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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 224 |
| AccII | CGCG | 1 cut(s) | 92 |
| AciI | CCGC | 2 cut(s) | 92, 163 |
| AclWI | GGATC | 1 cut(s) | 76 |
| AcoI | YGGCCR | 5 cut(s) | 10, 60, 160, 252, 312 |
| AcvI | CACGTG | 1 cut(s) | 310 |
| AcyI | GRCGYC | 1 cut(s) | 75 |
| AfaI | GTAC | 1 cut(s) | 372 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 91 |
| AgsI | TTSAA | 2 cut(s) | 191, 295 |
| AjiI | CACGTC | 1 cut(s) | 220 |
| AluBI | AGCT | 3 cut(s) | 101, 128, 261 |
| AluI | AGCT | 3 cut(s) | 101, 128, 261 |
| AlwI | GGATC | 1 cut(s) | 76 |
| AoxI | GGCC | 5 cut(s) | 10, 60, 160, 252, 312 |
| AspLEI | GCGC | 1 cut(s) | 92 |
| AsuHPI | GGTGA | 2 cut(s) | 83, 155 |
| BalI | TGGCCA | 2 cut(s) | 12, 62 |
| BbrPI | CACGTG | 1 cut(s) | 310 |
| BccI | CCATC | 3 cut(s) | 2, 152, 341 |
| BclI | TGATCA | 2 cut(s) | 145, 169 |
| BfaI | CTAG | 1 cut(s) | 379 |
| BisI | GCNGC | 1 cut(s) | 163 |
| BlsI | GCNGC | 1 cut(s) | 164 |
| BmgBI | CACGTC | 1 cut(s) | 220 |
| BmsI | GCATC | 3 cut(s) | 7, 257, 294 |
| BsaAI | YACGTR | 1 cut(s) | 310 |
| BsaHI | GRCGYC | 1 cut(s) | 75 |
| BsaJI | CCNNGG | 1 cut(s) | 284 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 91 |
| Bse1I | ACTGG | 1 cut(s) | 73 |
| BseDI | CCNNGG | 1 cut(s) | 284 |
| BseGI | GGATG | 2 cut(s) | 10, 294 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BseMII | CTCAG | 1 cut(s) | 111 |
| BseNI | ACTGG | 1 cut(s) | 73 |
| BsgI | GTGCAG | 1 cut(s) | 217 |
| Bsh1236I | CGCG | 1 cut(s) | 92 |
| BshFI | GGCC | 5 cut(s) | 12, 62, 162, 254, 314 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 91 |
| BsnI | GGCC | 5 cut(s) | 12, 62, 162, 254, 314 |
| Bsp143I | GATC | 3 cut(s) | 81, 145, 169 |
| BspACI | CCGC | 2 cut(s) | 92, 163 |
| BspANI | GGCC | 5 cut(s) | 12, 62, 162, 254, 314 |
| BspCNI | CTCAG | 1 cut(s) | 110 |
| BspFNI | CGCG | 1 cut(s) | 92 |
| BspPI | GGATC | 1 cut(s) | 76 |
| BsrI | ACTGG | 1 cut(s) | 73 |
| BssECI | CCNNGG | 1 cut(s) | 284 |
| BssMI | GATC | 3 cut(s) | 81, 145, 169 |
| BssNI | GRCGYC | 1 cut(s) | 75 |
| BssT1I | CCWWGG | 1 cut(s) | 284 |
| BstACI | GRCGYC | 1 cut(s) | 75 |
| BstBAI | YACGTR | 1 cut(s) | 310 |
| BstC8I | GCNNGC | 1 cut(s) | 263 |
| BstDEI | CTNAG | 1 cut(s) | 97 |
| BstF5I | GGATG | 2 cut(s) | 10, 294 |
| BstFNI | CGCG | 1 cut(s) | 92 |
| BstHHI | GCGC | 1 cut(s) | 92 |
| BstKTI | GATC | 3 cut(s) | 84, 148, 172 |
| BstMBI | GATC | 3 cut(s) | 81, 145, 169 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 98 |
| BstUI | CGCG | 1 cut(s) | 92 |
| BsuRI | GGCC | 5 cut(s) | 12, 62, 162, 254, 314 |
| BtrI | CACGTC | 1 cut(s) | 220 |
| BtsCI | GGATG | 2 cut(s) | 10, 294 |
| Cac8I | GCNNGC | 1 cut(s) | 263 |
| CfoI | GCGC | 1 cut(s) | 92 |
| CseI | GACGC | 1 cut(s) | 83 |
| Csp6I | GTAC | 1 cut(s) | 371 |
| CviAII | CATG | 2 cut(s) | 199, 214 |
| CviJI | RGCY | 9 cut(s) | 12, 26, 62, 101, 128, 162, 254, 261, 314 |
| CviKI_1 | RGCY | 9 cut(s) | 12, 26, 62, 101, 128, 162, 254, 261, 314 |
| CviQI | GTAC | 1 cut(s) | 371 |
| DdeI | CTNAG | 1 cut(s) | 97 |
| DpnI | GATC | 3 cut(s) | 83, 147, 171 |
| DpnII | GATC | 3 cut(s) | 81, 145, 169 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 224 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 224 |
| EaeI | YGGCCR | 5 cut(s) | 10, 60, 160, 252, 312 |
| Eco130I | CCWWGG | 1 cut(s) | 284 |
| Eco72I | CACGTG | 1 cut(s) | 310 |
| EcoT14I | CCWWGG | 1 cut(s) | 284 |
| ErhI | CCWWGG | 1 cut(s) | 284 |
| FaeI | CATG | 2 cut(s) | 202, 217 |
| FaiI | YATR | 5 cut(s) | 59, 87, 200, 215, 268 |
| FatI | CATG | 2 cut(s) | 198, 213 |
| FbaI | TGATCA | 2 cut(s) | 145, 169 |
| Fnu4HI | GCNGC | 1 cut(s) | 163 |
| FokI | GGATG | 2 cut(s) | 17, 301 |
| Fsp4HI | GCNGC | 1 cut(s) | 163 |
| FspBI | CTAG | 1 cut(s) | 379 |
| GlaI | GCGC | 1 cut(s) | 91 |
| GluI | GCNGC | 1 cut(s) | 163 |
| HaeIII | GGCC | 5 cut(s) | 12, 62, 162, 254, 314 |
| HgaI | GACGC | 1 cut(s) | 83 |
| HhaI | GCGC | 1 cut(s) | 92 |
| Hin1I | GRCGYC | 1 cut(s) | 75 |
| Hin1II | CATG | 2 cut(s) | 202, 217 |
| Hin6I | GCGC | 1 cut(s) | 90 |
| HinP1I | GCGC | 1 cut(s) | 90 |
| HincII | GTYRAC | 1 cut(s) | 229 |
| HindII | GTYRAC | 1 cut(s) | 229 |
| HinfI | GANTC | 3 cut(s) | 95, 225, 358 |
| HphI | GGTGA | 2 cut(s) | 83, 155 |
| Hpy166II | GTNNAC | 1 cut(s) | 229 |
| Hpy188I | TCNGA | 4 cut(s) | 46, 121, 136, 338 |
| Hpy188III | TCNNGA | 2 cut(s) | 149, 362 |
| Hpy8I | GTNNAC | 1 cut(s) | 229 |
| HpyAV | CCTTC | 1 cut(s) | 104 |
| HpyCH4IV | ACGT | 3 cut(s) | 41, 219, 309 |
| HpyCH4V | TGCA | 2 cut(s) | 234, 307 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 98 |
| HpyF3I | CTNAG | 1 cut(s) | 97 |
| HpySE526I | ACGT | 3 cut(s) | 41, 219, 309 |
| Hsp92I | GRCGYC | 1 cut(s) | 75 |
| Hsp92II | CATG | 2 cut(s) | 202, 217 |
| HspAI | GCGC | 1 cut(s) | 90 |
| Ksp22I | TGATCA | 2 cut(s) | 145, 169 |
| Kzo9I | GATC | 3 cut(s) | 81, 145, 169 |
| LpnPI | CCDG | 2 cut(s) | 54, 334 |
| LweI | GCATC | 3 cut(s) | 7, 257, 294 |
| MaeI | CTAG | 1 cut(s) | 379 |
| MaeII | ACGT | 3 cut(s) | 41, 219, 309 |
| MaeIII | GTNAC | 1 cut(s) | 71 |
| MalI | GATC | 3 cut(s) | 83, 147, 171 |
| MboI | GATC | 3 cut(s) | 81, 145, 169 |
| MboII | GAAGA | 1 cut(s) | 134 |
| MlsI | TGGCCA | 2 cut(s) | 12, 62 |
| MluCI | AATT | 1 cut(s) | 48 |
| MluNI | TGGCCA | 2 cut(s) | 12, 62 |
| MlyI | GAGTC | 2 cut(s) | 89, 234 |
| MnlI | CCTC | 2 cut(s) | 46, 88 |
| Mox20I | TGGCCA | 2 cut(s) | 12, 62 |
| MscI | TGGCCA | 2 cut(s) | 12, 62 |
| MslI | CAYNNNNRTG | 1 cut(s) | 218 |
| Msp20I | TGGCCA | 2 cut(s) | 12, 62 |
| MspA1I | CMGCKG | 1 cut(s) | 101 |
| MvnI | CGCG | 1 cut(s) | 92 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 98 |
| NdeII | GATC | 3 cut(s) | 81, 145, 169 |
| NlaIII | CATG | 2 cut(s) | 202, 217 |
| NmeAIII | GCCGAG | 1 cut(s) | 340 |
| NmuCI | GTSAC | 1 cut(s) | 71 |
| PfeI | GAWTC | 1 cut(s) | 358 |
| PkrI | GCNGC | 1 cut(s) | 164 |
| PleI | GAGTC | 2 cut(s) | 89, 233 |
| PmaCI | CACGTG | 1 cut(s) | 310 |
| PmlI | CACGTG | 1 cut(s) | 310 |
| PpsI | GAGTC | 2 cut(s) | 89, 233 |
| Ppu21I | YACGTR | 1 cut(s) | 310 |
| PspCI | CACGTG | 1 cut(s) | 310 |
| PvuII | CAGCTG | 1 cut(s) | 101 |
| RsaI | GTAC | 1 cut(s) | 372 |
| RsaNI | GTAC | 1 cut(s) | 371 |
| RseI | CAYNNNNRTG | 1 cut(s) | 218 |
| SatI | GCNGC | 1 cut(s) | 163 |
| Sau3AI | GATC | 3 cut(s) | 81, 145, 169 |
| SchI | GAGTC | 2 cut(s) | 89, 234 |
| SetI | ASST | 8 cut(s) | 44, 103, 115, 130, 222, 263, 312, 353 |
| SfaNI | GCATC | 3 cut(s) | 7, 257, 294 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 218 |
| Sse9I | AATT | 1 cut(s) | 48 |
| SsiI | CCGC | 2 cut(s) | 92, 163 |
| SspMI | CTAG | 1 cut(s) | 379 |
| StyI | CCWWGG | 1 cut(s) | 284 |
| TaiI | ACGT | 3 cut(s) | 44, 222, 312 |
| TaqI | TCGA | 2 cut(s) | 80, 363 |
| TasI | AATT | 1 cut(s) | 48 |
| TatI | WGTACW | 1 cut(s) | 370 |
| TauI | GCSGC | 1 cut(s) | 165 |
| TfiI | GAWTC | 1 cut(s) | 358 |
| TseFI | GTSAC | 1 cut(s) | 71 |
| Tsp45I | GTSAC | 1 cut(s) | 71 |
| XspI | CTAG | 1 cut(s) | 379 |