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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 722 |
| AccII | CGCG | 1 cut(s) | 152 |
| AciI | CCGC | 3 cut(s) | 152, 327, 382 |
| AcoI | YGGCCR | 2 cut(s) | 318, 529 |
| AfaI | GTAC | 2 cut(s) | 525, 742 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 502 |
| AgsI | TTSAA | 2 cut(s) | 425, 583 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 691 |
| AhlI | ACTAGT | 1 cut(s) | 287 |
| AjnI | CCWGG | 1 cut(s) | 13 |
| AluBI | AGCT | 8 cut(s) | 116, 245, 269, 457, 586, 667, 675, 767 |
| AluI | AGCT | 8 cut(s) | 116, 245, 269, 457, 586, 667, 675, 767 |
| Alw21I | GWGCWC | 2 cut(s) | 118, 369 |
| Alw26I | GTCTC | 1 cut(s) | 632 |
| AoxI | GGCC | 2 cut(s) | 318, 529 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 191, 223 |
| AsuHPI | GGTGA | 2 cut(s) | 227, 458 |
| AsuII | TTCGAA | 1 cut(s) | 571 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 732, 765 |
| BanII | GRGCYC | 2 cut(s) | 118, 317 |
| BauI | CACGAG | 1 cut(s) | 368 |
| BbsI | GAAGAC | 2 cut(s) | 204, 519 |
| Bbv12I | GWGCWC | 2 cut(s) | 118, 369 |
| BbvCI | CCTCAGC | 1 cut(s) | 270 |
| BccI | CCATC | 2 cut(s) | 628, 647 |
| BceAI | ACGGC | 1 cut(s) | 340 |
| BciT130I | CCWGG | 1 cut(s) | 15 |
| BclI | TGATCA | 1 cut(s) | 388 |
| BcoDI | GTCTC | 1 cut(s) | 632 |
| BcuI | ACTAGT | 1 cut(s) | 287 |
| BfaI | CTAG | 4 cut(s) | 242, 288, 587, 779 |
| Bme1390I | CCNGG | 1 cut(s) | 15 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 691 |
| BmiI | GGNNCC | 1 cut(s) | 772 |
| BmrFI | CCNGG | 1 cut(s) | 15 |
| BmsI | GCATC | 1 cut(s) | 409 |
| BpiI | GAAGAC | 2 cut(s) | 204, 519 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 68, 100 |
| BpmI | CTGGAG | 1 cut(s) | 285 |
| Bpu10I | CCTNAGC | 2 cut(s) | 270, 501 |
| Bpu14I | TTCGAA | 1 cut(s) | 571 |
| Bsa29I | ATCGAT | 1 cut(s) | 708 |
| BsaBI | GATNNNNATC | 1 cut(s) | 704 |
| BsaJI | CCNNGG | 1 cut(s) | 69 |
| BsaWI | WCCGGW | 1 cut(s) | 737 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 502 |
| Bse1I | ACTGG | 3 cut(s) | 42, 650, 663 |
| Bse3DI | GCAATG | 2 cut(s) | 25, 539 |
| Bse8I | GATNNNNATC | 1 cut(s) | 704 |
| BseBI | CCWGG | 1 cut(s) | 15 |
| BseCI | ATCGAT | 1 cut(s) | 708 |
| BseDI | CCNNGG | 1 cut(s) | 69 |
| BseGI | GGATG | 3 cut(s) | 280, 400, 442 |
| BseJI | GATNNNNATC | 1 cut(s) | 704 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 502 |
| BseMI | GCAATG | 2 cut(s) | 25, 539 |
| BseMII | CTCAG | 2 cut(s) | 261, 702 |
| BseNI | ACTGG | 3 cut(s) | 42, 650, 663 |
| BseX3I | CGGCCG | 1 cut(s) | 318 |
| Bsh1236I | CGCG | 1 cut(s) | 152 |
| Bsh1285I | CGRYCG | 2 cut(s) | 321, 702 |
| BshFI | GGCC | 2 cut(s) | 320, 531 |
| BshVI | ATCGAT | 1 cut(s) | 708 |
| BsiEI | CGRYCG | 2 cut(s) | 321, 702 |
| BsiHKAI | GWGCWC | 2 cut(s) | 118, 369 |
| BsiSI | CCGG | 2 cut(s) | 176, 738 |
| BslFI | GGGAC | 2 cut(s) | 548, 742 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 502 |
| BsmAI | GTCTC | 1 cut(s) | 632 |
| BsmFI | GGGAC | 2 cut(s) | 548, 742 |
| BsnI | GGCC | 2 cut(s) | 320, 531 |
| Bsp119I | TTCGAA | 1 cut(s) | 571 |
| Bsp1286I | GDGCHC | 3 cut(s) | 118, 317, 369 |
| Bsp143I | GATC | 2 cut(s) | 388, 699 |
| BspACI | CCGC | 3 cut(s) | 152, 327, 382 |
| BspANI | GGCC | 2 cut(s) | 320, 531 |
| BspCNI | CTCAG | 2 cut(s) | 262, 701 |
| BspDI | ATCGAT | 1 cut(s) | 708 |
| BspFNI | CGCG | 1 cut(s) | 152 |
| BspLI | GGNNCC | 1 cut(s) | 772 |
| BspQI | GCTCTTC | 2 cut(s) | 69, 106 |
| BspT104I | TTCGAA | 1 cut(s) | 571 |
| BsrDI | GCAATG | 2 cut(s) | 25, 539 |
| BsrI | ACTGG | 3 cut(s) | 42, 650, 663 |
| BssECI | CCNNGG | 1 cut(s) | 69 |
| BssMI | GATC | 2 cut(s) | 388, 699 |
| BssSI | CACGAG | 1 cut(s) | 368 |
| BssT1I | CCWWGG | 1 cut(s) | 69 |
| Bst2BI | CACGAG | 1 cut(s) | 368 |
| Bst2UI | CCWGG | 1 cut(s) | 15 |
| Bst4CI | ACNGT | 1 cut(s) | 351 |
| Bst6I | CTCTTC | 2 cut(s) | 69, 106 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 41 |
| BstBI | TTCGAA | 1 cut(s) | 571 |
| BstC8I | GCNNGC | 2 cut(s) | 669, 673 |
| BstDEI | CTNAG | 4 cut(s) | 126, 270, 501, 688 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 500 |
| BstF5I | GGATG | 3 cut(s) | 280, 400, 442 |
| BstFNI | CGCG | 1 cut(s) | 152 |
| BstKTI | GATC | 2 cut(s) | 391, 702 |
| BstMAI | GTCTC | 1 cut(s) | 632 |
| BstMBI | GATC | 2 cut(s) | 388, 699 |
| BstMCI | CGRYCG | 2 cut(s) | 321, 702 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 41, 528, 681 |
| BstNI | CCWGG | 1 cut(s) | 15 |
| BstSCI | CCNGG | 1 cut(s) | 13 |
| BstUI | CGCG | 1 cut(s) | 152 |
| BstV2I | GAAGAC | 2 cut(s) | 204, 519 |
| BstZI | CGGCCG | 1 cut(s) | 318 |
| Bsu15I | ATCGAT | 1 cut(s) | 708 |
| BsuRI | GGCC | 2 cut(s) | 320, 531 |
| BsuTUI | ATCGAT | 1 cut(s) | 708 |
| BtgZI | GCGATG | 1 cut(s) | 647 |
| BtsCI | GGATG | 3 cut(s) | 280, 400, 442 |
| BtsIMutI | CAGTG | 1 cut(s) | 35 |
| Cac8I | GCNNGC | 2 cut(s) | 669, 673 |
| ClaI | ATCGAT | 1 cut(s) | 708 |
| CseI | GACGC | 1 cut(s) | 158 |
| Csp6I | GTAC | 2 cut(s) | 524, 741 |
| CviAII | CATG | 3 cut(s) | 259, 418, 433 |
| CviQI | GTAC | 2 cut(s) | 524, 741 |
| DdeI | CTNAG | 4 cut(s) | 126, 270, 501, 688 |
| DpnI | GATC | 2 cut(s) | 390, 701 |
| DpnII | GATC | 2 cut(s) | 388, 699 |
| DriI | GACNNNNNGTC | 1 cut(s) | 691 |
| EaeI | YGGCCR | 2 cut(s) | 318, 529 |
| EagI | CGGCCG | 1 cut(s) | 318 |
| Eam1104I | CTCTTC | 2 cut(s) | 69, 106 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 691 |
| EarI | CTCTTC | 2 cut(s) | 69, 106 |
| EciI | GGCGGA | 1 cut(s) | 342 |
| Ecl136II | GAGCTC | 1 cut(s) | 116 |
| EclXI | CGGCCG | 1 cut(s) | 318 |
| Eco130I | CCWWGG | 1 cut(s) | 69 |
| Eco24I | GRGCYC | 2 cut(s) | 118, 317 |
| Eco52I | CGGCCG | 1 cut(s) | 318 |
| Eco53kI | GAGCTC | 1 cut(s) | 116 |
| EcoICRI | GAGCTC | 1 cut(s) | 116 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 500 |
| EcoRII | CCWGG | 1 cut(s) | 13 |
| EcoT14I | CCWWGG | 1 cut(s) | 69 |
| EcoT38I | GRGCYC | 2 cut(s) | 118, 317 |
| ErhI | CCWWGG | 1 cut(s) | 69 |
| FaeI | CATG | 3 cut(s) | 262, 421, 436 |
| FaiI | YATR | 8 cut(s) | 188, 203, 221, 255, 260, 419, 434, 492 |
| FaqI | GGGAC | 2 cut(s) | 548, 742 |
| FatI | CATG | 3 cut(s) | 258, 417, 432 |
| FbaI | TGATCA | 1 cut(s) | 388 |
| FblI | GTMKAC | 1 cut(s) | 722 |
| FokI | GGATG | 3 cut(s) | 287, 387, 449 |
| FriOI | GRGCYC | 2 cut(s) | 118, 317 |
| FspBI | CTAG | 4 cut(s) | 242, 288, 587, 779 |
| GsuI | CTGGAG | 1 cut(s) | 285 |
| HaeIII | GGCC | 2 cut(s) | 320, 531 |
| HapII | CCGG | 2 cut(s) | 176, 738 |
| HgaI | GACGC | 1 cut(s) | 158 |
| Hin1II | CATG | 3 cut(s) | 262, 421, 436 |
| HincII | GTYRAC | 2 cut(s) | 592, 723 |
| HindII | GTYRAC | 2 cut(s) | 592, 723 |
| HinfI | GANTC | 5 cut(s) | 98, 172, 506, 686, 692 |
| HpaI | GTTAAC | 1 cut(s) | 592 |
| HpaII | CCGG | 2 cut(s) | 176, 738 |
| HphI | GGTGA | 2 cut(s) | 227, 458 |
| Hpy166II | GTNNAC | 2 cut(s) | 592, 723 |
| Hpy188I | TCNGA | 3 cut(s) | 355, 511, 691 |
| Hpy188III | TCNNGA | 4 cut(s) | 108, 169, 264, 407 |
| Hpy8I | GTNNAC | 2 cut(s) | 592, 723 |
| Hpy99I | CGWCG | 2 cut(s) | 326, 724 |
| HpyAV | CCTTC | 1 cut(s) | 25 |
| HpyCH4III | ACNGT | 1 cut(s) | 351 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 41, 528, 681 |
| HpyF3I | CTNAG | 4 cut(s) | 126, 270, 501, 688 |
| Hsp92II | CATG | 3 cut(s) | 262, 421, 436 |
| Ksp22I | TGATCA | 1 cut(s) | 388 |
| KspAI | GTTAAC | 1 cut(s) | 592 |
| Kzo9I | GATC | 2 cut(s) | 388, 699 |
| LguI | GCTCTTC | 2 cut(s) | 69, 106 |
| LmnI | GCTCC | 2 cut(s) | 266, 740 |
| LweI | GCATC | 1 cut(s) | 409 |
| MaeI | CTAG | 4 cut(s) | 242, 288, 587, 779 |
| MaeIII | GTNAC | 2 cut(s) | 141, 166 |
| MalI | GATC | 2 cut(s) | 390, 701 |
| MboI | GATC | 2 cut(s) | 388, 699 |
| MboII | GAAGA | 9 cut(s) | 40, 86, 123, 142, 209, 387, 524, 620, 637 |
| MhlI | GDGCHC | 3 cut(s) | 118, 317, 369 |
| MluCI | AATT | 2 cut(s) | 204, 426 |
| MlyI | GAGTC | 2 cut(s) | 680, 701 |
| MnlI | CCTC | 7 cut(s) | 94, 205, 265, 307, 323, 414, 529 |
| MseI | TTAA | 3 cut(s) | 462, 546, 591 |
| MspI | CCGG | 2 cut(s) | 176, 738 |
| MspR9I | CCNGG | 1 cut(s) | 15 |
| MvaI | CCWGG | 1 cut(s) | 15 |
| MvnI | CGCG | 1 cut(s) | 152 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 41, 528, 681 |
| NdeII | GATC | 2 cut(s) | 388, 699 |
| NlaIII | CATG | 3 cut(s) | 262, 421, 436 |
| NlaIV | GGNNCC | 1 cut(s) | 772 |
| NmeAIII | GCCGAG | 2 cut(s) | 296, 557 |
| NmuCI | GTSAC | 2 cut(s) | 141, 166 |
| NspV | TTCGAA | 1 cut(s) | 571 |
| PciSI | GCTCTTC | 2 cut(s) | 69, 106 |
| PfeI | GAWTC | 3 cut(s) | 98, 172, 506 |
| Ple19I | CGATCG | 1 cut(s) | 702 |
| PleI | GAGTC | 2 cut(s) | 680, 700 |
| PpsI | GAGTC | 2 cut(s) | 680, 700 |
| Psp124BI | GAGCTC | 1 cut(s) | 118 |
| Psp6I | CCWGG | 1 cut(s) | 13 |
| PspGI | CCWGG | 1 cut(s) | 13 |
| PspN4I | GGNNCC | 1 cut(s) | 772 |
| PvuI | CGATCG | 1 cut(s) | 702 |
| RsaI | GTAC | 2 cut(s) | 525, 742 |
| RsaNI | GTAC | 2 cut(s) | 524, 741 |
| SacI | GAGCTC | 1 cut(s) | 118 |
| SalI | GTCGAC | 1 cut(s) | 721 |
| SapI | GCTCTTC | 2 cut(s) | 69, 106 |
| SaqAI | TTAA | 3 cut(s) | 462, 546, 591 |
| Sau3AI | GATC | 2 cut(s) | 388, 699 |
| SchI | GAGTC | 2 cut(s) | 680, 701 |
| ScrFI | CCNGG | 1 cut(s) | 15 |
| SduI | GDGCHC | 3 cut(s) | 118, 317, 369 |
| SfaNI | GCATC | 1 cut(s) | 409 |
| SfuI | TTCGAA | 1 cut(s) | 571 |
| SpeI | ACTAGT | 1 cut(s) | 287 |
| Sse9I | AATT | 2 cut(s) | 204, 426 |
| SsiI | CCGC | 3 cut(s) | 152, 327, 382 |
| SspMI | CTAG | 4 cut(s) | 242, 288, 587, 779 |
| SstI | GAGCTC | 1 cut(s) | 118 |
| StyD4I | CCNGG | 1 cut(s) | 13 |
| StyI | CCWWGG | 1 cut(s) | 69 |
| TaaI | ACNGT | 1 cut(s) | 351 |
| TaqI | TCGA | 7 cut(s) | 50, 210, 468, 571, 702, 708, 722 |
| TaqII | GACCGA | 1 cut(s) | 154 |
| TasI | AATT | 2 cut(s) | 204, 426 |
| TfiI | GAWTC | 3 cut(s) | 98, 172, 506 |
| Tru1I | TTAA | 3 cut(s) | 462, 546, 591 |
| Tru9I | TTAA | 3 cut(s) | 462, 546, 591 |
| TscAI | CASTG | 1 cut(s) | 42 |
| TseFI | GTSAC | 2 cut(s) | 141, 166 |
| Tsp45I | GTSAC | 2 cut(s) | 141, 166 |
| TspDTI | ATGAA | 2 cut(s) | 357, 627 |
| TspRI | CASTG | 1 cut(s) | 42 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 500 |
| XmiI | GTMKAC | 1 cut(s) | 722 |
| XspI | CTAG | 4 cut(s) | 242, 288, 587, 779 |