Rmu_sc0004088.1_g000010

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004088.1
OG0000063
Physical Location & Seq
Forward (+)
31462 .. 34328
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004088.1_g000010.1.cds

Sequence Viewer

Length: 2112 bp
atgtccaaggatgagtttgccatatgttacagccaagatcacctttcttcccttgagaacgacatatcaaaacgatgggataaaaaatttgaattggatgtgattctgacttggggaagttttctgatctcttgggacctgaactatggcctcaaaggcatagtgggtcggtatggtgtggaggtctatcttcccaattttgttgcacgtcaatttggcttcgtacagagttgtccggccttgttcttgatgtcgaaaaatcatatctcatcatggagggatggatttacacgaacttcacagtgttcggtcgttggtaattactatgtggagcaatttggcaagtttgagagatccgacctaaaaccttgttgtcctgactatagagccactccgaatttccaagcttggtggtcaacatttattgtgaaaaaacttggaaaagacttggccaagactcaacgtgttgcactacgagagcttccggatttgctcggccccaaggaaagacaaacactaaagaaacgtggttcaatagaaggacacactcgagatgccaagaaagcgaagaagtcctccaatatggtagaaagttccgtctcagacccgaccgataatatggttagtgaggacatatgttttaaggctaatatggatgatggtcacaatgctttagccgaaaatcaaattatgtctgaagctaaagatatggccgaaactggtgacacctcaaccaatagcgtggatttggctgccagcgaaggttcctcaaaagaaaatcaatttgaaagcgacggtcaggagagcaatggcctcattgatctctctttgcctccacttgaaaactccatggttgagattgacatggacgacttgggtgagaaccaactttataacacatcgagcatcggccaacagcttgccatatcaaacaacttttccaaggatgttgaagacaccgatgtacttggccgagaaacactacttacccatcaaacattggttcaggtgggagaatctcggagcagtacaaccctagaattggctcttctcaaccaaactgaaccacatccccctatgttcggaatgcttacctctcctcctaatgacgggaaatgtcaaagtgagcaagctatcgtttgcgctccatcttcggccgagattgtggaccatacaactggtgatcctggtttggacctacttcaattcctagatactctagacaacaccacgagccccgtagaggaaaaacttgaaacagccgaaaccaaaaaggcatttgagacggtcagacagtttttgggttatgatgtgagaatagtgaccaaggctagttttctttcttttaaggaggcggttgaagtacttatttcatccaatcatttctctcaggtagaagcttatgaagttcatgctcgtttggctattgtaaattttagtctctctccttatctagaagcgcaaaaagagtttgaagccggcgagaagttgaaaagtgagtgtgatgacattcgacaatctgcagatcttggccaactccataagttgaatacttctttggacgagggaaggcaaaaagtgcttgatctgaggaagcagttggctgaagctgaagagcaagtcaaagtcacttcggccaccatccgaaccatttttccccaacaagatctcaccaggtatagcttgattttgtcatcggtcaagtcgtataacaaaaggatgggcatcttgaagcgaaaggtcaaccaaggtatgcaaaacttagaaaatgttaaggaagctcttcgttttaagctcagccaaatcaacatcttgaactcagctaaaactcttgttcacttcggccgagattacctcagtcgtctcggccaacacttcttgtttaaccctgccaaaatgaattacttgacttcggccattataattatggttgattcggctggtaccttttatttagctttggccaacgaaagattcaacattttagtcaaccaaatcaacaactctagctcagctgaaactcttgttcacttcggccgagattaccacacttcggtcgagattacctcagttgtctcgatcaacacttcttgtttaactcggccaaaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

703

Amino Acids

78.75

Weight (kDa)

5.31

Isoelectric Point (pI)

35.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 894, 1922
Acc65I GGTACC 1 cut(s) 1943
AccB1I GGYRCC 1 cut(s) 1943
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 1 cut(s) 1355
AclWI GGATC 2 cut(s) 348, 1178
AcsI RAATTY 3 cut(s) 86, 397, 1432
AcuI CTGAAG 3 cut(s) 717, 1626, 1632
AfaI GTAC 5 cut(s) 225, 966, 1030, 1365, 1945
AfiI CCNNNNNNNGG 5 cut(s) 1042, 1082, 1109, 1243, 2053
AflIII ACRYGT 1 cut(s) 463
AjiI CACGTC 1 cut(s) 209
AjnI CCWGG 2 cut(s) 1186, 1673
AjuI GAANNNNNNNTTGG 4 cut(s) 1541, 1573, 1958, 1990
AloI GAACNNNNNNTCC 2 cut(s) 1639, 1671
Alw26I GTCTC 5 cut(s) 604, 1277, 1445, 1868, 2080
AlwI GGATC 2 cut(s) 348, 1178
Ama87I CYCGRG 1 cut(s) 549
Aor13HI TCCGGA 1 cut(s) 484
ApeKI GCWGC 1 cut(s) 752
ApoI RAATTY 3 cut(s) 86, 397, 1432
Asp700I GAANNNNTTC 1 cut(s) 1782
Asp718I GGTACC 1 cut(s) 1943
AspLEI GCGC 2 cut(s) 1145, 1462
AspS9I GGNCC 4 cut(s) 136, 497, 1168, 1195
AsuHPI GGTGA 5 cut(s) 32, 734, 890, 1193, 1663
AvaI CYCGRG 1 cut(s) 549
AvaII GGWCC 3 cut(s) 136, 1168, 1195
BalI TGGCCA 3 cut(s) 452, 1533, 1964
BanI GGYRCC 1 cut(s) 1943
BanII GRGCYC 1 cut(s) 1238
BauI CACGAG 1 cut(s) 1231
BbsI GAAGAC 1 cut(s) 960
BbvI GCAGC 1 cut(s) 739
BccI CCATC 7 cut(s) 69, 275, 653, 999, 1156, 1649, 1714
BciT130I CCWGG 2 cut(s) 1188, 1675
BcoDI GTCTC 5 cut(s) 604, 1277, 1445, 1868, 2080
BfaI CTAG 6 cut(s) 1037, 1211, 1220, 1332, 1454, 2007
BfmI CTRYAG 2 cut(s) 382, 1521
BglI GCCNNNNNGGC 1 cut(s) 156
BglII AGATCT 2 cut(s) 1525, 1666
BisI GCNGC 1 cut(s) 753
BlpI GCTNAGC 2 cut(s) 1796, 2011
BlsI GCNGC 1 cut(s) 754
BmcAI AGTACT 1 cut(s) 1365
Bme1390I CCNGG 2 cut(s) 1188, 1675
Bme18I GGWCC 3 cut(s) 136, 1168, 1195
BmeT110I CYCGRG 1 cut(s) 549
BmgBI CACGTC 1 cut(s) 209
BmgT120I GGNCC 4 cut(s) 136, 497, 1168, 1195
BmiI GGNNCC 4 cut(s) 137, 499, 766, 1945
BmrFI CCNGG 2 cut(s) 1188, 1675
BmsI GCATC 3 cut(s) 544, 915, 1734
BpiI GAAGAC 1 cut(s) 960
BplI GAGNNNNNCTC 4 cut(s) 1839, 1871, 2051, 2083
Bpu1102I GCTNAGC 2 cut(s) 1796, 2011
BpuEI CTTGAG 1 cut(s) 74
BsaBI GATNNNNATC 1 cut(s) 1724
BsaJI CCNNGG 6 cut(s) 6, 501, 849, 942, 1326, 1747
BsaWI WCCGGW 1 cut(s) 484
BsaXI ACNNNNNCTCC 2 cut(s) 1084, 1114
Bsc4I CCNNNNNNNGG 5 cut(s) 1042, 1082, 1109, 1243, 2053
Bse118I RCCGGY 1 cut(s) 1478
Bse1I ACTGG 2 cut(s) 724, 1183
Bse3DI GCAATG 1 cut(s) 814
Bse8I GATNNNNATC 1 cut(s) 1724
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 2 cut(s) 1188, 1675
BseDI CCNNGG 6 cut(s) 6, 501, 849, 942, 1326, 1747
BseGI GGATG 9 cut(s) 16, 103, 286, 661, 952, 1069, 1373, 1641, 1725
BseJI GATNNNNATC 1 cut(s) 1724
BseLI CCNNNNNNNGG 5 cut(s) 1042, 1082, 1109, 1243, 2053
BseMI GCAATG 1 cut(s) 814
BseMII CTCAG 8 cut(s) 615, 1403, 1580, 1810, 1833, 1870, 2025, 2082
BseNI ACTGG 2 cut(s) 724, 1183
BseRI GAGGAG 1 cut(s) 1089
BseX3I CGGCCG 3 cut(s) 1155, 1843, 2035
BseXI GCAGC 1 cut(s) 739
Bsh1285I CGRYCG 6 cut(s) 312, 612, 1158, 1846, 2038, 2058
BshNI GGYRCC 1 cut(s) 1943
BsiEI CGRYCG 6 cut(s) 312, 612, 1158, 1846, 2038, 2058
BsiHKCI CYCGRG 1 cut(s) 549
BsiSI CCGG 3 cut(s) 236, 485, 1479
BslFI GGGAC 1 cut(s) 149
BslI CCNNNNNNNGG 5 cut(s) 1042, 1082, 1109, 1243, 2053
BsmAI GTCTC 5 cut(s) 604, 1277, 1445, 1868, 2080
BsmBI CGTCTC 3 cut(s) 604, 1277, 1868
BsmFI GGGAC 1 cut(s) 149
BsmI GAATGC 1 cut(s) 1092
BsoBI CYCGRG 1 cut(s) 549
Bsp1286I GDGCHC 1 cut(s) 1238
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 9 cut(s) 37, 126, 353, 820, 1183, 1525, 1585, 1666, 2079
Bsp1720I GCTNAGC 2 cut(s) 1796, 2011
Bsp19I CCATGG 1 cut(s) 849
BspACI CCGC 1 cut(s) 1355
BspCNI CTCAG 8 cut(s) 614, 1402, 1581, 1809, 1832, 1869, 2024, 2081
BspEI TCCGGA 1 cut(s) 484
BspLI GGNNCC 4 cut(s) 137, 499, 766, 1945
BspMAI CTGCAG 1 cut(s) 1525
BspPI GGATC 2 cut(s) 348, 1178
BspQI GCTCTTC 3 cut(s) 1053, 1608, 1788
BspT107I GGYRCC 1 cut(s) 1943
BsrDI GCAATG 1 cut(s) 814
BsrFI RCCGGY 1 cut(s) 1478
BsrI ACTGG 2 cut(s) 724, 1183
BssAI RCCGGY 1 cut(s) 1478
BssECI CCNNGG 6 cut(s) 6, 501, 849, 942, 1326, 1747
BssMI GATC 9 cut(s) 37, 126, 353, 820, 1183, 1525, 1585, 1666, 2079
BssSI CACGAG 1 cut(s) 1231
BssT1I CCWWGG 6 cut(s) 6, 501, 849, 942, 1326, 1747
Bst2BI CACGAG 1 cut(s) 1231
Bst2UI CCWGG 2 cut(s) 1188, 1675
Bst4CI ACNGT 4 cut(s) 303, 797, 1288, 1296
Bst6I CTCTTC 3 cut(s) 1053, 1608, 1788
BstAPI GCANNNNNTGC 1 cut(s) 1579
BstC8I GCNNGC 4 cut(s) 757, 921, 1131, 1480
BstDEI CTNAG 9 cut(s) 601, 1389, 1589, 1762, 1796, 1819, 1856, 2011, 2068
BstDSI CCRYGG 1 cut(s) 849
BstF5I GGATG 9 cut(s) 16, 103, 286, 661, 952, 1069, 1373, 1641, 1725
BstHHI GCGC 2 cut(s) 1145, 1462
BstKTI GATC 9 cut(s) 40, 129, 356, 823, 1186, 1528, 1588, 1669, 2082
BstMAI GTCTC 5 cut(s) 604, 1277, 1445, 1868, 2080
BstMBI GATC 9 cut(s) 37, 126, 353, 820, 1183, 1525, 1585, 1666, 2079
BstMCI CGRYCG 6 cut(s) 312, 612, 1158, 1846, 2038, 2058
BstMWI GCNNNNNNNGC 4 cut(s) 156, 563, 1421, 1579
BstNI CCWGG 2 cut(s) 1188, 1675
BstSCI CCNGG 2 cut(s) 1186, 1673
BstSFI CTRYAG 2 cut(s) 382, 1521
BstV1I GCAGC 1 cut(s) 739
BstV2I GAAGAC 1 cut(s) 960
BstX2I RGATCY 3 cut(s) 353, 1525, 1666
BstXI CCANNNNNNTGG 2 cut(s) 742, 1178
BstYI RGATCY 3 cut(s) 353, 1525, 1666
BstZI CGGCCG 3 cut(s) 1155, 1843, 2035
BtgI CCRYGG 1 cut(s) 849
BtrI CACGTC 1 cut(s) 209
BtsCI GGATG 9 cut(s) 16, 103, 286, 661, 952, 1069, 1373, 1641, 1725
BtsIMutI CAGTG 1 cut(s) 308
Cac8I GCNNGC 4 cut(s) 757, 921, 1131, 1480
CfoI GCGC 2 cut(s) 1145, 1462
Cfr10I RCCGGY 1 cut(s) 1478
Cfr13I GGNCC 4 cut(s) 136, 497, 1168, 1195
CsiI ACCWGGT 1 cut(s) 1673
Csp6I GTAC 5 cut(s) 224, 965, 1029, 1364, 1944
CspCI CAANNNNNGTGG 2 cut(s) 392, 427
CviAII CATG 4 cut(s) 273, 850, 865, 1412
CviQI GTAC 5 cut(s) 224, 965, 1029, 1364, 1944
DdeI CTNAG 9 cut(s) 601, 1389, 1589, 1762, 1796, 1819, 1856, 2011, 2068
DpnI GATC 9 cut(s) 39, 128, 355, 822, 1185, 1527, 1587, 1668, 2081
DpnII GATC 9 cut(s) 37, 126, 353, 820, 1183, 1525, 1585, 1666, 2079
EagI CGGCCG 3 cut(s) 1155, 1843, 2035
Eam1104I CTCTTC 3 cut(s) 1053, 1608, 1788
EarI CTCTTC 3 cut(s) 1053, 1608, 1788
EclXI CGGCCG 3 cut(s) 1155, 1843, 2035
Eco130I CCWWGG 6 cut(s) 6, 501, 849, 942, 1326, 1747
Eco24I GRGCYC 1 cut(s) 1238
Eco47I GGWCC 3 cut(s) 136, 1168, 1195
Eco52I CGGCCG 3 cut(s) 1155, 1843, 2035
Eco57I CTGAAG 3 cut(s) 717, 1626, 1632
Eco88I CYCGRG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 136
EcoRII CCWGG 2 cut(s) 1186, 1673
EcoT14I CCWWGG 6 cut(s) 6, 501, 849, 942, 1326, 1747
EcoT38I GRGCYC 1 cut(s) 1238
ErhI CCWWGG 6 cut(s) 6, 501, 849, 942, 1326, 1747
Esp3I CGTCTC 3 cut(s) 604, 1277, 1868
FaeI CATG 4 cut(s) 276, 853, 868, 1415
FalI AAGNNNNNCTT 2 cut(s) 27, 59
FaqI GGGAC 1 cut(s) 149
FatI CATG 4 cut(s) 272, 849, 864, 1411
FauNDI CATATG 2 cut(s) 23, 635
Fnu4HI GCNGC 1 cut(s) 753
FokI GGATG 9 cut(s) 23, 110, 293, 668, 959, 1056, 1360, 1628, 1732
FriOI GRGCYC 1 cut(s) 1238
Fsp4HI GCNGC 1 cut(s) 753
FspBI CTAG 6 cut(s) 1037, 1211, 1220, 1332, 1454, 2007
GlaI GCGC 2 cut(s) 1144, 1461
GluI GCNGC 1 cut(s) 753
HapII CCGG 3 cut(s) 236, 485, 1479
HhaI GCGC 2 cut(s) 1145, 1462
Hin1II CATG 4 cut(s) 276, 853, 868, 1415
Hin6I GCGC 2 cut(s) 1143, 1460
HinP1I GCGC 2 cut(s) 1143, 1460
HincII GTYRAC 3 cut(s) 417, 1744, 1990
HindII GTYRAC 3 cut(s) 417, 1744, 1990
HindIII AAGCTT 2 cut(s) 405, 1398
HinfI GANTC 5 cut(s) 103, 457, 1016, 1934, 1974
HpaII CCGG 3 cut(s) 236, 485, 1479
HphI GGTGA 5 cut(s) 32, 734, 890, 1193, 1663
Hpy166II GTNNAC 6 cut(s) 417, 1168, 1744, 1837, 1990, 2029
Hpy8I GTNNAC 6 cut(s) 417, 1168, 1744, 1837, 1990, 2029
Hpy99I CGWCG 1 cut(s) 797
HpyAV CCTTC 3 cut(s) 533, 755, 1563
HpyCH4III ACNGT 4 cut(s) 303, 797, 1288, 1296
HpyCH4IV ACGT 3 cut(s) 208, 463, 526
HpyCH4V TGCA 4 cut(s) 206, 470, 1523, 1756
HpyF10VI GCNNNNNNNGC 4 cut(s) 156, 563, 1421, 1579
HpyF3I CTNAG 9 cut(s) 601, 1389, 1589, 1762, 1796, 1819, 1856, 2011, 2068
HpySE526I ACGT 3 cut(s) 208, 463, 526
Hsp92II CATG 4 cut(s) 276, 853, 868, 1415
HspAI GCGC 2 cut(s) 1143, 1460
Kpn2I TCCGGA 1 cut(s) 484
KpnI GGTACC 1 cut(s) 1947
KroI GCCGGC 1 cut(s) 1478
KroNI GCCGGC 1 cut(s) 1480
Kzo9I GATC 9 cut(s) 37, 126, 353, 820, 1183, 1525, 1585, 1666, 2079
LguI GCTCTTC 3 cut(s) 1053, 1608, 1788
LmnI GCTCC 3 cut(s) 331, 1023, 1150
Lsp1109I GCAGC 1 cut(s) 739
LweI GCATC 3 cut(s) 544, 915, 1734
MabI ACCWGGT 1 cut(s) 1673
MaeI CTAG 6 cut(s) 1037, 1211, 1220, 1332, 1454, 2007
MaeII ACGT 3 cut(s) 208, 463, 526
MaeIII GTNAC 5 cut(s) 26, 662, 722, 1321, 1627
MalI GATC 9 cut(s) 39, 128, 355, 822, 1185, 1527, 1587, 1668, 2081
MboI GATC 9 cut(s) 37, 126, 353, 820, 1183, 1525, 1585, 1666, 2079
MboII GAAGA 8 cut(s) 39, 182, 580, 965, 1040, 1143, 1625, 1775
MflI RGATCY 3 cut(s) 353, 1525, 1666
MhlI GDGCHC 1 cut(s) 1238
MlsI TGGCCA 3 cut(s) 452, 1533, 1964
MluNI TGGCCA 3 cut(s) 452, 1533, 1964
MlyI GAGTC 1 cut(s) 451
MmeI TCCRAC 1 cut(s) 381
Mox20I TGGCCA 3 cut(s) 452, 1533, 1964
MroI TCCGGA 1 cut(s) 484
MroNI GCCGGC 1 cut(s) 1478
MroXI GAANNNNTTC 1 cut(s) 1782
MscI TGGCCA 3 cut(s) 452, 1533, 1964
MseI TTAA 6 cut(s) 642, 1347, 1773, 1791, 1884, 2096
Msp20I TGGCCA 3 cut(s) 452, 1533, 1964
MspA1I CMGCKG 1 cut(s) 2015
MspI CCGG 3 cut(s) 236, 485, 1479
MspR9I CCNGG 2 cut(s) 1188, 1675
Mva1269I GAATGC 1 cut(s) 1092
MvaI CCWGG 2 cut(s) 1188, 1675
MwoI GCNNNNNNNGC 4 cut(s) 156, 563, 1421, 1579
NaeI GCCGGC 1 cut(s) 1480
NcoI CCATGG 1 cut(s) 849
NdeI CATATG 2 cut(s) 23, 635
NdeII GATC 9 cut(s) 37, 126, 353, 820, 1183, 1525, 1585, 1666, 2079
NgoMIV GCCGGC 1 cut(s) 1478
NlaIII CATG 4 cut(s) 276, 853, 868, 1415
NlaIV GGNNCC 4 cut(s) 137, 499, 766, 1945
NmeAIII GCCGAG 7 cut(s) 474, 998, 1183, 1845, 1871, 2063, 2080
NmuCI GTSAC 4 cut(s) 662, 722, 1321, 1627
PaeR7I CTCGAG 1 cut(s) 549
PciSI GCTCTTC 3 cut(s) 1053, 1608, 1788
PcsI WCGNNNNNNNCGW 1 cut(s) 1703
PctI GAATGC 1 cut(s) 1092
PdiI GCCGGC 1 cut(s) 1480
PdmI GAANNNNTTC 1 cut(s) 1782
PfeI GAWTC 4 cut(s) 103, 1016, 1934, 1974
PkrI GCNGC 1 cut(s) 754
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
PpuMI RGGWCCY 1 cut(s) 136
PsiI TTATAA 2 cut(s) 894, 1922
Psp5II RGGWCCY 1 cut(s) 136
Psp6I CCWGG 2 cut(s) 1186, 1673
PspGI CCWGG 2 cut(s) 1186, 1673
PspN4I GGNNCC 4 cut(s) 137, 499, 766, 1945
PspPI GGNCC 4 cut(s) 136, 497, 1168, 1195
PspPPI RGGWCCY 1 cut(s) 136
PstI CTGCAG 1 cut(s) 1525
PsuI RGATCY 3 cut(s) 353, 1525, 1666
PvuII CAGCTG 1 cut(s) 2015
RsaI GTAC 5 cut(s) 225, 966, 1030, 1365, 1945
RsaNI GTAC 5 cut(s) 224, 965, 1029, 1364, 1944
SapI GCTCTTC 3 cut(s) 1053, 1608, 1788
SaqAI TTAA 6 cut(s) 642, 1347, 1773, 1791, 1884, 2096
SatI GCNGC 1 cut(s) 753
Sau3AI GATC 9 cut(s) 37, 126, 353, 820, 1183, 1525, 1585, 1666, 2079
Sau96I GGNCC 4 cut(s) 136, 497, 1168, 1195
ScaI AGTACT 1 cut(s) 1365
SchI GAGTC 1 cut(s) 451
ScrFI CCNGG 2 cut(s) 1188, 1675
SduI GDGCHC 1 cut(s) 1238
SexAI ACCWGGT 1 cut(s) 1673
SfaNI GCATC 3 cut(s) 544, 915, 1734
SfcI CTRYAG 2 cut(s) 382, 1521
Sfr274I CTCGAG 1 cut(s) 549
SinI GGWCC 3 cut(s) 136, 1168, 1195
SlaI CTCGAG 1 cut(s) 549
SmlI CTYRAG 2 cut(s) 53, 549
SmoI CTYRAG 2 cut(s) 53, 549
SsiI CCGC 1 cut(s) 1355
SspMI CTAG 6 cut(s) 1037, 1211, 1220, 1332, 1454, 2007
StyD4I CCNGG 2 cut(s) 1186, 1673
StyI CCWWGG 6 cut(s) 6, 501, 849, 942, 1326, 1747
TaaI ACNGT 4 cut(s) 303, 797, 1288, 1296
TaiI ACGT 3 cut(s) 211, 466, 529
TaqI TCGA 6 cut(s) 254, 550, 902, 1513, 2058, 2078
TaqII GACCGA 4 cut(s) 298, 626, 1687, 2044
TatI WGTACW 3 cut(s) 964, 1028, 1363
TfiI GAWTC 4 cut(s) 103, 1016, 1934, 1974
Tru1I TTAA 6 cut(s) 642, 1347, 1773, 1791, 1884, 2096
Tru9I TTAA 6 cut(s) 642, 1347, 1773, 1791, 1884, 2096
TscAI CASTG 1 cut(s) 308
TseFI GTSAC 4 cut(s) 662, 722, 1321, 1627
TseI GCWGC 1 cut(s) 752
Tsp45I GTSAC 4 cut(s) 662, 722, 1321, 1627
TspDTI ATGAA 4 cut(s) 1362, 1400, 1419, 1913
TspGWI ACGGA 1 cut(s) 586
TspRI CASTG 1 cut(s) 308
VpaK11BI GGWCC 3 cut(s) 136, 1168, 1195
XapI RAATTY 3 cut(s) 86, 397, 1432
XbaI TCTAGA 2 cut(s) 1219, 1453
XcmI CCANNNNNNNNNTGG 1 cut(s) 1924
XhoI CTCGAG 1 cut(s) 549
XmnI GAANNNNTTC 1 cut(s) 1782
XspI CTAG 6 cut(s) 1037, 1211, 1220, 1332, 1454, 2007
ZrmI AGTACT 1 cut(s) 1365
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.