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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 123 |
| AciI | CCGC | 4 cut(s) | 121, 202, 518, 780 |
| AclWI | GGATC | 1 cut(s) | 346 |
| AcoI | YGGCCR | 5 cut(s) | 60, 417, 519, 558, 619 |
| AfaI | GTAC | 1 cut(s) | 765 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 742, 796, 863 |
| AgeI | ACCGGT | 1 cut(s) | 277 |
| AgsI | TTSAA | 1 cut(s) | 786 |
| AhlI | ACTAGT | 1 cut(s) | 527 |
| AjnI | CCWGG | 1 cut(s) | 789 |
| AluBI | AGCT | 3 cut(s) | 485, 509, 697 |
| AluI | AGCT | 3 cut(s) | 485, 509, 697 |
| AlwI | GGATC | 1 cut(s) | 346 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 47 |
| AoxI | GGCC | 6 cut(s) | 60, 109, 417, 519, 558, 619 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 431, 463 |
| AsiGI | ACCGGT | 1 cut(s) | 277 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 781 |
| AspLEI | GCGC | 1 cut(s) | 119 |
| AsuC2I | CCSGG | 2 cut(s) | 7, 237 |
| AsuHPI | GGTGA | 4 cut(s) | 375, 400, 467, 698 |
| BalI | TGGCCA | 1 cut(s) | 621 |
| BbsI | GAAGAC | 2 cut(s) | 444, 759 |
| BbvCI | CCTCAGC | 1 cut(s) | 510 |
| BccI | CCATC | 1 cut(s) | 611 |
| BceAI | ACGGC | 1 cut(s) | 47 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 39, 73, 200, 234 |
| BciT130I | CCWGG | 1 cut(s) | 791 |
| BciVI | GTATCC | 1 cut(s) | 861 |
| BclI | TGATCA | 2 cut(s) | 130, 628 |
| BcnI | CCSGG | 2 cut(s) | 7, 237 |
| BcuI | ACTAGT | 1 cut(s) | 527 |
| BfaI | CTAG | 2 cut(s) | 482, 528 |
| BfoI | RGCGCY | 1 cut(s) | 120 |
| BfuI | GTATCC | 1 cut(s) | 861 |
| BglII | AGATCT | 1 cut(s) | 104 |
| BisI | GCNGC | 1 cut(s) | 519 |
| BlsI | GCNGC | 1 cut(s) | 520 |
| Bme1390I | CCNGG | 3 cut(s) | 7, 237, 791 |
| BmrFI | CCNGG | 3 cut(s) | 7, 237, 791 |
| BmsI | GCATC | 2 cut(s) | 505, 523 |
| BpiI | GAAGAC | 2 cut(s) | 444, 759 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 308, 340 |
| BpmI | CTGGAG | 2 cut(s) | 525, 812 |
| Bpu10I | CCTNAGC | 3 cut(s) | 113, 510, 741 |
| BpuMI | CCSGG | 2 cut(s) | 7, 237 |
| BsaJI | CCNNGG | 2 cut(s) | 657, 789 |
| BsaWI | WCCGGW | 1 cut(s) | 277 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 838, 868 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 742, 796, 863 |
| Bse118I | RCCGGY | 1 cut(s) | 277 |
| Bse3DI | GCAATG | 1 cut(s) | 265 |
| BseBI | CCWGG | 1 cut(s) | 791 |
| BseDI | CCNNGG | 2 cut(s) | 657, 789 |
| BseGI | GGATG | 3 cut(s) | 520, 682, 751 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 742, 796, 863 |
| BseMI | GCAATG | 1 cut(s) | 265 |
| BseMII | CTCAG | 4 cut(s) | 104, 501, 639, 741 |
| BseRI | GAGGAG | 2 cut(s) | 633, 843 |
| BseX3I | CGGCCG | 4 cut(s) | 60, 417, 519, 558 |
| BsgI | GTGCAG | 1 cut(s) | 33 |
| Bsh1236I | CGCG | 1 cut(s) | 123 |
| Bsh1285I | CGRYCG | 4 cut(s) | 63, 420, 522, 561 |
| BshFI | GGCC | 6 cut(s) | 62, 111, 419, 521, 560, 621 |
| BshTI | ACCGGT | 1 cut(s) | 277 |
| BsiEI | CGRYCG | 4 cut(s) | 63, 420, 522, 561 |
| BsiSI | CCGG | 4 cut(s) | 7, 236, 278, 416 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 742, 796, 863 |
| BsmI | GAATGC | 1 cut(s) | 846 |
| BsnI | GGCC | 6 cut(s) | 62, 111, 419, 521, 560, 621 |
| Bsp143I | GATC | 4 cut(s) | 104, 130, 338, 628 |
| Bsp19I | CCATGG | 1 cut(s) | 657 |
| BspACI | CCGC | 4 cut(s) | 121, 202, 518, 780 |
| BspANI | GGCC | 6 cut(s) | 62, 111, 419, 521, 560, 621 |
| BspCNI | CTCAG | 4 cut(s) | 105, 502, 640, 740 |
| BspFNI | CGCG | 1 cut(s) | 123 |
| BspPI | GGATC | 1 cut(s) | 346 |
| BspQI | GCTCTTC | 2 cut(s) | 309, 807 |
| BsrDI | GCAATG | 1 cut(s) | 265 |
| BsrFI | RCCGGY | 1 cut(s) | 277 |
| BssAI | RCCGGY | 1 cut(s) | 277 |
| BssECI | CCNNGG | 2 cut(s) | 657, 789 |
| BssMI | GATC | 4 cut(s) | 104, 130, 338, 628 |
| BssT1I | CCWWGG | 1 cut(s) | 657 |
| Bst2UI | CCWGG | 1 cut(s) | 791 |
| Bst4CI | ACNGT | 1 cut(s) | 591 |
| Bst6I | CTCTTC | 2 cut(s) | 309, 807 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 281 |
| BstC8I | GCNNGC | 1 cut(s) | 121 |
| BstDEI | CTNAG | 7 cut(s) | 113, 285, 309, 510, 648, 727, 741 |
| BstDSI | CCRYGG | 1 cut(s) | 657 |
| BstEII | GGTNACC | 1 cut(s) | 406 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 740, 861 |
| BstF5I | GGATG | 3 cut(s) | 520, 682, 751 |
| BstFNI | CGCG | 1 cut(s) | 123 |
| BstH2I | RGCGCY | 1 cut(s) | 120 |
| BstHHI | GCGC | 1 cut(s) | 119 |
| BstKTI | GATC | 4 cut(s) | 107, 133, 341, 631 |
| BstMBI | GATC | 4 cut(s) | 104, 130, 338, 628 |
| BstMCI | CGRYCG | 4 cut(s) | 63, 420, 522, 561 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 281, 515, 728, 737 |
| BstNI | CCWGG | 1 cut(s) | 791 |
| BstPI | GGTNACC | 1 cut(s) | 406 |
| BstSCI | CCNGG | 3 cut(s) | 5, 235, 789 |
| BstUI | CGCG | 1 cut(s) | 123 |
| BstV2I | GAAGAC | 2 cut(s) | 444, 759 |
| BstX2I | RGATCY | 1 cut(s) | 104 |
| BstYI | RGATCY | 1 cut(s) | 104 |
| BstZI | CGGCCG | 4 cut(s) | 60, 417, 519, 558 |
| BsuI | GTATCC | 1 cut(s) | 861 |
| BsuRI | GGCC | 6 cut(s) | 62, 111, 419, 521, 560, 621 |
| BtgI | CCRYGG | 1 cut(s) | 657 |
| BtsCI | GGATG | 3 cut(s) | 520, 682, 751 |
| BtsI | GCAGTG | 1 cut(s) | 45 |
| BtsIMutI | CAGTG | 1 cut(s) | 45 |
| Cac8I | GCNNGC | 1 cut(s) | 121 |
| CaiI | CAGNNNCTG | 1 cut(s) | 47 |
| CfoI | GCGC | 1 cut(s) | 119 |
| Cfr10I | RCCGGY | 1 cut(s) | 277 |
| Csp6I | GTAC | 1 cut(s) | 764 |
| CspAI | ACCGGT | 1 cut(s) | 277 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 143, 178 |
| CviAII | CATG | 6 cut(s) | 24, 391, 499, 608, 658, 673 |
| CviQI | GTAC | 1 cut(s) | 764 |
| DdeI | CTNAG | 7 cut(s) | 113, 285, 309, 510, 648, 727, 741 |
| DpnI | GATC | 4 cut(s) | 106, 132, 340, 630 |
| DpnII | GATC | 4 cut(s) | 104, 130, 338, 628 |
| EaeI | YGGCCR | 5 cut(s) | 60, 417, 519, 558, 619 |
| EagI | CGGCCG | 4 cut(s) | 60, 417, 519, 558 |
| Eam1104I | CTCTTC | 2 cut(s) | 309, 807 |
| EarI | CTCTTC | 2 cut(s) | 309, 807 |
| EclXI | CGGCCG | 4 cut(s) | 60, 417, 519, 558 |
| Eco130I | CCWWGG | 1 cut(s) | 657 |
| Eco52I | CGGCCG | 4 cut(s) | 60, 417, 519, 558 |
| Eco91I | GGTNACC | 1 cut(s) | 406 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 740, 861 |
| EcoO65I | GGTNACC | 1 cut(s) | 406 |
| EcoRII | CCWGG | 1 cut(s) | 789 |
| EcoT14I | CCWWGG | 1 cut(s) | 657 |
| ErhI | CCWWGG | 1 cut(s) | 657 |
| FaeI | CATG | 6 cut(s) | 27, 394, 502, 611, 661, 676 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 561, 593 |
| FatI | CATG | 6 cut(s) | 23, 390, 498, 607, 657, 672 |
| FauI | CCCGC | 1 cut(s) | 128 |
| FbaI | TGATCA | 2 cut(s) | 130, 628 |
| Fnu4HI | GCNGC | 1 cut(s) | 519 |
| FokI | GGATG | 3 cut(s) | 527, 689, 758 |
| Fsp4HI | GCNGC | 1 cut(s) | 519 |
| FspBI | CTAG | 2 cut(s) | 482, 528 |
| GlaI | GCGC | 1 cut(s) | 118 |
| GluI | GCNGC | 1 cut(s) | 519 |
| GsuI | CTGGAG | 2 cut(s) | 525, 812 |
| HaeII | RGCGCY | 1 cut(s) | 120 |
| HaeIII | GGCC | 6 cut(s) | 62, 111, 419, 521, 560, 621 |
| HapII | CCGG | 4 cut(s) | 7, 236, 278, 416 |
| HhaI | GCGC | 1 cut(s) | 119 |
| Hin1II | CATG | 6 cut(s) | 27, 394, 502, 611, 661, 676 |
| Hin6I | GCGC | 1 cut(s) | 117 |
| HinP1I | GCGC | 1 cut(s) | 117 |
| HincII | GTYRAC | 1 cut(s) | 168 |
| HindII | GTYRAC | 1 cut(s) | 168 |
| HinfI | GANTC | 3 cut(s) | 10, 82, 770 |
| HpaII | CCGG | 4 cut(s) | 7, 236, 278, 416 |
| HphI | GGTGA | 4 cut(s) | 375, 400, 467, 698 |
| Hpy166II | GTNNAC | 3 cut(s) | 39, 168, 764 |
| Hpy188I | TCNGA | 3 cut(s) | 81, 595, 839 |
| Hpy188III | TCNNGA | 5 cut(s) | 178, 348, 504, 647, 774 |
| Hpy8I | GTNNAC | 3 cut(s) | 39, 168, 764 |
| HpyAV | CCTTC | 3 cut(s) | 364, 563, 837 |
| HpyCH4III | ACNGT | 1 cut(s) | 591 |
| HpyCH4V | TGCA | 1 cut(s) | 50 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 281, 515, 728, 737 |
| HpyF3I | CTNAG | 7 cut(s) | 113, 285, 309, 510, 648, 727, 741 |
| Hsp92II | CATG | 6 cut(s) | 27, 394, 502, 611, 661, 676 |
| HspAI | GCGC | 1 cut(s) | 117 |
| Ksp22I | TGATCA | 2 cut(s) | 130, 628 |
| Kzo9I | GATC | 4 cut(s) | 104, 130, 338, 628 |
| LguI | GCTCTTC | 2 cut(s) | 309, 807 |
| LmnI | GCTCC | 1 cut(s) | 506 |
| LweI | GCATC | 2 cut(s) | 505, 523 |
| MaeI | CTAG | 2 cut(s) | 482, 528 |
| MaeIII | GTNAC | 3 cut(s) | 64, 381, 406 |
| MalI | GATC | 4 cut(s) | 106, 132, 340, 630 |
| MboI | GATC | 4 cut(s) | 104, 130, 338, 628 |
| MboII | GAAGA | 8 cut(s) | 12, 193, 280, 326, 363, 449, 764, 794 |
| MflI | RGATCY | 1 cut(s) | 104 |
| MlsI | TGGCCA | 1 cut(s) | 621 |
| MluCI | AATT | 2 cut(s) | 302, 444 |
| MluNI | TGGCCA | 1 cut(s) | 621 |
| MlyI | GAGTC | 1 cut(s) | 76 |
| Mox20I | TGGCCA | 1 cut(s) | 621 |
| MroXI | GAANNNNTTC | 1 cut(s) | 781 |
| MscI | TGGCCA | 1 cut(s) | 621 |
| MseI | TTAA | 1 cut(s) | 883 |
| Msp20I | TGGCCA | 1 cut(s) | 621 |
| MspI | CCGG | 4 cut(s) | 7, 236, 278, 416 |
| MspR9I | CCNGG | 3 cut(s) | 7, 237, 791 |
| Mva1269I | GAATGC | 1 cut(s) | 846 |
| MvaI | CCWGG | 1 cut(s) | 791 |
| MvnI | CGCG | 1 cut(s) | 123 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 281, 515, 728, 737 |
| NciI | CCSGG | 2 cut(s) | 7, 237 |
| NcoI | CCATGG | 1 cut(s) | 657 |
| NdeII | GATC | 4 cut(s) | 104, 130, 338, 628 |
| NlaIII | CATG | 6 cut(s) | 27, 394, 502, 611, 661, 676 |
| NmuCI | GTSAC | 3 cut(s) | 64, 381, 406 |
| PciSI | GCTCTTC | 2 cut(s) | 309, 807 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 772 |
| PctI | GAATGC | 1 cut(s) | 846 |
| PdmI | GAANNNNTTC | 1 cut(s) | 781 |
| PfeI | GAWTC | 2 cut(s) | 10, 770 |
| PfoI | TCCNGGA | 1 cut(s) | 5 |
| PinAI | ACCGGT | 1 cut(s) | 277 |
| PkrI | GCNGC | 1 cut(s) | 520 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| Psp6I | CCWGG | 1 cut(s) | 789 |
| PspEI | GGTNACC | 1 cut(s) | 406 |
| PspGI | CCWGG | 1 cut(s) | 789 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 346, 378 |
| PstNI | CAGNNNCTG | 1 cut(s) | 47 |
| PsuI | RGATCY | 1 cut(s) | 104 |
| RsaI | GTAC | 1 cut(s) | 765 |
| RsaNI | GTAC | 1 cut(s) | 764 |
| SapI | GCTCTTC | 2 cut(s) | 309, 807 |
| SaqAI | TTAA | 1 cut(s) | 883 |
| SatI | GCNGC | 1 cut(s) | 519 |
| Sau3AI | GATC | 4 cut(s) | 104, 130, 338, 628 |
| SchI | GAGTC | 1 cut(s) | 76 |
| ScrFI | CCNGG | 3 cut(s) | 7, 237, 791 |
| SfaNI | GCATC | 2 cut(s) | 505, 523 |
| SpeI | ACTAGT | 1 cut(s) | 527 |
| Sse9I | AATT | 2 cut(s) | 302, 444 |
| SsiI | CCGC | 4 cut(s) | 121, 202, 518, 780 |
| SspMI | CTAG | 2 cut(s) | 482, 528 |
| StyD4I | CCNGG | 3 cut(s) | 5, 235, 789 |
| StyI | CCWWGG | 1 cut(s) | 657 |
| TaaI | ACNGT | 1 cut(s) | 591 |
| TaqI | TCGA | 6 cut(s) | 210, 290, 450, 708, 775, 874 |
| TaqII | GACCGA | 1 cut(s) | 394 |
| TasI | AATT | 2 cut(s) | 302, 444 |
| TauI | GCSGC | 1 cut(s) | 521 |
| TfiI | GAWTC | 2 cut(s) | 10, 770 |
| Tru1I | TTAA | 1 cut(s) | 883 |
| Tru9I | TTAA | 1 cut(s) | 883 |
| TscAI | CASTG | 1 cut(s) | 52 |
| TseFI | GTSAC | 3 cut(s) | 64, 381, 406 |
| Tsp45I | GTSAC | 3 cut(s) | 64, 381, 406 |
| TspDTI | ATGAA | 3 cut(s) | 12, 476, 597 |
| TspRI | CASTG | 1 cut(s) | 52 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 740, 861 |
| XmnI | GAANNNNTTC | 1 cut(s) | 781 |
| XspI | CTAG | 2 cut(s) | 482, 528 |