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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 536 |
| AcoI | YGGCCR | 3 cut(s) | 18, 195, 228 |
| AcsI | RAATTY | 1 cut(s) | 613 |
| AcuI | CTGAAG | 3 cut(s) | 155, 308, 635 |
| AcyI | GRCGYC | 1 cut(s) | 506 |
| AfaI | GTAC | 1 cut(s) | 667 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 431, 432, 624 |
| AgsI | TTSAA | 6 cut(s) | 78, 161, 473, 514, 551, 610 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 401, 433 |
| AluBI | AGCT | 7 cut(s) | 121, 299, 316, 350, 544, 677, 686 |
| AluI | AGCT | 7 cut(s) | 121, 299, 316, 350, 544, 677, 686 |
| Alw21I | GWGCWC | 2 cut(s) | 66, 679 |
| Alw26I | GTCTC | 4 cut(s) | 9, 47, 471, 517 |
| Ama87I | CYCGRG | 1 cut(s) | 425 |
| AoxI | GGCC | 4 cut(s) | 18, 195, 228, 600 |
| ApoI | RAATTY | 1 cut(s) | 613 |
| AspA2I | CCTAGG | 1 cut(s) | 623 |
| AsuHPI | GGTGA | 2 cut(s) | 58, 320 |
| AvaI | CYCGRG | 1 cut(s) | 425 |
| AvrII | CCTAGG | 1 cut(s) | 623 |
| BanII | GRGCYC | 2 cut(s) | 286, 679 |
| BbsI | GAAGAC | 1 cut(s) | 385 |
| Bbv12I | GWGCWC | 2 cut(s) | 66, 679 |
| BccI | CCATC | 1 cut(s) | 272 |
| BcoDI | GTCTC | 4 cut(s) | 9, 47, 471, 517 |
| BfaI | CTAG | 4 cut(s) | 140, 215, 317, 624 |
| BlnI | CCTAGG | 1 cut(s) | 623 |
| BmeT110I | CYCGRG | 1 cut(s) | 425 |
| BmiI | GGNNCC | 1 cut(s) | 423 |
| BmsI | GCATC | 1 cut(s) | 190 |
| BpiI | GAAGAC | 1 cut(s) | 385 |
| BpuEI | CTTGAG | 1 cut(s) | 659 |
| BsaHI | GRCGYC | 1 cut(s) | 506 |
| BsaJI | CCNNGG | 4 cut(s) | 417, 577, 623, 669 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 431, 432, 624 |
| Bse1I | ACTGG | 2 cut(s) | 87, 664 |
| Bse3DI | GCAATG | 1 cut(s) | 45 |
| BseDI | CCNNGG | 4 cut(s) | 417, 577, 623, 669 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 431, 432, 624 |
| BseMI | GCAATG | 1 cut(s) | 45 |
| BseNI | ACTGG | 2 cut(s) | 87, 664 |
| BseRI | GAGGAG | 1 cut(s) | 65 |
| BseX3I | CGGCCG | 1 cut(s) | 195 |
| Bsh1285I | CGRYCG | 1 cut(s) | 198 |
| BshFI | GGCC | 4 cut(s) | 20, 197, 230, 602 |
| BsiEI | CGRYCG | 1 cut(s) | 198 |
| BsiHKAI | GWGCWC | 2 cut(s) | 66, 679 |
| BsiHKCI | CYCGRG | 1 cut(s) | 425 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 431, 432, 624 |
| BsmAI | GTCTC | 4 cut(s) | 9, 47, 471, 517 |
| BsnI | GGCC | 4 cut(s) | 20, 197, 230, 602 |
| BsoBI | CYCGRG | 1 cut(s) | 425 |
| Bsp1286I | GDGCHC | 3 cut(s) | 66, 286, 679 |
| BspACI | CCGC | 1 cut(s) | 536 |
| BspANI | GGCC | 4 cut(s) | 20, 197, 230, 602 |
| BspHI | TCATGA | 1 cut(s) | 180 |
| BspLI | GGNNCC | 1 cut(s) | 423 |
| BsrDI | GCAATG | 1 cut(s) | 45 |
| BsrI | ACTGG | 2 cut(s) | 87, 664 |
| BssECI | CCNNGG | 4 cut(s) | 417, 577, 623, 669 |
| BssNI | GRCGYC | 1 cut(s) | 506 |
| BssT1I | CCWWGG | 4 cut(s) | 417, 577, 623, 669 |
| Bst4CI | ACNGT | 1 cut(s) | 240 |
| BstACI | GRCGYC | 1 cut(s) | 506 |
| BstC8I | GCNNGC | 1 cut(s) | 84 |
| BstMAI | GTCTC | 4 cut(s) | 9, 47, 471, 517 |
| BstMCI | CGRYCG | 1 cut(s) | 198 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 194, 683, 692 |
| BstV2I | GAAGAC | 1 cut(s) | 385 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 350 |
| BstZI | CGGCCG | 1 cut(s) | 195 |
| BsuRI | GGCC | 4 cut(s) | 20, 197, 230, 602 |
| BtsI | GCAGTG | 1 cut(s) | 569 |
| BtsIMutI | CAGTG | 2 cut(s) | 569, 657 |
| Cac8I | GCNNGC | 1 cut(s) | 84 |
| CciI | TCATGA | 1 cut(s) | 180 |
| CseI | GACGC | 1 cut(s) | 495 |
| Csp6I | GTAC | 1 cut(s) | 666 |
| CviAII | CATG | 2 cut(s) | 181, 344 |
| CviQI | GTAC | 1 cut(s) | 666 |
| EaeI | YGGCCR | 3 cut(s) | 18, 195, 228 |
| EagI | CGGCCG | 1 cut(s) | 195 |
| EciI | GGCGGA | 1 cut(s) | 551 |
| Ecl136II | GAGCTC | 1 cut(s) | 677 |
| EclXI | CGGCCG | 1 cut(s) | 195 |
| Eco130I | CCWWGG | 4 cut(s) | 417, 577, 623, 669 |
| Eco24I | GRGCYC | 2 cut(s) | 286, 679 |
| Eco52I | CGGCCG | 1 cut(s) | 195 |
| Eco53kI | GAGCTC | 1 cut(s) | 677 |
| Eco57I | CTGAAG | 3 cut(s) | 155, 308, 635 |
| Eco88I | CYCGRG | 1 cut(s) | 425 |
| EcoICRI | GAGCTC | 1 cut(s) | 677 |
| EcoT14I | CCWWGG | 4 cut(s) | 417, 577, 623, 669 |
| EcoT38I | GRGCYC | 2 cut(s) | 286, 679 |
| ErhI | CCWWGG | 4 cut(s) | 417, 577, 623, 669 |
| FaeI | CATG | 2 cut(s) | 184, 347 |
| FaiI | YATR | 6 cut(s) | 47, 182, 345, 358, 443, 632 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 153, 185, 401, 433 |
| FatI | CATG | 2 cut(s) | 180, 343 |
| FriOI | GRGCYC | 2 cut(s) | 286, 679 |
| FspBI | CTAG | 4 cut(s) | 140, 215, 317, 624 |
| HaeIII | GGCC | 4 cut(s) | 20, 197, 230, 602 |
| HgaI | GACGC | 1 cut(s) | 495 |
| Hin1I | GRCGYC | 1 cut(s) | 506 |
| Hin1II | CATG | 2 cut(s) | 184, 347 |
| HincII | GTYRAC | 1 cut(s) | 327 |
| HindII | GTYRAC | 1 cut(s) | 327 |
| HindIII | AAGCTT | 1 cut(s) | 684 |
| HinfI | GANTC | 1 cut(s) | 464 |
| HpaI | GTTAAC | 1 cut(s) | 327 |
| HphI | GGTGA | 2 cut(s) | 58, 320 |
| Hpy166II | GTNNAC | 1 cut(s) | 327 |
| Hpy188I | TCNGA | 1 cut(s) | 288 |
| Hpy188III | TCNNGA | 5 cut(s) | 8, 181, 425, 470, 653 |
| Hpy8I | GTNNAC | 1 cut(s) | 327 |
| Hpy99I | CGWCG | 1 cut(s) | 106 |
| HpyAV | CCTTC | 6 cut(s) | 105, 137, 283, 467, 557, 659 |
| HpyCH4III | ACNGT | 1 cut(s) | 240 |
| HpyCH4V | TGCA | 1 cut(s) | 634 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 194, 683, 692 |
| Hsp92I | GRCGYC | 1 cut(s) | 506 |
| Hsp92II | CATG | 2 cut(s) | 184, 347 |
| KspAI | GTTAAC | 1 cut(s) | 327 |
| LmnI | GCTCC | 2 cut(s) | 549, 674 |
| LpnPI | CCDG | 7 cut(s) | 21, 100, 107, 158, 336, 638, 645 |
| LweI | GCATC | 1 cut(s) | 190 |
| MaeI | CTAG | 4 cut(s) | 140, 215, 317, 624 |
| MaeIII | GTNAC | 2 cut(s) | 240, 644 |
| MboII | GAAGA | 2 cut(s) | 390, 421 |
| MfeI | CAATTG | 2 cut(s) | 254, 500 |
| MhlI | GDGCHC | 3 cut(s) | 66, 286, 679 |
| MluCI | AATT | 4 cut(s) | 254, 500, 605, 613 |
| MlyI | GAGTC | 1 cut(s) | 473 |
| MmeI | TCCRAC | 2 cut(s) | 235, 471 |
| MnlI | CCTC | 5 cut(s) | 43, 109, 177, 262, 592 |
| MseI | TTAA | 2 cut(s) | 326, 681 |
| MspA1I | CMGCKG | 1 cut(s) | 121 |
| MunI | CAATTG | 2 cut(s) | 254, 500 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 194, 683, 692 |
| NlaIII | CATG | 2 cut(s) | 184, 347 |
| NlaIV | GGNNCC | 1 cut(s) | 423 |
| NmeAIII | GCCGAG | 1 cut(s) | 206 |
| PagI | TCATGA | 1 cut(s) | 180 |
| PleI | GAGTC | 1 cut(s) | 472 |
| PpsI | GAGTC | 1 cut(s) | 472 |
| Psp124BI | GAGCTC | 1 cut(s) | 679 |
| PspN4I | GGNNCC | 1 cut(s) | 423 |
| PvuII | CAGCTG | 1 cut(s) | 121 |
| RsaI | GTAC | 1 cut(s) | 667 |
| RsaNI | GTAC | 1 cut(s) | 666 |
| SacI | GAGCTC | 1 cut(s) | 679 |
| SaqAI | TTAA | 2 cut(s) | 326, 681 |
| SchI | GAGTC | 1 cut(s) | 473 |
| SduI | GDGCHC | 3 cut(s) | 66, 286, 679 |
| SfaNI | GCATC | 1 cut(s) | 190 |
| SmlI | CTYRAG | 1 cut(s) | 638 |
| SmoI | CTYRAG | 1 cut(s) | 638 |
| Sse9I | AATT | 4 cut(s) | 254, 500, 605, 613 |
| SsiI | CCGC | 1 cut(s) | 536 |
| SspMI | CTAG | 4 cut(s) | 140, 215, 317, 624 |
| SstI | GAGCTC | 1 cut(s) | 679 |
| StyI | CCWWGG | 4 cut(s) | 417, 577, 623, 669 |
| TaaI | ACNGT | 1 cut(s) | 240 |
| TasI | AATT | 4 cut(s) | 254, 500, 605, 613 |
| Tru1I | TTAA | 2 cut(s) | 326, 681 |
| Tru9I | TTAA | 2 cut(s) | 326, 681 |
| TscAI | CASTG | 2 cut(s) | 569, 664 |
| TspDTI | ATGAA | 4 cut(s) | 56, 169, 345, 422 |
| TspRI | CASTG | 2 cut(s) | 569, 664 |
| XapI | RAATTY | 1 cut(s) | 613 |
| XmaJI | CCTAGG | 1 cut(s) | 623 |
| XspI | CTAG | 4 cut(s) | 140, 215, 317, 624 |