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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 443 |
| AciI | CCGC | 1 cut(s) | 278 |
| AclI | AACGTT | 1 cut(s) | 11 |
| AcoI | YGGCCR | 1 cut(s) | 558 |
| AcsI | RAATTY | 1 cut(s) | 355 |
| AcuI | CTGAAG | 2 cut(s) | 533, 674 |
| AfaI | GTAC | 1 cut(s) | 288 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 166 |
| AflIII | ACRYGT | 1 cut(s) | 729 |
| AgsI | TTSAA | 7 cut(s) | 32, 128, 179, 271, 284, 329, 415 |
| AhlI | ACTAGT | 1 cut(s) | 254 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 562, 594 |
| AluBI | AGCT | 5 cut(s) | 85, 175, 323, 533, 606 |
| AluI | AGCT | 5 cut(s) | 85, 175, 323, 533, 606 |
| Alw26I | GTCTC | 4 cut(s) | 245, 368, 639, 717 |
| AoxI | GGCC | 1 cut(s) | 558 |
| ApoI | RAATTY | 1 cut(s) | 355 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 705 |
| AspLEI | GCGC | 1 cut(s) | 68 |
| AspS9I | GGNCC | 1 cut(s) | 91 |
| AsuHPI | GGTGA | 1 cut(s) | 116 |
| AvaII | GGWCC | 1 cut(s) | 91 |
| BalI | TGGCCA | 1 cut(s) | 560 |
| BccI | CCATC | 1 cut(s) | 572 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 189, 223 |
| BclI | TGATCA | 1 cut(s) | 49 |
| BcoDI | GTCTC | 4 cut(s) | 245, 368, 639, 717 |
| BcuI | ACTAGT | 1 cut(s) | 254 |
| BfaI | CTAG | 3 cut(s) | 143, 164, 255 |
| BglII | AGATCT | 1 cut(s) | 589 |
| BlpI | GCTNAGC | 1 cut(s) | 81 |
| BmcAI | AGTACT | 1 cut(s) | 288 |
| Bme18I | GGWCC | 1 cut(s) | 91 |
| BmgT120I | GGNCC | 1 cut(s) | 91 |
| BmsI | GCATC | 1 cut(s) | 388 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 81 |
| BpuEI | CTTGAG | 1 cut(s) | 224 |
| BsaI | GGTCTC | 1 cut(s) | 717 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 166 |
| Bse1I | ACTGG | 2 cut(s) | 93, 439 |
| BseGI | GGATG | 2 cut(s) | 564, 648 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BseMII | CTCAG | 3 cut(s) | 72, 240, 326 |
| BseNI | ACTGG | 2 cut(s) | 93, 439 |
| BshFI | GGCC | 1 cut(s) | 560 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 166 |
| BsmAI | GTCTC | 4 cut(s) | 245, 368, 639, 717 |
| BsnI | GGCC | 1 cut(s) | 560 |
| Bso31I | GGTCTC | 1 cut(s) | 717 |
| Bsp143I | GATC | 5 cut(s) | 49, 106, 508, 589, 667 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 81 |
| BspACI | CCGC | 1 cut(s) | 278 |
| BspANI | GGCC | 1 cut(s) | 560 |
| BspCNI | CTCAG | 3 cut(s) | 73, 241, 325 |
| BspTNI | GGTCTC | 1 cut(s) | 717 |
| BsrI | ACTGG | 2 cut(s) | 93, 439 |
| BssMI | GATC | 5 cut(s) | 49, 106, 508, 589, 667 |
| Bst4CI | ACNGT | 1 cut(s) | 219 |
| Bst6I | CTCTTC | 3 cut(s) | 25, 637, 720 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 502 |
| BstC8I | GCNNGC | 2 cut(s) | 38, 403 |
| BstDEI | CTNAG | 4 cut(s) | 81, 249, 312, 593 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 164 |
| BstF5I | GGATG | 2 cut(s) | 564, 648 |
| BstHHI | GCGC | 1 cut(s) | 68 |
| BstKTI | GATC | 5 cut(s) | 52, 109, 511, 592, 670 |
| BstMAI | GTCTC | 4 cut(s) | 245, 368, 639, 717 |
| BstMBI | GATC | 5 cut(s) | 49, 106, 508, 589, 667 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 344, 502, 603 |
| BstNSI | RCATGY | 2 cut(s) | 40, 733 |
| BstX2I | RGATCY | 1 cut(s) | 589 |
| BstYI | RGATCY | 1 cut(s) | 589 |
| BsuRI | GGCC | 1 cut(s) | 560 |
| BtsCI | GGATG | 2 cut(s) | 564, 648 |
| Cac8I | GCNNGC | 2 cut(s) | 38, 403 |
| CfoI | GCGC | 1 cut(s) | 68 |
| Cfr13I | GGNCC | 1 cut(s) | 91 |
| Csp6I | GTAC | 1 cut(s) | 287 |
| CviAII | CATG | 3 cut(s) | 37, 335, 730 |
| CviQI | GTAC | 1 cut(s) | 287 |
| DdeI | CTNAG | 4 cut(s) | 81, 249, 312, 593 |
| DpnI | GATC | 5 cut(s) | 51, 108, 510, 591, 669 |
| DpnII | GATC | 5 cut(s) | 49, 106, 508, 589, 667 |
| EaeI | YGGCCR | 1 cut(s) | 558 |
| Eam1104I | CTCTTC | 3 cut(s) | 25, 637, 720 |
| EarI | CTCTTC | 3 cut(s) | 25, 637, 720 |
| Eco31I | GGTCTC | 1 cut(s) | 717 |
| Eco47I | GGWCC | 1 cut(s) | 91 |
| Eco57I | CTGAAG | 2 cut(s) | 533, 674 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 164 |
| FaeI | CATG | 3 cut(s) | 40, 338, 733 |
| FaiI | YATR | 9 cut(s) | 38, 336, 426, 465, 603, 631, 633, 677, 731 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 590, 622 |
| FatI | CATG | 3 cut(s) | 36, 334, 729 |
| FbaI | TGATCA | 1 cut(s) | 49 |
| FblI | GTMKAC | 1 cut(s) | 443 |
| FokI | GGATG | 2 cut(s) | 551, 635 |
| FspBI | CTAG | 3 cut(s) | 143, 164, 255 |
| GlaI | GCGC | 1 cut(s) | 67 |
| HaeIII | GGCC | 1 cut(s) | 560 |
| HhaI | GCGC | 1 cut(s) | 68 |
| Hin1II | CATG | 3 cut(s) | 40, 338, 733 |
| Hin6I | GCGC | 1 cut(s) | 66 |
| HinP1I | GCGC | 1 cut(s) | 66 |
| HindIII | AAGCTT | 2 cut(s) | 173, 321 |
| HinfI | GANTC | 1 cut(s) | 206 |
| HphI | GGTGA | 1 cut(s) | 116 |
| Hpy166II | GTNNAC | 3 cut(s) | 15, 444, 458 |
| Hpy188I | TCNGA | 5 cut(s) | 8, 215, 513, 569, 727 |
| Hpy188III | TCNNGA | 3 cut(s) | 110, 134, 652 |
| Hpy8I | GTNNAC | 3 cut(s) | 15, 444, 458 |
| Hpy99I | CGWCG | 1 cut(s) | 668 |
| HpyAV | CCTTC | 3 cut(s) | 26, 190, 277 |
| HpyCH4III | ACNGT | 1 cut(s) | 219 |
| HpyCH4IV | ACGT | 2 cut(s) | 11, 663 |
| HpyCH4V | TGCA | 3 cut(s) | 353, 401, 679 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 344, 502, 603 |
| HpyF3I | CTNAG | 4 cut(s) | 81, 249, 312, 593 |
| HpySE526I | ACGT | 2 cut(s) | 11, 663 |
| Hsp92II | CATG | 3 cut(s) | 40, 338, 733 |
| HspAI | GCGC | 1 cut(s) | 66 |
| Ksp22I | TGATCA | 1 cut(s) | 49 |
| Kzo9I | GATC | 5 cut(s) | 49, 106, 508, 589, 667 |
| LmnI | GCTCC | 1 cut(s) | 73 |
| LpnPI | CCDG | 5 cut(s) | 74, 299, 387, 452, 665 |
| LweI | GCATC | 1 cut(s) | 388 |
| MaeI | CTAG | 3 cut(s) | 143, 164, 255 |
| MaeII | ACGT | 2 cut(s) | 11, 663 |
| MaeIII | GTNAC | 2 cut(s) | 120, 550 |
| MalI | GATC | 5 cut(s) | 51, 108, 510, 591, 669 |
| MboI | GATC | 5 cut(s) | 49, 106, 508, 589, 667 |
| MboII | GAAGA | 5 cut(s) | 12, 526, 654, 698, 707 |
| MfeI | CAATTG | 1 cut(s) | 521 |
| MflI | RGATCY | 1 cut(s) | 589 |
| MlsI | TGGCCA | 1 cut(s) | 560 |
| MluCI | AATT | 3 cut(s) | 128, 355, 521 |
| MluNI | TGGCCA | 1 cut(s) | 560 |
| MlyI | GAGTC | 1 cut(s) | 215 |
| MnlI | CCTC | 6 cut(s) | 28, 51, 160, 268, 272, 733 |
| Mox20I | TGGCCA | 1 cut(s) | 560 |
| MroXI | GAANNNNTTC | 1 cut(s) | 705 |
| MscI | TGGCCA | 1 cut(s) | 560 |
| MseI | TTAA | 3 cut(s) | 470, 546, 696 |
| Msp20I | TGGCCA | 1 cut(s) | 560 |
| MunI | CAATTG | 1 cut(s) | 521 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 344, 502, 603 |
| NdeII | GATC | 5 cut(s) | 49, 106, 508, 589, 667 |
| NlaIII | CATG | 3 cut(s) | 40, 338, 733 |
| NspI | RCATGY | 2 cut(s) | 40, 733 |
| PaeI | GCATGC | 1 cut(s) | 40 |
| PciI | ACATGT | 1 cut(s) | 729 |
| PdmI | GAANNNNTTC | 1 cut(s) | 705 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| PscI | ACATGT | 1 cut(s) | 729 |
| Psp1406I | AACGTT | 1 cut(s) | 11 |
| PspPI | GGNCC | 1 cut(s) | 91 |
| PsuI | RGATCY | 1 cut(s) | 589 |
| RsaI | GTAC | 1 cut(s) | 288 |
| RsaNI | GTAC | 1 cut(s) | 287 |
| SaqAI | TTAA | 3 cut(s) | 470, 546, 696 |
| Sau3AI | GATC | 5 cut(s) | 49, 106, 508, 589, 667 |
| Sau96I | GGNCC | 1 cut(s) | 91 |
| ScaI | AGTACT | 1 cut(s) | 288 |
| SchI | GAGTC | 1 cut(s) | 215 |
| SfaNI | GCATC | 1 cut(s) | 388 |
| SinI | GGWCC | 1 cut(s) | 91 |
| SmlI | CTYRAG | 1 cut(s) | 203 |
| SmoI | CTYRAG | 1 cut(s) | 203 |
| SpeI | ACTAGT | 1 cut(s) | 254 |
| SphI | GCATGC | 1 cut(s) | 40 |
| Sse9I | AATT | 3 cut(s) | 128, 355, 521 |
| SsiI | CCGC | 1 cut(s) | 278 |
| SspMI | CTAG | 3 cut(s) | 143, 164, 255 |
| TaaI | ACNGT | 1 cut(s) | 219 |
| TaiI | ACGT | 2 cut(s) | 14, 666 |
| TaqI | TCGA | 1 cut(s) | 666 |
| TaqII | GACCGA | 4 cut(s) | 199, 542, 610, 699 |
| TasI | AATT | 3 cut(s) | 128, 355, 521 |
| TatI | WGTACW | 1 cut(s) | 286 |
| Tru1I | TTAA | 3 cut(s) | 470, 546, 696 |
| Tru9I | TTAA | 3 cut(s) | 470, 546, 696 |
| TspDTI | ATGAA | 1 cut(s) | 323 |
| VpaK11BI | GGWCC | 1 cut(s) | 91 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 164 |
| XapI | RAATTY | 1 cut(s) | 355 |
| XceI | RCATGY | 2 cut(s) | 40, 733 |
| XmiI | GTMKAC | 1 cut(s) | 443 |
| XmnI | GAANNNNTTC | 1 cut(s) | 705 |
| XspI | CTAG | 3 cut(s) | 143, 164, 255 |
| ZrmI | AGTACT | 1 cut(s) | 288 |