Rh3AG311800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000063
Physical Location & Seq
Reverse (-)
39268277 .. 39276779
8503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG311800.1

Sequence Viewer

Length: 1194 bp
ATGCCACCACGTCCTCCAACTCCAACTGTTCCTCTTCCATTCTTCACCGCTTTCTCCGGCCTTTGTCTCCACAACACGTCTTCTGTGTCTCAATCTGGGCATTGCACTCATTCACTGATTCGACCTCATCAAAGACCTGACCAATCAAATTTTCAATTAAGGCGTCTTGGCCAGTTGAGCTTGAAGCCCAAAACGGTCACAAATGACAAGAAGGCTAAAGATGAGGCCGAAGCTAAGGCAAAACAATTACTCAACTATAGCACCTTCTATGCCACACATGCAGTTGATGAAGAGAAAGGCATGTCCAGGGATGAGTTTGCCATATGTTACAGCCGAGATCACCCTTCTTGTCTTGCGATTGACATATCAACATTATGGGAGAAGAAATTAGACTTGGATGTGATTCTATCTTGGGGAAGTATTCTGATTTCTCGGGACTTGAACTATGGCCTCAAAGGTACAGTGGGTCGAAACCACTTCTCGTCATGGAGAGATGGGTTCACACGAACTTCTCAGTGTTCGGCCGTTGGTAAGTACTATGAGGAGCAATTTGGCAAGTTTGAAAGGTCCGGCCTAAAGCCTCGTTGTCCTGATCATAGAGCCACCCCACACTTCCAAACATGGTGGTCAACTTTTATCATGAAAAATCTTGGAAAGGACTTGGCTGGGACCCAACGCGCTGCATTACAAGGACTTCTAAACTTGCTAGGCCCCAATGAAGGTAATGGTAAGAAGAAAATACCGGATGGCAAGTCAAAATCAACCAAAGGATCCTCTAAACAAGGACAAACATCGAAGAAACGTGGCTCAACATTGGGGTATACTCAGAATGCCAAGAAAACAAAGAAATCATCGGATGTGGTGGAGAATTCAATCACAAACCCGACAGACACTATGGTTAGTGAAGACATATTTTTTGAGGCTAATATGGATGATGGCCACGATGCTTTGGCTGAAAACCAAAATACGTCTGAAATTGAGGATATGGCCGAAACTGGTGACGCCTCGATCCATAACGCGGACTCGGCTGATAGCGAAGGTTATTCGGAAGAAGCTCAATCAGAAAGCGGTGATCAAGAGAGAGATGGCCGCATTGATCATTCTTTGCCCCCACTTGAAAACTCCATGATTGAGATTGACATGGACGTAAGCCTTCCCTACTCCTTTCTTGGATTTCATTTCTTGCTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

397

Amino Acids

44.12

Weight (kDa)

6.13

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 821
AccII CGCG 2 cut(s) 678, 1019
AciI CCGC 4 cut(s) 48, 1019, 1068, 1090
AclWI GGATC 3 cut(s) 765, 778, 1003
AcoI YGGCCR 5 cut(s) 169, 522, 937, 987, 1087
AcsI RAATTY 2 cut(s) 148, 868
AcyI GRCGYC 2 cut(s) 163, 1002
AfaI GTAC 2 cut(s) 460, 536
AfiI CCNNNNNNNGG 2 cut(s) 719, 1018
AflIII ACRYGT 1 cut(s) 75
AgsI TTSAA 6 cut(s) 155, 184, 442, 563, 873, 1118
AjiI CACGTC 2 cut(s) 11, 78
AjnI CCWGG 1 cut(s) 305
AjuI GAANNNNNNNTTGG 4 cut(s) 135, 167, 377, 409
AluBI AGCT 3 cut(s) 180, 233, 1055
AluI AGCT 3 cut(s) 180, 233, 1055
Alw26I GTCTC 2 cut(s) 71, 93
AlwI GGATC 3 cut(s) 765, 778, 1003
Ama87I CYCGRG 1 cut(s) 432
ApeKI GCWGC 1 cut(s) 680
ApoI RAATTY 2 cut(s) 148, 868
ArsI GACNNNNNNTTYG 2 cut(s) 899, 931
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 3 cut(s) 567, 669, 710
AsuHPI GGTGA 4 cut(s) 37, 332, 1010, 1082
AvaI CYCGRG 1 cut(s) 432
AvaII GGWCC 2 cut(s) 567, 669
BalI TGGCCA 2 cut(s) 171, 939
BamHI GGATCC 1 cut(s) 770
BbsI GAAGAC 2 cut(s) 72, 912
BbvI GCAGC 1 cut(s) 667
BccI CCATC 4 cut(s) 488, 740, 929, 1079
BceAI ACGGC 1 cut(s) 509
BciT130I CCWGG 1 cut(s) 307
BclI TGATCA 3 cut(s) 592, 1072, 1096
BcoDI GTCTC 2 cut(s) 71, 93
BfaI CTAG 1 cut(s) 707
BfmI CTRYAG 1 cut(s) 256
BisI GCNGC 2 cut(s) 681, 1090
BlsI GCNGC 2 cut(s) 682, 1091
BmcAI AGTACT 1 cut(s) 536
Bme1390I CCNGG 1 cut(s) 307
Bme18I GGWCC 2 cut(s) 567, 669
BmeT110I CYCGRG 1 cut(s) 432
BmgBI CACGTC 2 cut(s) 11, 78
BmgT120I GGNCC 3 cut(s) 567, 669, 710
BmiI GGNNCC 4 cut(s) 670, 671, 712, 772
BmrFI CCNGG 1 cut(s) 307
BmsI GCATC 1 cut(s) 934
BpiI GAAGAC 2 cut(s) 72, 912
Bpu10I CCTNAGC 1 cut(s) 234
BsaHI GRCGYC 2 cut(s) 163, 1002
BsaJI CCNNGG 1 cut(s) 306
BsaWI WCCGGW 1 cut(s) 742
Bsc4I CCNNNNNNNGG 2 cut(s) 719, 1018
Bse1I ACTGG 2 cut(s) 172, 1000
Bse3DI GCAATG 1 cut(s) 100
BseBI CCWGG 1 cut(s) 307
BseDI CCNNGG 1 cut(s) 306
BseGI GGATG 5 cut(s) 316, 403, 751, 862, 937
BseLI CCNNNNNNNGG 2 cut(s) 719, 1018
BseMI GCAATG 1 cut(s) 100
BseMII CTCAG 2 cut(s) 527, 839
BseNI ACTGG 2 cut(s) 172, 1000
BseRI GAGGAG 1 cut(s) 557
BseX3I CGGCCG 1 cut(s) 522
BseXI GCAGC 1 cut(s) 667
BseYI CCCAGC 1 cut(s) 665
Bsh1236I CGCG 2 cut(s) 678, 1019
Bsh1285I CGRYCG 1 cut(s) 525
BsiEI CGRYCG 1 cut(s) 525
BsiHKCI CYCGRG 1 cut(s) 432
BsiSI CCGG 3 cut(s) 57, 570, 743
BslFI GGGAC 2 cut(s) 449, 682
BslI CCNNNNNNNGG 2 cut(s) 719, 1018
BsmAI GTCTC 2 cut(s) 71, 93
BsmFI GGGAC 2 cut(s) 449, 682
BsmI GAATGC 1 cut(s) 835
BsoBI CYCGRG 1 cut(s) 432
Bsp143I GATC 6 cut(s) 337, 592, 770, 1008, 1072, 1096
BspACI CCGC 4 cut(s) 48, 1019, 1068, 1090
BspCNI CTCAG 2 cut(s) 526, 838
BspFNI CGCG 2 cut(s) 678, 1019
BspHI TCATGA 1 cut(s) 639
BspLI GGNNCC 4 cut(s) 670, 671, 712, 772
BspPI GGATC 3 cut(s) 765, 778, 1003
BsrDI GCAATG 1 cut(s) 100
BsrI ACTGG 2 cut(s) 172, 1000
BssECI CCNNGG 1 cut(s) 306
BssMI GATC 6 cut(s) 337, 592, 770, 1008, 1072, 1096
BssNAI GTATAC 1 cut(s) 822
BssNI GRCGYC 2 cut(s) 163, 1002
Bst1107I GTATAC 1 cut(s) 822
Bst2UI CCWGG 1 cut(s) 307
Bst4CI ACNGT 3 cut(s) 28, 196, 463
Bst6I CTCTTC 2 cut(s) 39, 285
BstACI GRCGYC 2 cut(s) 163, 1002
BstDEI CTNAG 3 cut(s) 234, 513, 825
BstF5I GGATG 5 cut(s) 316, 403, 751, 862, 937
BstFNI CGCG 2 cut(s) 678, 1019
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 6 cut(s) 340, 595, 773, 1011, 1075, 1099
BstMAI GTCTC 2 cut(s) 71, 93
BstMBI GATC 6 cut(s) 337, 592, 770, 1008, 1072, 1096
BstMCI CGRYCG 1 cut(s) 525
BstMWI GCNNNNNNNGC 3 cut(s) 177, 278, 1025
BstNI CCWGG 1 cut(s) 307
BstNSI RCATGY 2 cut(s) 281, 304
BstSCI CCNGG 1 cut(s) 305
BstSFI CTRYAG 1 cut(s) 256
BstUI CGCG 2 cut(s) 678, 1019
BstV1I GCAGC 1 cut(s) 667
BstV2I GAAGAC 2 cut(s) 72, 912
BstX2I RGATCY 1 cut(s) 770
BstYI RGATCY 1 cut(s) 770
BstZ17I GTATAC 1 cut(s) 822
BstZI CGGCCG 1 cut(s) 522
BtrI CACGTC 2 cut(s) 11, 78
BtsCI GGATG 5 cut(s) 316, 403, 751, 862, 937
BtsIMutI CAGTG 3 cut(s) 113, 468, 521
CciI TCATGA 1 cut(s) 639
CfoI GCGC 1 cut(s) 680
Cfr13I GGNCC 3 cut(s) 567, 669, 710
CseI GACGC 2 cut(s) 152, 1010
Csp6I GTAC 2 cut(s) 459, 535
CspCI CAANNNNNGTGG 2 cut(s) 605, 640
CviAII CATG 7 cut(s) 278, 301, 486, 621, 640, 1126, 1141
CviQI GTAC 2 cut(s) 459, 535
DdeI CTNAG 3 cut(s) 234, 513, 825
DpnI GATC 6 cut(s) 339, 594, 772, 1010, 1074, 1098
DpnII GATC 6 cut(s) 337, 592, 770, 1008, 1072, 1096
EaeI YGGCCR 5 cut(s) 169, 522, 937, 987, 1087
EagI CGGCCG 1 cut(s) 522
Eam1104I CTCTTC 2 cut(s) 39, 285
EarI CTCTTC 2 cut(s) 39, 285
EclXI CGGCCG 1 cut(s) 522
Eco47I GGWCC 2 cut(s) 567, 669
Eco52I CGGCCG 1 cut(s) 522
Eco88I CYCGRG 1 cut(s) 432
EcoO109I RGGNCCY 2 cut(s) 669, 710
EcoRI GAATTC 1 cut(s) 868
EcoRII CCWGG 1 cut(s) 305
FaeI CATG 7 cut(s) 281, 304, 489, 624, 643, 1129, 1144
FaqI GGGAC 2 cut(s) 449, 682
FatI CATG 7 cut(s) 277, 300, 485, 620, 639, 1125, 1140
FauNDI CATATG 1 cut(s) 323
FbaI TGATCA 3 cut(s) 592, 1072, 1096
FblI GTMKAC 1 cut(s) 821
Fnu4HI GCNGC 2 cut(s) 681, 1090
FokI GGATG 5 cut(s) 323, 410, 758, 869, 944
Fsp4HI GCNGC 2 cut(s) 681, 1090
FspBI CTAG 1 cut(s) 707
GlaI GCGC 1 cut(s) 679
GluI GCNGC 2 cut(s) 681, 1090
GsaI CCCAGC 1 cut(s) 669
HapII CCGG 3 cut(s) 57, 570, 743
HgaI GACGC 2 cut(s) 152, 1010
HhaI GCGC 1 cut(s) 680
Hin1I GRCGYC 2 cut(s) 163, 1002
Hin1II CATG 7 cut(s) 281, 304, 489, 624, 643, 1129, 1144
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HinfI GANTC 3 cut(s) 118, 403, 1022
HpaII CCGG 3 cut(s) 57, 570, 743
HphI GGTGA 4 cut(s) 37, 332, 1010, 1082
Hpy166II GTNNAC 3 cut(s) 501, 630, 822
Hpy188I TCNGA 7 cut(s) 426, 828, 856, 973, 1048, 1063, 1193
Hpy188III TCNNGA 4 cut(s) 434, 590, 640, 1076
Hpy8I GTNNAC 3 cut(s) 501, 630, 822
HpyAV CCTTC 6 cut(s) 205, 274, 354, 713, 1031, 1163
HpyCH4III ACNGT 3 cut(s) 28, 196, 463
HpyCH4IV ACGT 5 cut(s) 10, 77, 802, 968, 1146
HpyCH4V TGCA 3 cut(s) 105, 281, 683
HpyF10VI GCNNNNNNNGC 3 cut(s) 177, 278, 1025
HpyF3I CTNAG 3 cut(s) 234, 513, 825
HpySE526I ACGT 5 cut(s) 10, 77, 802, 968, 1146
Hsp92I GRCGYC 2 cut(s) 163, 1002
Hsp92II CATG 7 cut(s) 281, 304, 489, 624, 643, 1129, 1144
HspAI GCGC 1 cut(s) 678
KflI GGGWCCC 1 cut(s) 669
Ksp22I TGATCA 3 cut(s) 592, 1072, 1096
Kzo9I GATC 6 cut(s) 337, 592, 770, 1008, 1072, 1096
LmnI GCTCC 1 cut(s) 544
Lsp1109I GCAGC 1 cut(s) 667
LweI GCATC 1 cut(s) 934
MaeI CTAG 1 cut(s) 707
MaeII ACGT 5 cut(s) 10, 77, 802, 968, 1146
MaeIII GTNAC 3 cut(s) 196, 326, 998
MalI GATC 6 cut(s) 339, 594, 772, 1010, 1074, 1098
MboI GATC 6 cut(s) 337, 592, 770, 1008, 1072, 1096
MboII GAAGA 9 cut(s) 26, 34, 72, 302, 394, 745, 808, 917, 1061
MflI RGATCY 1 cut(s) 770
MlsI TGGCCA 2 cut(s) 171, 939
MluCI AATT 7 cut(s) 148, 155, 245, 386, 548, 868, 975
MluNI TGGCCA 2 cut(s) 171, 939
MlyI GAGTC 1 cut(s) 1016
MmeI TCCRAC 2 cut(s) 41, 47
Mox20I TGGCCA 2 cut(s) 171, 939
MscI TGGCCA 2 cut(s) 171, 939
MseI TTAA 1 cut(s) 158
Msp20I TGGCCA 2 cut(s) 171, 939
MspI CCGG 3 cut(s) 57, 570, 743
MspR9I CCNGG 1 cut(s) 307
Mva1269I GAATGC 1 cut(s) 835
MvaI CCWGG 1 cut(s) 307
MvnI CGCG 2 cut(s) 678, 1019
MwoI GCNNNNNNNGC 3 cut(s) 177, 278, 1025
NdeI CATATG 1 cut(s) 323
NdeII GATC 6 cut(s) 337, 592, 770, 1008, 1072, 1096
NlaIII CATG 7 cut(s) 281, 304, 489, 624, 643, 1129, 1144
NlaIV GGNNCC 4 cut(s) 670, 671, 712, 772
NmeAIII GCCGAG 2 cut(s) 359, 1004
NmuCI GTSAC 2 cut(s) 196, 998
NspI RCATGY 2 cut(s) 281, 304
PagI TCATGA 1 cut(s) 639
PctI GAATGC 1 cut(s) 835
PfeI GAWTC 2 cut(s) 118, 403
PkrI GCNGC 2 cut(s) 682, 1091
PleI GAGTC 1 cut(s) 1016
PpsI GAGTC 1 cut(s) 1016
PpuMI RGGWCCY 1 cut(s) 669
Psp5II RGGWCCY 1 cut(s) 669
Psp6I CCWGG 1 cut(s) 305
PspFI CCCAGC 1 cut(s) 665
PspGI CCWGG 1 cut(s) 305
PspN4I GGNNCC 4 cut(s) 670, 671, 712, 772
PspPI GGNCC 3 cut(s) 567, 669, 710
PspPPI RGGWCCY 1 cut(s) 669
PsuI RGATCY 1 cut(s) 770
RsaI GTAC 2 cut(s) 460, 536
RsaNI GTAC 2 cut(s) 459, 535
SaqAI TTAA 1 cut(s) 158
SatI GCNGC 2 cut(s) 681, 1090
Sau3AI GATC 6 cut(s) 337, 592, 770, 1008, 1072, 1096
Sau96I GGNCC 3 cut(s) 567, 669, 710
ScaI AGTACT 1 cut(s) 536
SchI GAGTC 1 cut(s) 1016
ScrFI CCNGG 1 cut(s) 307
SfaNI GCATC 1 cut(s) 934
SfcI CTRYAG 1 cut(s) 256
SinI GGWCC 2 cut(s) 567, 669
Sse9I AATT 7 cut(s) 148, 155, 245, 386, 548, 868, 975
SsiI CCGC 4 cut(s) 48, 1019, 1068, 1090
SspMI CTAG 1 cut(s) 707
StyD4I CCNGG 1 cut(s) 305
TaaI ACNGT 3 cut(s) 28, 196, 463
TaiI ACGT 5 cut(s) 13, 80, 805, 971, 1149
TaqI TCGA 4 cut(s) 121, 469, 794, 1007
TasI AATT 7 cut(s) 148, 155, 245, 386, 548, 868, 975
TatI WGTACW 1 cut(s) 534
TauI GCSGC 1 cut(s) 1092
TfiI GAWTC 2 cut(s) 118, 403
Tru1I TTAA 1 cut(s) 158
Tru9I TTAA 1 cut(s) 158
TscAI CASTG 3 cut(s) 120, 468, 521
TseFI GTSAC 2 cut(s) 196, 998
TseI GCWGC 1 cut(s) 680
Tsp45I GTSAC 2 cut(s) 196, 998
TspDTI ATGAA 4 cut(s) 303, 656, 732, 1166
TspRI CASTG 3 cut(s) 120, 468, 521
VpaK11BI GGWCC 2 cut(s) 567, 669
XapI RAATTY 2 cut(s) 148, 868
XceI RCATGY 2 cut(s) 281, 304
XmiI GTMKAC 1 cut(s) 821
XspI CTAG 1 cut(s) 707
ZrmI AGTACT 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.