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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 215, 319, 446 |
| AclWI | GGATC | 1 cut(s) | 43 |
| AcoI | YGGCCR | 3 cut(s) | 216, 255, 316 |
| AfaI | GTAC | 1 cut(s) | 462 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 439 |
| AgsI | TTSAA | 1 cut(s) | 362 |
| AhlI | ACTAGT | 1 cut(s) | 224 |
| AjiI | CACGTC | 1 cut(s) | 198 |
| AluBI | AGCT | 5 cut(s) | 53, 182, 206, 394, 428 |
| AluI | AGCT | 5 cut(s) | 53, 182, 206, 394, 428 |
| Alw21I | GWGCWC | 1 cut(s) | 55 |
| AlwI | GGATC | 1 cut(s) | 43 |
| AoxI | GGCC | 3 cut(s) | 216, 255, 316 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 128, 160 |
| AsuC2I | CCSGG | 1 cut(s) | 503 |
| AsuHPI | GGTGA | 4 cut(s) | 72, 164, 395, 479 |
| BanII | GRGCYC | 2 cut(s) | 55, 254 |
| BbsI | GAAGAC | 2 cut(s) | 141, 456 |
| Bbv12I | GWGCWC | 1 cut(s) | 55 |
| BbvCI | CCTCAGC | 1 cut(s) | 207 |
| BccI | CCATC | 1 cut(s) | 308 |
| BclI | TGATCA | 1 cut(s) | 325 |
| BcnI | CCSGG | 1 cut(s) | 503 |
| BcuI | ACTAGT | 1 cut(s) | 224 |
| BfaI | CTAG | 2 cut(s) | 179, 225 |
| BisI | GCNGC | 2 cut(s) | 216, 319 |
| BlsI | GCNGC | 2 cut(s) | 217, 320 |
| Bme1390I | CCNGG | 1 cut(s) | 503 |
| BmgBI | CACGTC | 1 cut(s) | 198 |
| BmrFI | CCNGG | 1 cut(s) | 503 |
| BmsI | GCATC | 4 cut(s) | 202, 220, 346, 433 |
| BpiI | GAAGAC | 2 cut(s) | 141, 456 |
| BplI | GAGNNNNNCTC | 1 cut(s) | 37 |
| BpmI | CTGGAG | 1 cut(s) | 222 |
| Bpu10I | CCTNAGC | 2 cut(s) | 207, 438 |
| BpuMI | CCSGG | 1 cut(s) | 503 |
| BsaJI | CCNNGG | 2 cut(s) | 6, 354 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 439 |
| Bse3DI | GCAATG | 1 cut(s) | 476 |
| BseDI | CCNNGG | 2 cut(s) | 6, 354 |
| BseGI | GGATG | 4 cut(s) | 217, 337, 379, 448 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 439 |
| BseMI | GCAATG | 1 cut(s) | 476 |
| BseMII | CTCAG | 2 cut(s) | 198, 438 |
| BseX3I | CGGCCG | 2 cut(s) | 216, 255 |
| Bsh1285I | CGRYCG | 2 cut(s) | 219, 258 |
| BshFI | GGCC | 3 cut(s) | 218, 257, 318 |
| BsiEI | CGRYCG | 2 cut(s) | 219, 258 |
| BsiHKAI | GWGCWC | 1 cut(s) | 55 |
| BsiSI | CCGG | 2 cut(s) | 113, 503 |
| BslFI | GGGAC | 1 cut(s) | 485 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 439 |
| BsmFI | GGGAC | 1 cut(s) | 485 |
| BsnI | GGCC | 3 cut(s) | 218, 257, 318 |
| Bsp1286I | GDGCHC | 2 cut(s) | 55, 254 |
| Bsp143I | GATC | 3 cut(s) | 35, 325, 466 |
| Bsp19I | CCATGG | 1 cut(s) | 354 |
| BspACI | CCGC | 3 cut(s) | 215, 319, 446 |
| BspANI | GGCC | 3 cut(s) | 218, 257, 318 |
| BspCNI | CTCAG | 2 cut(s) | 199, 437 |
| BspPI | GGATC | 1 cut(s) | 43 |
| BspQI | GCTCTTC | 1 cut(s) | 43 |
| BsrDI | GCAATG | 1 cut(s) | 476 |
| BssECI | CCNNGG | 2 cut(s) | 6, 354 |
| BssMI | GATC | 3 cut(s) | 35, 325, 466 |
| BssT1I | CCWWGG | 2 cut(s) | 6, 354 |
| Bst4CI | ACNGT | 1 cut(s) | 288 |
| Bst6I | CTCTTC | 3 cut(s) | 6, 43, 337 |
| BstDEI | CTNAG | 3 cut(s) | 207, 424, 438 |
| BstDSI | CCRYGG | 1 cut(s) | 354 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 437 |
| BstF5I | GGATG | 4 cut(s) | 217, 337, 379, 448 |
| BstKTI | GATC | 3 cut(s) | 38, 328, 469 |
| BstMBI | GATC | 3 cut(s) | 35, 325, 466 |
| BstMCI | CGRYCG | 2 cut(s) | 219, 258 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 212, 425, 434, 443 |
| BstSCI | CCNGG | 1 cut(s) | 501 |
| BstV2I | GAAGAC | 2 cut(s) | 141, 456 |
| BstZI | CGGCCG | 2 cut(s) | 216, 255 |
| BsuRI | GGCC | 3 cut(s) | 218, 257, 318 |
| BtgI | CCRYGG | 1 cut(s) | 354 |
| BtrI | CACGTC | 1 cut(s) | 198 |
| BtsCI | GGATG | 4 cut(s) | 217, 337, 379, 448 |
| Csp6I | GTAC | 1 cut(s) | 461 |
| CviAII | CATG | 3 cut(s) | 305, 355, 370 |
| CviQI | GTAC | 1 cut(s) | 461 |
| DdeI | CTNAG | 3 cut(s) | 207, 424, 438 |
| DpnI | GATC | 3 cut(s) | 37, 327, 468 |
| DpnII | GATC | 3 cut(s) | 35, 325, 466 |
| EaeI | YGGCCR | 3 cut(s) | 216, 255, 316 |
| EagI | CGGCCG | 2 cut(s) | 216, 255 |
| Eam1104I | CTCTTC | 3 cut(s) | 6, 43, 337 |
| EarI | CTCTTC | 3 cut(s) | 6, 43, 337 |
| Ecl136II | GAGCTC | 1 cut(s) | 53 |
| EclXI | CGGCCG | 2 cut(s) | 216, 255 |
| Eco130I | CCWWGG | 2 cut(s) | 6, 354 |
| Eco24I | GRGCYC | 2 cut(s) | 55, 254 |
| Eco52I | CGGCCG | 2 cut(s) | 216, 255 |
| Eco53kI | GAGCTC | 1 cut(s) | 53 |
| EcoICRI | GAGCTC | 1 cut(s) | 53 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 437 |
| EcoT14I | CCWWGG | 2 cut(s) | 6, 354 |
| EcoT38I | GRGCYC | 2 cut(s) | 55, 254 |
| ErhI | CCWWGG | 2 cut(s) | 6, 354 |
| FaeI | CATG | 3 cut(s) | 308, 358, 373 |
| FaiI | YATR | 7 cut(s) | 125, 140, 158, 306, 356, 371, 508 |
| FaqI | GGGAC | 1 cut(s) | 485 |
| FatI | CATG | 3 cut(s) | 304, 354, 369 |
| FbaI | TGATCA | 1 cut(s) | 325 |
| Fnu4HI | GCNGC | 2 cut(s) | 216, 319 |
| FokI | GGATG | 4 cut(s) | 224, 324, 386, 455 |
| FriOI | GRGCYC | 2 cut(s) | 55, 254 |
| Fsp4HI | GCNGC | 2 cut(s) | 216, 319 |
| FspBI | CTAG | 2 cut(s) | 179, 225 |
| GluI | GCNGC | 2 cut(s) | 216, 319 |
| GsuI | CTGGAG | 1 cut(s) | 222 |
| HaeIII | GGCC | 3 cut(s) | 218, 257, 318 |
| HapII | CCGG | 2 cut(s) | 113, 503 |
| Hin1II | CATG | 3 cut(s) | 308, 358, 373 |
| HinfI | GANTC | 1 cut(s) | 109 |
| HpaII | CCGG | 2 cut(s) | 113, 503 |
| HphI | GGTGA | 4 cut(s) | 72, 164, 395, 479 |
| Hpy166II | GTNNAC | 1 cut(s) | 461 |
| Hpy188I | TCNGA | 1 cut(s) | 292 |
| Hpy188III | TCNNGA | 5 cut(s) | 45, 106, 201, 344, 470 |
| Hpy8I | GTNNAC | 1 cut(s) | 461 |
| HpyAV | CCTTC | 2 cut(s) | 61, 260 |
| HpyCH4III | ACNGT | 1 cut(s) | 288 |
| HpyCH4IV | ACGT | 1 cut(s) | 197 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 212, 425, 434, 443 |
| HpyF3I | CTNAG | 3 cut(s) | 207, 424, 438 |
| HpySE526I | ACGT | 1 cut(s) | 197 |
| Hsp92II | CATG | 3 cut(s) | 308, 358, 373 |
| Ksp22I | TGATCA | 1 cut(s) | 325 |
| Kzo9I | GATC | 3 cut(s) | 35, 325, 466 |
| LguI | GCTCTTC | 1 cut(s) | 43 |
| LmnI | GCTCC | 1 cut(s) | 203 |
| LpnPI | CCDG | 6 cut(s) | 96, 126, 186, 288, 357, 404 |
| LweI | GCATC | 4 cut(s) | 202, 220, 346, 433 |
| MaeI | CTAG | 2 cut(s) | 179, 225 |
| MaeII | ACGT | 1 cut(s) | 197 |
| MaeIII | GTNAC | 2 cut(s) | 78, 103 |
| MalI | GATC | 3 cut(s) | 37, 327, 468 |
| MboI | GATC | 3 cut(s) | 35, 325, 466 |
| MboII | GAAGA | 5 cut(s) | 23, 60, 146, 324, 461 |
| MhlI | GDGCHC | 2 cut(s) | 55, 254 |
| MluCI | AATT | 2 cut(s) | 141, 363 |
| MnlI | CCTC | 7 cut(s) | 26, 31, 142, 202, 244, 351, 466 |
| MspI | CCGG | 2 cut(s) | 113, 503 |
| MspR9I | CCNGG | 1 cut(s) | 503 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 212, 425, 434, 443 |
| NciI | CCSGG | 1 cut(s) | 503 |
| NcoI | CCATGG | 1 cut(s) | 354 |
| NdeII | GATC | 3 cut(s) | 35, 325, 466 |
| NlaIII | CATG | 3 cut(s) | 308, 358, 373 |
| NmeAIII | GCCGAG | 1 cut(s) | 233 |
| NmuCI | GTSAC | 2 cut(s) | 78, 103 |
| PciSI | GCTCTTC | 1 cut(s) | 43 |
| PfeI | GAWTC | 1 cut(s) | 109 |
| PkrI | GCNGC | 2 cut(s) | 217, 320 |
| Psp124BI | GAGCTC | 1 cut(s) | 55 |
| RsaI | GTAC | 1 cut(s) | 462 |
| RsaNI | GTAC | 1 cut(s) | 461 |
| SacI | GAGCTC | 1 cut(s) | 55 |
| SapI | GCTCTTC | 1 cut(s) | 43 |
| SatI | GCNGC | 2 cut(s) | 216, 319 |
| Sau3AI | GATC | 3 cut(s) | 35, 325, 466 |
| ScrFI | CCNGG | 1 cut(s) | 503 |
| SduI | GDGCHC | 2 cut(s) | 55, 254 |
| SfaNI | GCATC | 4 cut(s) | 202, 220, 346, 433 |
| SpeI | ACTAGT | 1 cut(s) | 224 |
| Sse9I | AATT | 2 cut(s) | 141, 363 |
| SsiI | CCGC | 3 cut(s) | 215, 319, 446 |
| SspMI | CTAG | 2 cut(s) | 179, 225 |
| SstI | GAGCTC | 1 cut(s) | 55 |
| StyD4I | CCNGG | 1 cut(s) | 501 |
| StyI | CCWWGG | 2 cut(s) | 6, 354 |
| TaaI | ACNGT | 1 cut(s) | 288 |
| TaiI | ACGT | 1 cut(s) | 200 |
| TaqI | TCGA | 3 cut(s) | 147, 405, 469 |
| TaqII | GACCGA | 1 cut(s) | 91 |
| TasI | AATT | 2 cut(s) | 141, 363 |
| TatI | WGTACW | 1 cut(s) | 460 |
| TauI | GCSGC | 2 cut(s) | 218, 321 |
| TfiI | GAWTC | 1 cut(s) | 109 |
| TseFI | GTSAC | 2 cut(s) | 78, 103 |
| Tsp45I | GTSAC | 2 cut(s) | 78, 103 |
| TspDTI | ATGAA | 1 cut(s) | 294 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 437 |
| XspI | CTAG | 2 cut(s) | 179, 225 |