s) | 776 |
| SsiI | CCGC | 1 cut(s) | 373 |
| SspMI | CTAG | 3 cut(s) | 321, 399, 593 |
| StyI | CCWWGG | 3 cut(s) | 528, 567, 693 |
| TaiI | ACGT | 1 cut(s) | 53 |
| TasI | AATT | 1 cut(s) | 776 |
| TatI | WGTACW | 1 cut(s) | 282 |
| TauI | GCSGC | 1 cut(s) | 375 |
| TfiI | GAWTC | 1 cut(s) | 203 |
| Tru1I | TTAA | 1 cut(s) | 378 |
| Tru9I | TTAA | 1 cut(s) | 378 |
| TspDTI | ATGAA | 3 cut(s) | 213, 317, 698 |
| TspGWI | ACGGA | 1 cut(s) | 414 |
| XspI | CTAG | 3 cut(s) | 321, 399, 593 |