Rh5AG047300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000063
Physical Location & Seq
Forward (+)
3959162 .. 3963960
4799 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG047300.1

Sequence Viewer

Length: 1320 bp
ATGTGTTGCATCTCTTTAGGACAAACATCGAAGAAACGTGGCTCAACATTGGGGTATACTCGAAACGCCAAGAAAACAAAGAAATCATTCGATGTGGTGGAGAATTCAGTCACAAACCCGACGGATACTGTGGTTAGTGAGGACATATTTTTTGAGGCTAATATGGATGATGGCCATGATGCTTTGGCTGACAACCAAAATACGTCTGAAATTGAGGATATGGCTGAAACTGGTGACGCCTCGATCAATAGCGCGGACTCGGCTGATAGCGAAGGTTATTCGGAAGAAGCTCAATCAGAAAGTGGCGATCAAGAGAGAGATGGCCGTATTGATCATTCTTTGCCCCCACTTGAAAACTCCATGATTGAGATTGACATGGACGACTTGGGTGAGAGCCAACTGCACAACACATCGAGCATCGGCCAACAGCTTGCCATATCAAACAACTTTTCCAAGGATGTTGAAAACACAGATGCACGTGGCCGAGAAACACTACTTATCCACCAGACATTGGTTCAGGTGGGAGAATCTCGAAGCAGTACAACCCTAGAATTGGCTCTTCTCAACCAAACTGAACCACATCCTCCTATGTTCGGAACACTTACCTCTCCTCCTAATGATGGGATGTATCCAAGTGAGCAAGCTATTGTTTGCGCTCCATCTTCGGCCGAGCTTGTGGATCATACAGCGGGTGATCTTGGTTTGGACCTACTTCAATTCCTAAATACTCTAGACAACACCACGAGTCCCGAAGAGGAAAAACTTGAAACAGCCGAAACCAAAAAGGCACTTGAGACAGTCAGACAGTTTTTGGGTTGTGATGTGAGAACAGTGACCGAGGCTAGTTTTCTCTCTTTGAAGGAAGCGGTTGAAGTACTTATTTCAGCCAAACATTTCTCTCAGGTAGAGGCTTATGAAGTTCATGCTCGTTTGGCTGTTGTAAATTTTAGTCTCTCTCCTTGTCTAGAAGCACAAAAAGAGTTTGAAGCAGGCGAGAAGCTGAAAAGTGAGTACGATGACATTCGCCAGTCCACCGATCTTGGCCAACTCCAGAAGTTGAAGACTTCTTTGGACGAAGGAAGGCAAAAAGTGCTCGATCTGAGGAAGCAGTTGGCCGAAGCTGAAAAGCAAGTCAAAGTCACTTCGGCCGCCATCCGAAACATCGTTCCCCAACAAGATCTCACCAAGTATAGCTTGATTCTGTCATCGGTCAAGTCGTATAACAAGAAGAGGGGCATCTTGAAGCGAAAGGTCGACCAAGGTATGCAAGACTTAGAAGATGCTAAAGAAGCTCTTCGGTCACTCTTGCCCACTGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

48.3

Weight (kDa)

4.63

Isoelectric Point (pI)

42.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 511
AccI GTMKAC 2 cut(s) 56, 1254
AccII CGCG 1 cut(s) 254
AciI CCGC 4 cut(s) 254, 689, 866, 1149
AclWI GGATC 1 cut(s) 687
AcoI YGGCCR 8 cut(s) 172, 322, 421, 481, 666, 1042, 1113, 1146
AcsI RAATTY 2 cut(s) 103, 943
AcvI CACGTG 1 cut(s) 479
AcyI GRCGYC 1 cut(s) 237
AfaI GTAC 3 cut(s) 541, 876, 1013
AfiI CCNNNNNNNGG 4 cut(s) 511, 553, 593, 620
AgsI TTSAA 9 cut(s) 353, 464, 716, 767, 859, 872, 986, 1060, 1243
AjuI GAANNNNNNNTTGG 2 cut(s) 1052, 1084
AluBI AGCT 8 cut(s) 290, 430, 644, 673, 1000, 1121, 1194, 1292
AluI AGCT 8 cut(s) 290, 430, 644, 673, 1000, 1121, 1194, 1292
Alw21I GWGCWC 1 cut(s) 1095
Alw26I GTCTC 2 cut(s) 788, 956
AlwI GGATC 1 cut(s) 687
AoxI GGCC 8 cut(s) 172, 322, 421, 481, 666, 1042, 1113, 1146
ApoI RAATTY 2 cut(s) 103, 943
ArsI GACNNNNNNTTYG 2 cut(s) 134, 166
Asp700I GAANNNNTTC 2 cut(s) 86, 1293
AspLEI GCGC 2 cut(s) 254, 656
AspS9I GGNCC 1 cut(s) 706
AsuHPI GGTGA 4 cut(s) 245, 401, 704, 1174
AvaII GGWCC 1 cut(s) 706
BaeI ACNNNNGTAYC 2 cut(s) 117, 150
BalI TGGCCA 2 cut(s) 174, 1044
BauI CACGAG 1 cut(s) 742
BbrPI CACGTG 1 cut(s) 479
BbsI GAAGAC 1 cut(s) 1067
Bbv12I GWGCWC 1 cut(s) 1095
BccI CCATC 5 cut(s) 164, 314, 614, 667, 1160
BceAI ACGGC 1 cut(s) 309
BciVI GTATCC 2 cut(s) 118, 639
BclI TGATCA 1 cut(s) 331
BcoDI GTCTC 2 cut(s) 788, 956
BfaI CTAG 4 cut(s) 548, 731, 843, 965
BfuI GTATCC 2 cut(s) 118, 639
BglII AGATCT 1 cut(s) 1177
BisI GCNGC 1 cut(s) 1149
BlsI GCNGC 1 cut(s) 1150
BmcAI AGTACT 1 cut(s) 876
Bme18I GGWCC 1 cut(s) 706
BmgT120I GGNCC 1 cut(s) 706
BmsI GCATC 6 cut(s) 18, 169, 426, 463, 1245, 1270
BpiI GAAGAC 1 cut(s) 1067
BpmI CTGGAG 1 cut(s) 1034
BpuEI CTTGAG 1 cut(s) 812
BsaAI YACGTR 1 cut(s) 479
BsaHI GRCGYC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 453, 837, 1258
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bsc4I CCNNNNNNNGG 4 cut(s) 511, 553, 593, 620
Bse1I ACTGG 2 cut(s) 235, 1027
BseDI CCNNGG 3 cut(s) 453, 837, 1258
BseGI GGATG 5 cut(s) 172, 463, 580, 630, 1152
BseLI CCNNNNNNNGG 4 cut(s) 511, 553, 593, 620
BseMII CTCAG 2 cut(s) 914, 1091
BseNI ACTGG 2 cut(s) 235, 1027
BseRI GAGGAG 1 cut(s) 600
BseX3I CGGCCG 2 cut(s) 666, 1146
BsgI GTGCAG 1 cut(s) 386
Bsh1236I CGCG 1 cut(s) 254
Bsh1285I CGRYCG 2 cut(s) 669, 1149
BshFI GGCC 8 cut(s) 174, 324, 423, 483, 668, 1044, 1115, 1148
BsiEI CGRYCG 2 cut(s) 669, 1149
BsiHKAI GWGCWC 1 cut(s) 1095
BslFI GGGAC 1 cut(s) 732
BslI CCNNNNNNNGG 4 cut(s) 511, 553, 593, 620
BsmAI GTCTC 2 cut(s) 788, 956
BsmFI GGGAC 1 cut(s) 732
BsnI GGCC 8 cut(s) 174, 324, 423, 483, 668, 1044, 1115, 1148
Bsp1286I GDGCHC 1 cut(s) 1095
Bsp143I GATC 8 cut(s) 243, 307, 331, 679, 694, 1036, 1096, 1177
BspACI CCGC 4 cut(s) 254, 689, 866, 1149
BspANI GGCC 8 cut(s) 174, 324, 423, 483, 668, 1044, 1115, 1148
BspCNI CTCAG 2 cut(s) 913, 1092
BspFNI CGCG 1 cut(s) 254
BspPI GGATC 1 cut(s) 687
BspQI GCTCTTC 2 cut(s) 564, 1299
BsrI ACTGG 2 cut(s) 235, 1027
BssECI CCNNGG 3 cut(s) 453, 837, 1258
BssMI GATC 8 cut(s) 243, 307, 331, 679, 694, 1036, 1096, 1177
BssNAI GTATAC 1 cut(s) 57
BssNI GRCGYC 1 cut(s) 237
BssSI CACGAG 1 cut(s) 742
BssT1I CCWWGG 2 cut(s) 453, 1258
Bst1107I GTATAC 1 cut(s) 57
Bst2BI CACGAG 1 cut(s) 742
Bst4CI ACNGT 4 cut(s) 130, 799, 807, 832
Bst6I CTCTTC 4 cut(s) 564, 747, 1223, 1299
BstACI GRCGYC 1 cut(s) 237
BstAPI GCANNNNNTGC 1 cut(s) 1090
BstBAI YACGTR 1 cut(s) 479
BstC8I GCNNGC 3 cut(s) 432, 642, 991
BstDEI CTNAG 3 cut(s) 900, 1100, 1273
BstF5I GGATG 5 cut(s) 172, 463, 580, 630, 1152
BstFNI CGCG 1 cut(s) 254
BstHHI GCGC 2 cut(s) 254, 656
BstKTI GATC 8 cut(s) 246, 310, 334, 682, 697, 1039, 1099, 1180
BstMAI GTCTC 2 cut(s) 788, 956
BstMBI GATC 8 cut(s) 243, 307, 331, 679, 694, 1036, 1096, 1177
BstMCI CGRYCG 2 cut(s) 669, 1149
BstMWI GCNNNNNNNGC 4 cut(s) 260, 932, 1090, 1289
BstUI CGCG 1 cut(s) 254
BstV2I GAAGAC 1 cut(s) 1067
BstX2I RGATCY 1 cut(s) 1177
BstYI RGATCY 1 cut(s) 1177
BstZ17I GTATAC 1 cut(s) 57
BstZI CGGCCG 2 cut(s) 666, 1146
BsuI GTATCC 2 cut(s) 118, 639
BsuRI GGCC 8 cut(s) 174, 324, 423, 483, 668, 1044, 1115, 1148
BtsCI GGATG 5 cut(s) 172, 463, 580, 630, 1152
BtsIMutI CAGTG 2 cut(s) 837, 1311
Cac8I GCNNGC 3 cut(s) 432, 642, 991
CfoI GCGC 2 cut(s) 254, 656
Cfr13I GGNCC 1 cut(s) 706
CseI GACGC 1 cut(s) 245
Csp6I GTAC 3 cut(s) 540, 875, 1012
CspCI CAANNNNNGTGG 2 cut(s) 1021, 1056
CviAII CATG 4 cut(s) 176, 361, 376, 923
CviQI GTAC 3 cut(s) 540, 875, 1012
DdeI CTNAG 3 cut(s) 900, 1100, 1273
DpnI GATC 8 cut(s) 245, 309, 333, 681, 696, 1038, 1098, 1179
DpnII GATC 8 cut(s) 243, 307, 331, 679, 694, 1036, 1096, 1177
EaeI YGGCCR 8 cut(s) 172, 322, 421, 481, 666, 1042, 1113, 1146
EagI CGGCCG 2 cut(s) 666, 1146
Eam1104I CTCTTC 4 cut(s) 564, 747, 1223, 1299
EarI CTCTTC 4 cut(s) 564, 747, 1223, 1299
EclXI CGGCCG 2 cut(s) 666, 1146
Eco130I CCWWGG 2 cut(s) 453, 1258
Eco47I GGWCC 1 cut(s) 706
Eco52I CGGCCG 2 cut(s) 666, 1146
Eco72I CACGTG 1 cut(s) 479
EcoRI GAATTC 1 cut(s) 103
EcoT14I CCWWGG 2 cut(s) 453, 1258
ErhI CCWWGG 2 cut(s) 453, 1258
FaeI CATG 4 cut(s) 179, 364, 379, 926
FalI AAGNNNNNCTT 4 cut(s) 1178, 1210, 1278, 1310
FaqI GGGAC 1 cut(s) 732
FatI CATG 4 cut(s) 175, 360, 375, 922
FauI CCCGC 1 cut(s) 682
FbaI TGATCA 1 cut(s) 331
FblI GTMKAC 2 cut(s) 56, 1254
Fnu4HI GCNGC 1 cut(s) 1149
FokI GGATG 5 cut(s) 179, 470, 567, 637, 1139
Fsp4HI GCNGC 1 cut(s) 1149
FspBI CTAG 4 cut(s) 548, 731, 843, 965
GlaI GCGC 2 cut(s) 253, 655
GluI GCNGC 1 cut(s) 1149
GsuI CTGGAG 1 cut(s) 1034
HaeIII GGCC 8 cut(s) 174, 324, 423, 483, 668, 1044, 1115, 1148
HgaI GACGC 1 cut(s) 245
HhaI GCGC 2 cut(s) 254, 656
Hin1I GRCGYC 1 cut(s) 237
Hin1II CATG 4 cut(s) 179, 364, 379, 926
Hin6I GCGC 2 cut(s) 252, 654
HinP1I GCGC 2 cut(s) 252, 654
HincII GTYRAC 1 cut(s) 1255
HindII GTYRAC 1 cut(s) 1255
HinfI GANTC 4 cut(s) 257, 527, 745, 1198
HphI GGTGA 4 cut(s) 245, 401, 704, 1174
Hpy166II GTNNAC 3 cut(s) 57, 1032, 1255
Hpy188I TCNGA 7 cut(s) 208, 283, 298, 596, 803, 1101, 1157
Hpy188III TCNNGA 7 cut(s) 311, 531, 731, 749, 965, 1051, 1240
Hpy8I GTNNAC 3 cut(s) 57, 1032, 1255
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 4 cut(s) 266, 853, 1070, 1074
HpyCH4III ACNGT 4 cut(s) 130, 799, 807, 832
HpyCH4IV ACGT 3 cut(s) 37, 203, 478
HpyCH4V TGCA 4 cut(s) 9, 403, 476, 1267
HpyF10VI GCNNNNNNNGC 4 cut(s) 260, 932, 1090, 1289
HpyF3I CTNAG 3 cut(s) 900, 1100, 1273
HpySE526I ACGT 3 cut(s) 37, 203, 478
Hsp92I GRCGYC 1 cut(s) 237
Hsp92II CATG 4 cut(s) 179, 364, 379, 926
HspAI GCGC 2 cut(s) 252, 654
Ksp22I TGATCA 1 cut(s) 331
Kzo9I GATC 8 cut(s) 243, 307, 331, 679, 694, 1036, 1096, 1177
LguI GCTCTTC 2 cut(s) 564, 1299
LmnI GCTCC 1 cut(s) 661
LpnPI CCDG 7 cut(s) 216, 503, 518, 887, 975, 1040, 1064
LweI GCATC 6 cut(s) 18, 169, 426, 463, 1245, 1270
MaeI CTAG 4 cut(s) 548, 731, 843, 965
MaeII ACGT 3 cut(s) 37, 203, 478
MaeIII GTNAC 5 cut(s) 109, 233, 832, 1138, 1299
MalI GATC 8 cut(s) 245, 309, 333, 681, 696, 1038, 1098, 1179
MboI GATC 8 cut(s) 243, 307, 331, 679, 694, 1036, 1096, 1177
MboII GAAGA 9 cut(s) 43, 296, 551, 654, 764, 1072, 1240, 1286, 1289
MflI RGATCY 1 cut(s) 1177
MhlI GDGCHC 1 cut(s) 1095
MlsI TGGCCA 2 cut(s) 174, 1044
MluCI AATT 5 cut(s) 103, 210, 551, 716, 943
MluNI TGGCCA 2 cut(s) 174, 1044
MlyI GAGTC 2 cut(s) 251, 754
Mox20I TGGCCA 2 cut(s) 174, 1044
MroXI GAANNNNTTC 2 cut(s) 86, 1293
MscI TGGCCA 2 cut(s) 174, 1044
Msp20I TGGCCA 2 cut(s) 174, 1044
MspA1I CMGCKG 1 cut(s) 689
MvnI CGCG 1 cut(s) 254
MwoI GCNNNNNNNGC 4 cut(s) 260, 932, 1090, 1289
NdeII GATC 8 cut(s) 243, 307, 331, 679, 694, 1036, 1096, 1177
NlaIII CATG 4 cut(s) 179, 364, 379, 926
NmeAIII GCCGAG 3 cut(s) 239, 509, 694
NmuCI GTSAC 5 cut(s) 109, 233, 832, 1138, 1299
PciSI GCTCTTC 2 cut(s) 564, 1299
PcsI WCGNNNNNNNCGW 1 cut(s) 1214
PdmI GAANNNNTTC 2 cut(s) 86, 1293
PfeI GAWTC 2 cut(s) 527, 1198
PflMI CCANNNNNTGG 1 cut(s) 511
PkrI GCNGC 1 cut(s) 1150
PleI GAGTC 2 cut(s) 251, 753
PmaCI CACGTG 1 cut(s) 479
PmlI CACGTG 1 cut(s) 479
PpsI GAGTC 2 cut(s) 251, 753
Ppu21I YACGTR 1 cut(s) 479
PspCI CACGTG 1 cut(s) 479
PspPI GGNCC 1 cut(s) 706
PsuI RGATCY 1 cut(s) 1177
RsaI GTAC 3 cut(s) 541, 876, 1013
RsaNI GTAC 3 cut(s) 540, 875, 1012
SalI GTCGAC 1 cut(s) 1253
SapI GCTCTTC 2 cut(s) 564, 1299
SatI GCNGC 1 cut(s) 1149
Sau3AI GATC 8 cut(s) 243, 307, 331, 679, 694, 1036, 1096, 1177
Sau96I GGNCC 1 cut(s) 706
ScaI AGTACT 1 cut(s) 876
SchI GAGTC 2 cut(s) 251, 754
SduI GDGCHC 1 cut(s) 1095
SfaNI GCATC 6 cut(s) 18, 169, 426, 463, 1245, 1270
SinI GGWCC 1 cut(s) 706
SmlI CTYRAG 1 cut(s) 791
SmoI CTYRAG 1 cut(s) 791
Sse9I AATT 5 cut(s) 103, 210, 551, 716, 943
SsiI CCGC 4 cut(s) 254, 689, 866, 1149
SspMI CTAG 4 cut(s) 548, 731, 843, 965
StyI CCWWGG 2 cut(s) 453, 1258
TaaI ACNGT 4 cut(s) 130, 799, 807, 832
TaiI ACGT 3 cut(s) 40, 206, 481
TaqI TCGA 8 cut(s) 29, 61, 90, 242, 413, 532, 1095, 1254
TaqII GACCGA 3 cut(s) 851, 1198, 1287
TasI AATT 5 cut(s) 103, 210, 551, 716, 943
TatI WGTACW 2 cut(s) 539, 874
TauI GCSGC 1 cut(s) 1151
TfiI GAWTC 2 cut(s) 527, 1198
TscAI CASTG 2 cut(s) 837, 1318
TseFI GTSAC 5 cut(s) 109, 233, 832, 1138, 1299
Tsp45I GTSAC 5 cut(s) 109, 233, 832, 1138, 1299
TspDTI ATGAA 2 cut(s) 911, 930
TspGWI ACGGA 1 cut(s) 137
TspRI CASTG 2 cut(s) 837, 1318
Van91I CCANNNNNTGG 1 cut(s) 511
VpaK11BI GGWCC 1 cut(s) 706
XapI RAATTY 2 cut(s) 103, 943
XbaI TCTAGA 2 cut(s) 730, 964
XmiI GTMKAC 2 cut(s) 56, 1254
XmnI GAANNNNTTC 2 cut(s) 86, 1293
XspI CTAG 4 cut(s) 548, 731, 843, 965
ZrmI AGTACT 1 cut(s) 876
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.