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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 233 |
| AccII | CGCG | 1 cut(s) | 559 |
| AciI | CCGC | 3 cut(s) | 270, 557, 602 |
| AcoI | YGGCCR | 6 cut(s) | 21, 117, 235, 462, 606, 658 |
| AcsI | RAATTY | 2 cut(s) | 230, 467 |
| AfaI | GTAC | 1 cut(s) | 128 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 233, 405 |
| AgsI | TTSAA | 3 cut(s) | 13, 43, 518 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 443, 475 |
| Alw26I | GTCTC | 3 cut(s) | 134, 152, 170 |
| AoxI | GGCC | 7 cut(s) | 21, 82, 117, 235, 462, 606, 658 |
| ApeKI | GCWGC | 3 cut(s) | 346, 443, 488 |
| ApoI | RAATTY | 2 cut(s) | 230, 467 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 151, 183 |
| AspS9I | GGNCC | 2 cut(s) | 82, 578 |
| AsuNHI | GCTAGC | 1 cut(s) | 665 |
| AvaII | GGWCC | 1 cut(s) | 578 |
| AxyI | CCTNAGG | 1 cut(s) | 34 |
| BbvI | GCAGC | 3 cut(s) | 358, 430, 475 |
| BccI | CCATC | 1 cut(s) | 617 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 549, 583 |
| BcoDI | GTCTC | 3 cut(s) | 134, 152, 170 |
| BfaI | CTAG | 4 cut(s) | 254, 623, 666, 670 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 440 |
| BisI | GCNGC | 4 cut(s) | 347, 444, 489, 602 |
| BlsI | GCNGC | 4 cut(s) | 348, 445, 490, 603 |
| Bme18I | GGWCC | 1 cut(s) | 578 |
| BmgT120I | GGNCC | 2 cut(s) | 82, 578 |
| BmiI | GGNNCC | 1 cut(s) | 555 |
| BmrI | ACTGGG | 1 cut(s) | 363 |
| BmtI | GCTAGC | 1 cut(s) | 669 |
| BmuI | ACTGGG | 1 cut(s) | 363 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 149, 181 |
| BpmI | CTGGAG | 1 cut(s) | 295 |
| BpuEI | CTTGAG | 2 cut(s) | 305, 317 |
| BsaJI | CCNNGG | 1 cut(s) | 120 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 233, 405 |
| Bse118I | RCCGGY | 1 cut(s) | 604 |
| Bse1I | ACTGG | 1 cut(s) | 358 |
| Bse21I | CCTNAGG | 1 cut(s) | 34 |
| Bse3DI | GCAATG | 2 cut(s) | 264, 453 |
| BseDI | CCNNGG | 1 cut(s) | 120 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 233, 405 |
| BseMI | GCAATG | 2 cut(s) | 264, 453 |
| BseMII | CTCAG | 2 cut(s) | 48, 147 |
| BseNI | ACTGG | 1 cut(s) | 358 |
| BseRI | GAGGAG | 1 cut(s) | 22 |
| BseX3I | CGGCCG | 1 cut(s) | 658 |
| BseXI | GCAGC | 3 cut(s) | 358, 430, 475 |
| Bsh1236I | CGCG | 1 cut(s) | 559 |
| Bsh1285I | CGRYCG | 3 cut(s) | 156, 174, 661 |
| BshFI | GGCC | 7 cut(s) | 23, 84, 119, 237, 464, 608, 660 |
| BsiEI | CGRYCG | 3 cut(s) | 156, 174, 661 |
| BsiSI | CCGG | 1 cut(s) | 605 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 233, 405 |
| BsmAI | GTCTC | 3 cut(s) | 134, 152, 170 |
| BsnI | GGCC | 7 cut(s) | 23, 84, 119, 237, 464, 608, 660 |
| Bsp143I | GATC | 2 cut(s) | 316, 654 |
| BspACI | CCGC | 3 cut(s) | 270, 557, 602 |
| BspANI | GGCC | 7 cut(s) | 23, 84, 119, 237, 464, 608, 660 |
| BspCNI | CTCAG | 2 cut(s) | 47, 146 |
| BspFNI | CGCG | 1 cut(s) | 559 |
| BspHI | TCATGA | 1 cut(s) | 246 |
| BspLI | GGNNCC | 1 cut(s) | 555 |
| BspOI | GCTAGC | 1 cut(s) | 669 |
| BsrDI | GCAATG | 2 cut(s) | 264, 453 |
| BsrFI | RCCGGY | 1 cut(s) | 604 |
| BsrI | ACTGG | 1 cut(s) | 358 |
| BssAI | RCCGGY | 1 cut(s) | 604 |
| BssECI | CCNNGG | 1 cut(s) | 120 |
| BssMI | GATC | 2 cut(s) | 316, 654 |
| BssT1I | CCWWGG | 1 cut(s) | 120 |
| Bst6I | CTCTTC | 1 cut(s) | 172 |
| BstC8I | GCNNGC | 2 cut(s) | 606, 667 |
| BstDEI | CTNAG | 3 cut(s) | 34, 133, 205 |
| BstFNI | CGCG | 1 cut(s) | 559 |
| BstKTI | GATC | 2 cut(s) | 319, 657 |
| BstMAI | GTCTC | 3 cut(s) | 134, 152, 170 |
| BstMBI | GATC | 2 cut(s) | 316, 654 |
| BstMCI | CGRYCG | 3 cut(s) | 156, 174, 661 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 431, 440, 452, 461, 657, 666 |
| BstUI | CGCG | 1 cut(s) | 559 |
| BstV1I | GCAGC | 3 cut(s) | 358, 430, 475 |
| BstZI | CGGCCG | 1 cut(s) | 658 |
| Bsu36I | CCTNAGG | 1 cut(s) | 34 |
| BsuRI | GGCC | 7 cut(s) | 23, 84, 119, 237, 464, 608, 660 |
| Cac8I | GCNNGC | 2 cut(s) | 606, 667 |
| CciI | TCATGA | 1 cut(s) | 246 |
| Cfr10I | RCCGGY | 1 cut(s) | 604 |
| Cfr13I | GGNCC | 2 cut(s) | 82, 578 |
| Csp6I | GTAC | 1 cut(s) | 127 |
| CviAII | CATG | 2 cut(s) | 54, 247 |
| CviQI | GTAC | 1 cut(s) | 127 |
| DdeI | CTNAG | 3 cut(s) | 34, 133, 205 |
| DpnI | GATC | 2 cut(s) | 318, 656 |
| DpnII | GATC | 2 cut(s) | 316, 654 |
| EaeI | YGGCCR | 6 cut(s) | 21, 117, 235, 462, 606, 658 |
| EagI | CGGCCG | 1 cut(s) | 658 |
| Eam1104I | CTCTTC | 1 cut(s) | 172 |
| EarI | CTCTTC | 1 cut(s) | 172 |
| EclXI | CGGCCG | 1 cut(s) | 658 |
| Eco130I | CCWWGG | 1 cut(s) | 120 |
| Eco32I | GATATC | 1 cut(s) | 531 |
| Eco47I | GGWCC | 1 cut(s) | 578 |
| Eco52I | CGGCCG | 1 cut(s) | 658 |
| Eco81I | CCTNAGG | 1 cut(s) | 34 |
| EcoRI | GAATTC | 1 cut(s) | 467 |
| EcoRV | GATATC | 1 cut(s) | 531 |
| EcoT14I | CCWWGG | 1 cut(s) | 120 |
| ErhI | CCWWGG | 1 cut(s) | 120 |
| FaeI | CATG | 2 cut(s) | 57, 250 |
| FaiI | YATR | 6 cut(s) | 55, 219, 248, 527, 572, 599 |
| FatI | CATG | 2 cut(s) | 53, 246 |
| Fnu4HI | GCNGC | 4 cut(s) | 347, 444, 489, 602 |
| Fsp4HI | GCNGC | 4 cut(s) | 347, 444, 489, 602 |
| FspBI | CTAG | 4 cut(s) | 254, 623, 666, 670 |
| GluI | GCNGC | 4 cut(s) | 347, 444, 489, 602 |
| GsuI | CTGGAG | 1 cut(s) | 295 |
| HaeIII | GGCC | 7 cut(s) | 23, 84, 119, 237, 464, 608, 660 |
| HapII | CCGG | 1 cut(s) | 605 |
| Hin1II | CATG | 2 cut(s) | 57, 250 |
| HinfI | GANTC | 2 cut(s) | 250, 361 |
| HpaII | CCGG | 1 cut(s) | 605 |
| Hpy166II | GTNNAC | 2 cut(s) | 508, 640 |
| Hpy188I | TCNGA | 1 cut(s) | 334 |
| Hpy188III | TCNNGA | 6 cut(s) | 139, 157, 175, 247, 322, 623 |
| Hpy8I | GTNNAC | 2 cut(s) | 508, 640 |
| Hpy99I | CGWCG | 1 cut(s) | 564 |
| HpyCH4IV | ACGT | 1 cut(s) | 243 |
| HpyCH4V | TGCA | 3 cut(s) | 262, 446, 570 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 431, 440, 452, 461, 657, 666 |
| HpyF3I | CTNAG | 3 cut(s) | 34, 133, 205 |
| HpySE526I | ACGT | 1 cut(s) | 243 |
| Hsp92II | CATG | 2 cut(s) | 57, 250 |
| KroI | GCCGGC | 1 cut(s) | 604 |
| KroNI | GCCGGC | 1 cut(s) | 606 |
| Kzo9I | GATC | 2 cut(s) | 316, 654 |
| LmnI | GCTCC | 1 cut(s) | 275 |
| LpnPI | CCDG | 5 cut(s) | 21, 325, 339, 363, 618 |
| Lsp1109I | GCAGC | 3 cut(s) | 358, 430, 475 |
| MaeI | CTAG | 4 cut(s) | 254, 623, 666, 670 |
| MaeII | ACGT | 1 cut(s) | 243 |
| MalI | GATC | 2 cut(s) | 318, 656 |
| MboI | GATC | 2 cut(s) | 316, 654 |
| MboII | GAAGA | 3 cut(s) | 80, 159, 556 |
| MfeI | CAATTG | 3 cut(s) | 77, 437, 458 |
| MluCI | AATT | 5 cut(s) | 77, 230, 437, 458, 467 |
| MnlI | CCTC | 6 cut(s) | 43, 57, 175, 285, 406, 610 |
| MroNI | GCCGGC | 1 cut(s) | 604 |
| MseI | TTAA | 2 cut(s) | 483, 495 |
| MspI | CCGG | 1 cut(s) | 605 |
| MunI | CAATTG | 3 cut(s) | 77, 437, 458 |
| MvnI | CGCG | 1 cut(s) | 559 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 431, 440, 452, 461, 657, 666 |
| NaeI | GCCGGC | 1 cut(s) | 606 |
| NdeII | GATC | 2 cut(s) | 316, 654 |
| NgoMIV | GCCGGC | 1 cut(s) | 604 |
| NheI | GCTAGC | 1 cut(s) | 665 |
| NlaIII | CATG | 2 cut(s) | 57, 250 |
| NlaIV | GGNNCC | 1 cut(s) | 555 |
| NmeAIII | GCCGAG | 1 cut(s) | 95 |
| PagI | TCATGA | 1 cut(s) | 246 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 122 |
| PdiI | GCCGGC | 1 cut(s) | 606 |
| PfeI | GAWTC | 2 cut(s) | 250, 361 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 233 |
| PkrI | GCNGC | 4 cut(s) | 348, 445, 490, 603 |
| PspN4I | GGNNCC | 1 cut(s) | 555 |
| PspPI | GGNCC | 2 cut(s) | 82, 578 |
| RsaI | GTAC | 1 cut(s) | 128 |
| RsaNI | GTAC | 1 cut(s) | 127 |
| SaqAI | TTAA | 2 cut(s) | 483, 495 |
| SatI | GCNGC | 4 cut(s) | 347, 444, 489, 602 |
| Sau3AI | GATC | 2 cut(s) | 316, 654 |
| Sau96I | GGNCC | 2 cut(s) | 82, 578 |
| SinI | GGWCC | 1 cut(s) | 578 |
| SmlI | CTYRAG | 2 cut(s) | 296, 320 |
| SmoI | CTYRAG | 2 cut(s) | 296, 320 |
| Sse9I | AATT | 5 cut(s) | 77, 230, 437, 458, 467 |
| SsiI | CCGC | 3 cut(s) | 270, 557, 602 |
| SspMI | CTAG | 4 cut(s) | 254, 623, 666, 670 |
| StyI | CCWWGG | 1 cut(s) | 120 |
| TaiI | ACGT | 1 cut(s) | 246 |
| TaqI | TCGA | 4 cut(s) | 138, 156, 174, 303 |
| TaqII | GACCGA | 4 cut(s) | 89, 142, 160, 178 |
| TasI | AATT | 5 cut(s) | 77, 230, 437, 458, 467 |
| TauI | GCSGC | 1 cut(s) | 604 |
| TfiI | GAWTC | 2 cut(s) | 250, 361 |
| Tru1I | TTAA | 2 cut(s) | 483, 495 |
| Tru9I | TTAA | 2 cut(s) | 483, 495 |
| TseI | GCWGC | 3 cut(s) | 346, 443, 488 |
| TspDTI | ATGAA | 2 cut(s) | 263, 464 |
| TspGWI | ACGGA | 1 cut(s) | 351 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 233 |
| VpaK11BI | GGWCC | 1 cut(s) | 578 |
| XapI | RAATTY | 2 cut(s) | 230, 467 |
| XbaI | TCTAGA | 1 cut(s) | 622 |
| XspI | CTAG | 4 cut(s) | 254, 623, 666, 670 |