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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 503 |
| AccII | CGCG | 1 cut(s) | 215 |
| AciI | CCGC | 2 cut(s) | 92, 338 |
| AclWI | GGATC | 2 cut(s) | 159, 628 |
| AcoI | YGGCCR | 1 cut(s) | 514 |
| AcsI | RAATTY | 1 cut(s) | 415 |
| AcuI | CTGAAG | 1 cut(s) | 615 |
| AfaI | GTAC | 1 cut(s) | 348 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 85, 226 |
| AgsI | TTSAA | 9 cut(s) | 8, 188, 239, 266, 331, 344, 458, 532, 574 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 524, 556, 566, 598 |
| AluBI | AGCT | 5 cut(s) | 40, 74, 235, 383, 593 |
| AluI | AGCT | 5 cut(s) | 40, 74, 235, 383, 593 |
| Alw21I | GWGCWC | 1 cut(s) | 109 |
| Alw26I | GTCTC | 1 cut(s) | 428 |
| Alw44I | GTGCAC | 1 cut(s) | 105 |
| AlwI | GGATC | 2 cut(s) | 159, 628 |
| AoxI | GGCC | 1 cut(s) | 514 |
| ApaLI | GTGCAC | 1 cut(s) | 105 |
| ApoI | RAATTY | 1 cut(s) | 415 |
| AsuC2I | CCSGG | 2 cut(s) | 149, 221 |
| AsuHPI | GGTGA | 1 cut(s) | 41 |
| BaeGI | GKGCMC | 1 cut(s) | 109 |
| BalI | TGGCCA | 1 cut(s) | 516 |
| BanII | GRGCYC | 1 cut(s) | 221 |
| BbsI | GAAGAC | 2 cut(s) | 102, 539 |
| Bbv12I | GWGCWC | 1 cut(s) | 109 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 249, 283 |
| BcnI | CCSGG | 2 cut(s) | 149, 221 |
| BcoDI | GTCTC | 1 cut(s) | 428 |
| BfaI | CTAG | 4 cut(s) | 203, 315, 437, 628 |
| BmcAI | AGTACT | 1 cut(s) | 348 |
| Bme1390I | CCNGG | 2 cut(s) | 149, 221 |
| BmrFI | CCNGG | 2 cut(s) | 149, 221 |
| BmsI | GCATC | 1 cut(s) | 79 |
| BpiI | GAAGAC | 2 cut(s) | 102, 539 |
| BpmI | CTGGAG | 1 cut(s) | 197 |
| Bpu10I | CCTNAGC | 1 cut(s) | 84 |
| BpuEI | CTTGAG | 1 cut(s) | 357 |
| BpuMI | CCSGG | 2 cut(s) | 149, 221 |
| BsaJI | CCNNGG | 1 cut(s) | 309 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 85, 226 |
| Bse118I | RCCGGY | 1 cut(s) | 461 |
| Bse1I | ACTGG | 1 cut(s) | 499 |
| BseDI | CCNNGG | 1 cut(s) | 309 |
| BseGI | GGATG | 2 cut(s) | 25, 94 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 85, 226 |
| BseMII | CTCAG | 1 cut(s) | 84 |
| BseNI | ACTGG | 1 cut(s) | 499 |
| BseSI | GKGCMC | 1 cut(s) | 109 |
| BseYI | CCCAGC | 1 cut(s) | 128 |
| Bsh1236I | CGCG | 1 cut(s) | 215 |
| BshFI | GGCC | 1 cut(s) | 516 |
| BsiHKAI | GWGCWC | 1 cut(s) | 109 |
| BsiSI | CCGG | 3 cut(s) | 149, 221, 462 |
| BslFI | GGGAC | 2 cut(s) | 131, 391 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 85, 226 |
| BsmAI | GTCTC | 1 cut(s) | 428 |
| BsmFI | GGGAC | 2 cut(s) | 131, 391 |
| BsnI | GGCC | 1 cut(s) | 516 |
| Bsp1286I | GDGCHC | 2 cut(s) | 109, 221 |
| Bsp143I | GATC | 4 cut(s) | 151, 166, 508, 620 |
| BspACI | CCGC | 2 cut(s) | 92, 338 |
| BspANI | GGCC | 1 cut(s) | 516 |
| BspCNI | CTCAG | 1 cut(s) | 83 |
| BspFNI | CGCG | 1 cut(s) | 215 |
| BspPI | GGATC | 2 cut(s) | 159, 628 |
| BspQI | GCTCTTC | 1 cut(s) | 591 |
| BsrFI | RCCGGY | 1 cut(s) | 461 |
| BsrI | ACTGG | 1 cut(s) | 499 |
| BssAI | RCCGGY | 1 cut(s) | 461 |
| BssECI | CCNNGG | 1 cut(s) | 309 |
| BssMI | GATC | 4 cut(s) | 151, 166, 508, 620 |
| Bst6I | CTCTTC | 1 cut(s) | 591 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 562 |
| BstC8I | GCNNGC | 1 cut(s) | 217 |
| BstDEI | CTNAG | 2 cut(s) | 70, 84 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 83 |
| BstF5I | GGATG | 2 cut(s) | 25, 94 |
| BstFNI | CGCG | 1 cut(s) | 215 |
| BstKTI | GATC | 4 cut(s) | 154, 169, 511, 623 |
| BstMAI | GTCTC | 1 cut(s) | 428 |
| BstMBI | GATC | 4 cut(s) | 151, 166, 508, 620 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 71, 80, 89, 562 |
| BstSCI | CCNGG | 2 cut(s) | 147, 219 |
| BstSLI | GKGCMC | 1 cut(s) | 109 |
| BstUI | CGCG | 1 cut(s) | 215 |
| BstV2I | GAAGAC | 2 cut(s) | 102, 539 |
| BstX2I | RGATCY | 1 cut(s) | 620 |
| BstYI | RGATCY | 1 cut(s) | 620 |
| BsuRI | GGCC | 1 cut(s) | 516 |
| BtsCI | GGATG | 2 cut(s) | 25, 94 |
| Cac8I | GCNNGC | 1 cut(s) | 217 |
| Cfr10I | RCCGGY | 1 cut(s) | 461 |
| Csp6I | GTAC | 1 cut(s) | 347 |
| CviAII | CATG | 2 cut(s) | 16, 395 |
| CviQI | GTAC | 1 cut(s) | 347 |
| DdeI | CTNAG | 2 cut(s) | 70, 84 |
| DpnI | GATC | 4 cut(s) | 153, 168, 510, 622 |
| DpnII | GATC | 4 cut(s) | 151, 166, 508, 620 |
| EaeI | YGGCCR | 1 cut(s) | 514 |
| Eam1104I | CTCTTC | 1 cut(s) | 591 |
| EarI | CTCTTC | 1 cut(s) | 591 |
| Eco24I | GRGCYC | 1 cut(s) | 221 |
| Eco57I | CTGAAG | 1 cut(s) | 615 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 83 |
| EcoT38I | GRGCYC | 1 cut(s) | 221 |
| FaeI | CATG | 2 cut(s) | 19, 398 |
| FaiI | YATR | 6 cut(s) | 17, 294, 387, 396, 486, 525 |
| FaqI | GGGAC | 2 cut(s) | 131, 391 |
| FatI | CATG | 2 cut(s) | 15, 394 |
| FblI | GTMKAC | 1 cut(s) | 503 |
| FokI | GGATG | 2 cut(s) | 32, 101 |
| FriOI | GRGCYC | 1 cut(s) | 221 |
| FspBI | CTAG | 4 cut(s) | 203, 315, 437, 628 |
| GsaI | CCCAGC | 1 cut(s) | 132 |
| GsuI | CTGGAG | 1 cut(s) | 197 |
| HaeIII | GGCC | 1 cut(s) | 516 |
| HapII | CCGG | 3 cut(s) | 149, 221, 462 |
| Hin1II | CATG | 2 cut(s) | 19, 398 |
| HindIII | AAGCTT | 2 cut(s) | 233, 381 |
| HinfI | GANTC | 1 cut(s) | 266 |
| HpaII | CCGG | 3 cut(s) | 149, 221, 462 |
| HphI | GGTGA | 1 cut(s) | 41 |
| Hpy166II | GTNNAC | 2 cut(s) | 107, 504 |
| Hpy188I | TCNGA | 1 cut(s) | 275 |
| Hpy188III | TCNNGA | 4 cut(s) | 116, 176, 194, 618 |
| Hpy8I | GTNNAC | 2 cut(s) | 107, 504 |
| HpyAV | CCTTC | 2 cut(s) | 250, 546 |
| HpyCH4V | TGCA | 2 cut(s) | 107, 413 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 71, 80, 89, 562 |
| HpyF3I | CTNAG | 2 cut(s) | 70, 84 |
| Hsp92II | CATG | 2 cut(s) | 19, 398 |
| Kzo9I | GATC | 4 cut(s) | 151, 166, 508, 620 |
| LguI | GCTCTTC | 1 cut(s) | 591 |
| LpnPI | CCDG | 8 cut(s) | 50, 142, 161, 162, 234, 445, 475, 512 |
| LweI | GCATC | 1 cut(s) | 79 |
| MaeI | CTAG | 4 cut(s) | 203, 315, 437, 628 |
| MaeIII | GTNAC | 2 cut(s) | 180, 304 |
| MalI | GATC | 4 cut(s) | 153, 168, 510, 622 |
| MboI | GATC | 4 cut(s) | 151, 166, 508, 620 |
| MboII | GAAGA | 3 cut(s) | 107, 544, 608 |
| MfeI | CAATTG | 1 cut(s) | 581 |
| MflI | RGATCY | 1 cut(s) | 620 |
| MhlI | GDGCHC | 2 cut(s) | 109, 221 |
| MlsI | TGGCCA | 1 cut(s) | 516 |
| MluCI | AATT | 6 cut(s) | 9, 188, 278, 415, 470, 581 |
| MluNI | TGGCCA | 1 cut(s) | 516 |
| MnlI | CCTC | 5 cut(s) | 112, 220, 304, 328, 541 |
| Mox20I | TGGCCA | 1 cut(s) | 516 |
| MscI | TGGCCA | 1 cut(s) | 516 |
| Msp20I | TGGCCA | 1 cut(s) | 516 |
| MspI | CCGG | 3 cut(s) | 149, 221, 462 |
| MspR9I | CCNGG | 2 cut(s) | 149, 221 |
| MunI | CAATTG | 1 cut(s) | 581 |
| MvnI | CGCG | 1 cut(s) | 215 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 71, 80, 89, 562 |
| NciI | CCSGG | 2 cut(s) | 149, 221 |
| NdeII | GATC | 4 cut(s) | 151, 166, 508, 620 |
| NlaIII | CATG | 2 cut(s) | 19, 398 |
| PciSI | GCTCTTC | 1 cut(s) | 591 |
| PfeI | GAWTC | 1 cut(s) | 266 |
| PfoI | TCCNGGA | 1 cut(s) | 147 |
| PspFI | CCCAGC | 1 cut(s) | 128 |
| PsuI | RGATCY | 1 cut(s) | 620 |
| RsaI | GTAC | 1 cut(s) | 348 |
| RsaNI | GTAC | 1 cut(s) | 347 |
| SapI | GCTCTTC | 1 cut(s) | 591 |
| Sau3AI | GATC | 4 cut(s) | 151, 166, 508, 620 |
| ScaI | AGTACT | 1 cut(s) | 348 |
| ScrFI | CCNGG | 2 cut(s) | 149, 221 |
| SduI | GDGCHC | 2 cut(s) | 109, 221 |
| SetI | ASST | 6 cut(s) | 42, 76, 81, 237, 385, 595 |
| SfaNI | GCATC | 1 cut(s) | 79 |
| SmlI | CTYRAG | 1 cut(s) | 372 |
| SmoI | CTYRAG | 1 cut(s) | 372 |
| Sse9I | AATT | 6 cut(s) | 9, 188, 278, 415, 470, 581 |
| SsiI | CCGC | 2 cut(s) | 92, 338 |
| SspMI | CTAG | 4 cut(s) | 203, 315, 437, 628 |
| StyD4I | CCNGG | 2 cut(s) | 147, 219 |
| TaqI | TCGA | 4 cut(s) | 51, 115, 195, 588 |
| TaqII | GACCGA | 1 cut(s) | 259 |
| TasI | AATT | 6 cut(s) | 9, 188, 278, 415, 470, 581 |
| TatI | WGTACW | 1 cut(s) | 346 |
| TfiI | GAWTC | 1 cut(s) | 266 |
| TspDTI | ATGAA | 3 cut(s) | 383, 402, 512 |
| VneI | GTGCAC | 1 cut(s) | 105 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 83 |
| XapI | RAATTY | 1 cut(s) | 415 |
| XmiI | GTMKAC | 1 cut(s) | 503 |
| XspI | CTAG | 4 cut(s) | 203, 315, 437, 628 |
| ZrmI | AGTACT | 1 cut(s) | 348 |