Rroxscaffold_3G00226870

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0000063
Physical Location & Seq
Forward (+)
10675405 .. 10681013
5609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00226870.1

Sequence Viewer

Length: 672 bp
ATGGCTCCCTTTGGGAAAGAAGGCAAGGCAAAAGAATACTTTGAACGCATTCTTTCATGTCCAATAAATGCCTTTTTACTAAGAATGCAGAAACTGAAATGGTCAAATTGCCTCTTTGCGCCTGTACCAAGTGATTGTGCGAGTCGATCGTCGAGGTCAAACAAAATAAATCTACTTGAACGCACTAAGTCGACCGATGGTAAAGAGAAGTTAACCAATGATCGACTATCGATTTCAATTGGATGCCTCGATCATTCATTACGACTTGTAGGTCCGCGGTCATCTATTACGCCTTGTGATTCATTTGATCTCAATAACGGTTCTCCGAACACGTTATCTTCTATATCGTATGGGCGACATCTTACGGCTACAACATCATCTCATATGTCAATGGAGAAGTGTTTTACCATGTTCTACACCCTCAAACACTTTAAAAATTTTCATTTTTGCTACACCAAATGGAAAGTATCCTTTCTCACAAACAACGAGGAATCGGATCAATGCTTGTTCGATGATGAATGGAAAGGAACACAGGGGCGGTTTCTTAATCTCATGAGATTTGCACTACGGCCTAACACTCAGCCATTTCAAGATGGAACCTTACCAAATGAGTTGTACGGCTACACCCCTTTTTGGTCAATTAGTGGTCGATTACTCAAAGAAATTCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

25.63

Weight (kDa)

9.21

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 270
AccI GTMKAC 1 cut(s) 191
AccII CGCG 1 cut(s) 277
AciI CCGC 3 cut(s) 275, 277, 538
AclWI GGATC 1 cut(s) 504
AcsI RAATTY 2 cut(s) 436, 663
AfaI GTAC 2 cut(s) 126, 617
AfiI CCNNNNNNNGG 1 cut(s) 633
AflIII ACRYGT 1 cut(s) 330
AgsI TTSAA 4 cut(s) 44, 179, 237, 590
AlwI GGATC 1 cut(s) 504
AlwNI CAGNNNCTG 1 cut(s) 94
AoxI GGCC 1 cut(s) 569
ApoI RAATTY 2 cut(s) 436, 663
Asp700I GAANNNNTTC 1 cut(s) 48
AspLEI GCGC 1 cut(s) 121
AspS9I GGNCC 1 cut(s) 272
AvaII GGWCC 1 cut(s) 272
BccI CCATC 2 cut(s) 191, 587
BceAI ACGGC 3 cut(s) 381, 584, 634
BciVI GTATCC 1 cut(s) 478
BfuI GTATCC 1 cut(s) 478
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 1 cut(s) 272
BmiI GGNNCC 2 cut(s) 6, 598
BmsI GCATC 1 cut(s) 233
Bsa29I ATCGAT 1 cut(s) 230
BsaJI CCNNGG 1 cut(s) 275
Bsc4I CCNNNNNNNGG 1 cut(s) 633
BseCI ATCGAT 1 cut(s) 230
BseDI CCNNGG 1 cut(s) 275
BseGI GGATG 1 cut(s) 248
BseLI CCNNNNNNNGG 1 cut(s) 633
BseMII CTCAG 1 cut(s) 593
Bsh1236I CGCG 1 cut(s) 277
Bsh1285I CGRYCG 2 cut(s) 149, 195
BshFI GGCC 1 cut(s) 571
BshVI ATCGAT 1 cut(s) 230
BsiEI CGRYCG 2 cut(s) 149, 195
BslI CCNNNNNNNGG 1 cut(s) 633
BsmI GAATGC 2 cut(s) 48, 90
BsnI GGCC 1 cut(s) 571
Bsp143I GATC 5 cut(s) 146, 220, 250, 307, 496
BspACI CCGC 3 cut(s) 275, 277, 538
BspANI GGCC 1 cut(s) 571
BspCNI CTCAG 1 cut(s) 592
BspDI ATCGAT 1 cut(s) 230
BspFNI CGCG 1 cut(s) 277
BspHI TCATGA 1 cut(s) 552
BspLI GGNNCC 2 cut(s) 6, 598
BspPI GGATC 1 cut(s) 504
BssECI CCNNGG 1 cut(s) 275
BssMI GATC 5 cut(s) 146, 220, 250, 307, 496
Bst4CI ACNGT 1 cut(s) 320
BstDEI CTNAG 3 cut(s) 80, 186, 579
BstDSI CCRYGG 1 cut(s) 275
BstF5I GGATG 1 cut(s) 248
BstFNI CGCG 1 cut(s) 277
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 5 cut(s) 149, 223, 253, 310, 499
BstMBI GATC 5 cut(s) 146, 220, 250, 307, 496
BstMCI CGRYCG 2 cut(s) 149, 195
BstUI CGCG 1 cut(s) 277
Bsu15I ATCGAT 1 cut(s) 230
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 1 cut(s) 571
BsuTUI ATCGAT 1 cut(s) 230
BtgI CCRYGG 1 cut(s) 275
BtsCI GGATG 1 cut(s) 248
CaiI CAGNNNCTG 1 cut(s) 94
CciI TCATGA 1 cut(s) 552
CfoI GCGC 1 cut(s) 121
Cfr13I GGNCC 1 cut(s) 272
Cfr42I CCGCGG 1 cut(s) 278
ClaI ATCGAT 1 cut(s) 230
Csp6I GTAC 2 cut(s) 125, 616
CviAII CATG 3 cut(s) 57, 409, 553
CviJI RGCY 5 cut(s) 5, 368, 571, 583, 621
CviKI_1 RGCY 5 cut(s) 5, 368, 571, 583, 621
CviQI GTAC 2 cut(s) 125, 616
DdeI CTNAG 3 cut(s) 80, 186, 579
DpnI GATC 5 cut(s) 148, 222, 252, 309, 498
DpnII GATC 5 cut(s) 146, 220, 250, 307, 496
DraI TTTAAA 1 cut(s) 433
DrdI GACNNNNNNGTC 1 cut(s) 270
DseDI GACNNNNNNGTC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 272
FaeI CATG 3 cut(s) 60, 412, 556
FaiI YATR 7 cut(s) 58, 344, 351, 384, 386, 410, 554
FatI CATG 3 cut(s) 56, 408, 552
FauNDI CATATG 1 cut(s) 384
FblI GTMKAC 1 cut(s) 191
FokI GGATG 1 cut(s) 255
GlaI GCGC 1 cut(s) 120
HaeIII GGCC 1 cut(s) 571
HhaI GCGC 1 cut(s) 121
Hin1II CATG 3 cut(s) 60, 412, 556
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HincII GTYRAC 2 cut(s) 192, 213
HindII GTYRAC 2 cut(s) 192, 213
HinfI GANTC 3 cut(s) 142, 299, 491
HpaI GTTAAC 1 cut(s) 213
Hpy166II GTNNAC 2 cut(s) 192, 213
Hpy188I TCNGA 2 cut(s) 327, 496
Hpy188III TCNNGA 2 cut(s) 553, 590
Hpy8I GTNNAC 2 cut(s) 192, 213
Hpy99I CGWCG 1 cut(s) 154
HpyAV CCTTC 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 320
HpyCH4IV ACGT 1 cut(s) 332
HpyCH4V TGCA 2 cut(s) 88, 563
HpyF3I CTNAG 3 cut(s) 80, 186, 579
HpySE526I ACGT 1 cut(s) 332
Hsp92II CATG 3 cut(s) 60, 412, 556
HspAI GCGC 1 cut(s) 119
KspAI GTTAAC 1 cut(s) 213
KspI CCGCGG 1 cut(s) 278
Kzo9I GATC 5 cut(s) 146, 220, 250, 307, 496
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 2 cut(s) 135, 518
LweI GCATC 1 cut(s) 233
MaeII ACGT 1 cut(s) 332
MalI GATC 5 cut(s) 148, 222, 252, 309, 498
MboI GATC 5 cut(s) 146, 220, 250, 307, 496
MboII GAAGA 1 cut(s) 330
MfeI CAATTG 1 cut(s) 237
MluCI AATT 5 cut(s) 106, 237, 436, 639, 663
MlyI GAGTC 1 cut(s) 151
MnlI CCTC 5 cut(s) 122, 147, 257, 431, 481
MroXI GAANNNNTTC 1 cut(s) 48
MseI TTAA 3 cut(s) 212, 432, 546
MspA1I CMGCKG 1 cut(s) 277
MunI CAATTG 1 cut(s) 237
Mva1269I GAATGC 2 cut(s) 48, 90
MvnI CGCG 1 cut(s) 277
NdeI CATATG 1 cut(s) 384
NdeII GATC 5 cut(s) 146, 220, 250, 307, 496
NlaIII CATG 3 cut(s) 60, 412, 556
NlaIV GGNNCC 2 cut(s) 6, 598
PagI TCATGA 1 cut(s) 552
PctI GAATGC 2 cut(s) 48, 90
PdmI GAANNNNTTC 1 cut(s) 48
PfeI GAWTC 2 cut(s) 299, 491
Ple19I CGATCG 1 cut(s) 149
PleI GAGTC 1 cut(s) 150
PpsI GAGTC 1 cut(s) 150
PspN4I GGNNCC 2 cut(s) 6, 598
PspPI GGNCC 1 cut(s) 272
PstNI CAGNNNCTG 1 cut(s) 94
PvuI CGATCG 1 cut(s) 149
RsaI GTAC 2 cut(s) 126, 617
RsaNI GTAC 2 cut(s) 125, 616
SacII CCGCGG 1 cut(s) 278
SalI GTCGAC 1 cut(s) 190
SaqAI TTAA 3 cut(s) 212, 432, 546
Sau3AI GATC 5 cut(s) 146, 220, 250, 307, 496
Sau96I GGNCC 1 cut(s) 272
SchI GAGTC 1 cut(s) 151
SetI ASST 4 cut(s) 158, 274, 335, 602
SfaNI GCATC 1 cut(s) 233
Sfr303I CCGCGG 1 cut(s) 278
SgrBI CCGCGG 1 cut(s) 278
SinI GGWCC 1 cut(s) 272
Sse9I AATT 5 cut(s) 106, 237, 436, 639, 663
SsiI CCGC 3 cut(s) 275, 277, 538
TaaI ACNGT 1 cut(s) 320
TaiI ACGT 1 cut(s) 335
TaqI TCGA 8 cut(s) 145, 152, 191, 223, 230, 249, 510, 649
TaqII GACCGA 1 cut(s) 209
TasI AATT 5 cut(s) 106, 237, 436, 639, 663
TfiI GAWTC 2 cut(s) 299, 491
Tru1I TTAA 3 cut(s) 212, 432, 546
Tru9I TTAA 3 cut(s) 212, 432, 546
TspDTI ATGAA 5 cut(s) 45, 246, 291, 431, 531
VpaK11BI GGWCC 1 cut(s) 272
XapI RAATTY 2 cut(s) 436, 663
XmiI GTMKAC 1 cut(s) 191
XmnI GAANNNNTTC 1 cut(s) 48
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.