RchiOBHm_Chr2g0121071

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000063
Physical Location & Seq
Reverse (-)
33937034 .. 33940193
3160 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ49363

Sequence Viewer

Length: 2721 bp
ATGAATAGAATAACACAACGAGTCCTGAATGAAGGTGGGGTACGTCAACTTGGCCTAAGTTTCCAGAGTGATATACCGGCTGATGTGGAAAAAATTTTGAGCCAGCATGAAGTGGATGATTCTAGCTATTTCAGTGAAGGAAAAGCATGGGGAGCATGGGGAACAAAACCAGGAAAATGGCCTGGTGAAACGGCCAACTGGATTCCGTGGGTAAAACGAGTCGAGAAGCGATTTGGGGAAATATGGAAACGACTTGAGATCTATGACGCCATCAAGCTGTCCACCATTACTATTCCTTGTGACCGCTCCTTGCTGGCTGCCGCTATGTGTTTTTGGAGTTCTCAAACAAACTCTCTGGAGCTTCAGTTTGGTGCACTTAGTCCGACCTTGATTGATATAGCGGCCATTATAGGCCTGCCGCCACATGGGCAAGTGGTGGACATTGTATTTGCAGAAGGAAAGTTTGACATTGATCTTGGTGGTGAGCTAAGAGATCGAAGTAAGGGCAGACCAGCCGTTGCCAATTATAATACATGGATTGAGGTGTTTAACAGCGGCTTGGGAAATAAGTCACTTGATAGTATTGGCAGTCCAGAAGAGAGAGAGGAAAACCAGCAGGAGACAATGGAAGTAACTCATGTAGAGCATGCTGCGTTTCTTGCCTTTTGGATATGTAAGTACTTAGTGTGCACAACTTCTAAAAAAGTAAATGTGGAGTACTACAAGTTGGCTGAAGCATTAGCAAGTAAAGAAGTACAAGAGAGCGATCAGCTATTGGCTCTTGGTCCATTTGTGCTCGCCCACTTATACAGATGTCTTCACCATTGTGTGACCGAAGGACTGAACCCAAATTGGTCTGGGCCATTATGGATTTTTCAGTTGTGGCTGCACTCTTACTTTCCCACTTTCAGACAGCCGGGTTTAGCATTGGCCGTAGACACCACTCTTGGACAACAATTGGCCCCTCTTGATTTACTTCCTCACTCGGCAGAAGAGTGTTTTGAGGTGTTGTTCAAGTGTTCAGAGTTTTCTGTAGAACAGTTTGTCGTTTGTTTCAGTAGGAAGTATCCATCCTACCTTGCAATGGATATCAGCCAACACGCCTCAGAAAGTGAGACGAGATGGGAGACTGCGTGTTCAGCTTGGAAGAGTGCAATAGGTATGAGGGATCTCTTCTGGGGTGTCTTGTCTGGTAAAACACTCAAGTGTGGAGTGGAGTTATATTCACCATCCTATTTCAGTCGTCAGTTGGGATATTATCAAGCTATACCAGCTCCGGTGCCAGAATCGTCAAACCGATATAGTTCATTGCGAGCCATTTTCTCCAACAAGGACGACATTGAGCAGAATAACAAGGCGTTTGTGTACAACATGAGCTTTCCCATGAAGACAAGAGTAGCAACTAGCAAGAGTTCCTCCCAGTTCAGAGAGTGGTGGGCGAAAAGAGTAGGTAGCCGCTTTAAAGATGGGTTGGTGTCGGCTAGGCGATCGGCTTTTGCAGGAAATCCATGGGCACAAGAGAAGCCGAAAGCTGTAAGGCGTGGTAAAATAACAAGCAAAGTTGCTAGAGCAATCCCAACTATAAGTGGCCAAGAATCTTTGAAGAAGTGTGCTAAAGGGAGCACAAAGAGAAAGGCCATCCATAGTGCGGCCACTGAGGCGGCCAAAGATGGTGCCACTTTGTCTTCAACGTCTCAATCTCCTCCAGCGAAACAACCGGTAACACAAGATGAGCAATCGTCTGAGAGCGAAGAACAATTGTGCGTGGCCAAACGAAGTTGCCTAGAGACAATCAAGAAGGCCAACGTCCAAAATGCCATTCCTAGTGAAACAGAGGAATCCATGGAAATAACCATTGATAAAGATGGCCAACCAAGTAGTGGCGAACCTGTGGGGGAGATAATTTCTCTTGAAAGAATGGCTGAAAGCGAAGCTGTGACAAGGAATATGGAAGAAACACTTGTGCTCACCCAAACTTCAACGCAAGCCAGTATTCCCTCCTCGTCGTTTAGTGAGCAACACCTGGTGTTGGCTAATGAACTAGAATGTAATCAAGGATTTGAAGCCGAACTTCAGGCTTTCATGAGGGCATTTTCGGCCGATGCTCTAATCCAACCAGAATGTTGCTCGGCCATTTTGCAGTTACCGGCCACTCAATTGACATCAAGGGAGGAAATTGATGGGGCTTTGAAGGTGGTAAAGGAAGCGTTAACGCAGCCATTAAAAGAATTTGTGGAAACAGGCCAACTATCAAAAGTGAAAGTGGCCATGGATTTGTTACTTGGAGCCAAATACTTTGCCCCTCCCAAGGTAGCTCTTATTGGTGGGAAGTTAGAAGTGTTGACCCAAAAAATATCCCGTGTAGCTGGTTCTTACCAAGAAATAGAAAAGAGGAGACAACAAATCTCGGCTTGTGAGCAAATGAAGAAAGCCTTGGTTCCCGAGTTTGGGTGGTGTATGGAACAAAAACGGGTTGTGGAGTCTCTTGAAGGCAAGATAAATGAGTTGGAAAGACAATTGGCATCCTTGAAACAAGAGAGACAAGAAGTGGGGGAAAAGCTCCTTCAGAGGAGTAAGCAGTGTTTCCAAAGCCAAGGACAACTGAAGAAGATAGAGGCCGATTTGAAAGCTTCCGAGCCTAGGTGTATGCAACTTGAGAGTGACCTTCAGGCCACTAGTTGTACCTTGGGAGCTCTTAATGATTTATTAGCCGAGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

906

Amino Acids

100.9

Weight (kDa)

5.89

Isoelectric Point (pI)

51.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 87 - 479 2.3e-35 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 528
AccB1I GGYRCC 2 cut(s) 1279, 1673
AccB7I CCANNNNNTGG 1 cut(s) 1880
AccBSI CCGCTC 1 cut(s) 306
AccI GTMKAC 1 cut(s) 936
AciI CCGC 8 cut(s) 304, 321, 401, 419, 555, 1456, 1649, 1661
AclWI GGATC 1 cut(s) 1176
AcsI RAATTY 2 cut(s) 93, 2228
AcuI CTGAAG 6 cut(s) 347, 753, 2057, 2549, 2624, 2651
AcyI GRCGYC 1 cut(s) 267
AdeI CACNNNGTG 1 cut(s) 2026
AfaI GTAC 6 cut(s) 42, 680, 719, 756, 1367, 2683
AfiI CCNNNNNNNGG 9 cut(s) 425, 1084, 1648, 1880, 2029, 2308, 2447, 2448, 2640
AgeI ACCGGT 1 cut(s) 1717
AhlI ACTAGT 1 cut(s) 2675
AjnI CCWGG 3 cut(s) 169, 181, 2022
AjuI GAANNNNNNNTTGG 4 cut(s) 1803, 1835, 2417, 2449
AleI CACNNNNGTG 2 cut(s) 825, 1204
Alw21I GWGCWC 6 cut(s) 376, 692, 798, 1625, 1968, 2695
Alw26I GTCTC 8 cut(s) 614, 1109, 1121, 1698, 1781, 2389, 2487, 2533
Alw44I GTGCAC 2 cut(s) 372, 688
AlwI GGATC 1 cut(s) 1176
Ama87I CYCGRG 1 cut(s) 2441
ApaLI GTGCAC 2 cut(s) 372, 688
ApeKI GCWGC 4 cut(s) 317, 650, 886, 2215
ApoI RAATTY 2 cut(s) 93, 2228
ArsI GACNNNNNNTTYG 2 cut(s) 431, 463
AsiGI ACCGGT 1 cut(s) 1717
AspA2I CCTAGG 1 cut(s) 2639
AspS9I GGNCC 3 cut(s) 785, 860, 961
AsuC2I CCSGG 1 cut(s) 918
AsuHPI GGTGA 5 cut(s) 197, 494, 812, 1218, 1960
AvaI CYCGRG 1 cut(s) 2441
AvaII GGWCC 1 cut(s) 785
AvrII CCTAGG 1 cut(s) 2639
BaeGI GKGCMC 3 cut(s) 376, 692, 1516
BalI TGGCCA 4 cut(s) 1590, 1769, 1869, 2267
BanI GGYRCC 2 cut(s) 1279, 1673
BanII GRGCYC 1 cut(s) 2695
BarI GAAGNNNNNNTAC 2 cut(s) 24, 56
BbsI GAAGAC 3 cut(s) 809, 1394, 1677
Bbv12I GWGCWC 6 cut(s) 376, 692, 798, 1625, 1968, 2695
BbvI GCAGC 4 cut(s) 304, 637, 873, 2227
BccI CCATC 9 cut(s) 278, 1078, 1116, 1237, 1460, 1646, 1664, 1859, 2174
BceAI ACGGC 3 cut(s) 207, 500, 917
BciT130I CCWGG 3 cut(s) 171, 183, 2024
BciVI GTATCC 1 cut(s) 1077
BcnI CCSGG 1 cut(s) 918
BcoDI GTCTC 8 cut(s) 614, 1109, 1121, 1698, 1781, 2389, 2487, 2533
BcuI ACTAGT 1 cut(s) 2675
BfaI CTAG 9 cut(s) 123, 1404, 1482, 1566, 1784, 1824, 2042, 2640, 2676
BfmI CTRYAG 1 cut(s) 1032
BfuI GTATCC 1 cut(s) 1077
BglI GCCNNNNNGGC 2 cut(s) 427, 1658
BglII AGATCT 1 cut(s) 258
BlnI CCTAGG 1 cut(s) 2639
BmcAI AGTACT 2 cut(s) 680, 719
Bme1390I CCNGG 4 cut(s) 171, 183, 918, 2024
Bme18I GGWCC 1 cut(s) 785
BmeT110I CYCGRG 1 cut(s) 2441
BmgT120I GGNCC 3 cut(s) 785, 860, 961
BmiI GGNNCC 5 cut(s) 963, 1281, 1675, 2287, 2439
BmrFI CCNGG 4 cut(s) 171, 183, 918, 2024
BmrI ACTGGG 1 cut(s) 1414
BmsI GCATC 2 cut(s) 2092, 2531
BmuI ACTGGG 1 cut(s) 1414
BpiI GAAGAC 3 cut(s) 809, 1394, 1677
BpmI CTGGAG 2 cut(s) 377, 1689
BpuEI CTTGAG 3 cut(s) 275, 1187, 2675
BpuMI CCSGG 1 cut(s) 918
BsaHI GRCGYC 1 cut(s) 267
BsaWI WCCGGW 2 cut(s) 1276, 1717
BsaXI ACNNNNNCTCC 4 cut(s) 350, 380, 1118, 1148
Bsc4I CCNNNNNNNGG 9 cut(s) 425, 1084, 1648, 1880, 2029, 2308, 2447, 2448, 2640
Bse118I RCCGGY 3 cut(s) 76, 1717, 2146
Bse1I ACTGG 3 cut(s) 203, 1420, 1989
Bse3DI GCAATG 2 cut(s) 1089, 1307
BseBI CCWGG 3 cut(s) 171, 183, 2024
BseGI GGATG 5 cut(s) 121, 1070, 1229, 1638, 2522
BseLI CCNNNNNNNGG 9 cut(s) 425, 1084, 1648, 1880, 2029, 2308, 2447, 2448, 2640
BseMI GCAATG 2 cut(s) 1089, 1307
BseMII CTCAG 3 cut(s) 1119, 1647, 1734
BseNI ACTGG 3 cut(s) 203, 1420, 1989
BseRI GAGGAG 4 cut(s) 1692, 1990, 2407, 2584
BseSI GKGCMC 3 cut(s) 376, 692, 1516
BseX3I CGGCCG 1 cut(s) 2097
BseXI GCAGC 4 cut(s) 304, 637, 873, 2227
BsgI GTGCAG 1 cut(s) 872
Bsh1285I CGRYCG 2 cut(s) 1490, 2100
BshNI GGYRCC 2 cut(s) 1279, 1673
BshTI ACCGGT 1 cut(s) 1717
BsiEI CGRYCG 2 cut(s) 1490, 2100
BsiHKAI GWGCWC 6 cut(s) 376, 692, 798, 1625, 1968, 2695
BsiHKCI CYCGRG 1 cut(s) 2441
BsiSI CCGG 5 cut(s) 77, 917, 1277, 1718, 2147
BslI CCNNNNNNNGG 9 cut(s) 425, 1084, 1648, 1880, 2029, 2308, 2447, 2448, 2640
BsmAI GTCTC 8 cut(s) 614, 1109, 1121, 1698, 1781, 2389, 2487, 2533
BsmBI CGTCTC 2 cut(s) 1109, 1698
BsoBI CYCGRG 1 cut(s) 2441
Bsp1286I GDGCHC 7 cut(s) 376, 692, 798, 1516, 1625, 1968, 2695
Bsp1407I TGTACA 1 cut(s) 1365
Bsp143I GATC 6 cut(s) 258, 472, 493, 766, 1168, 1487
Bsp19I CCATGG 3 cut(s) 1508, 1842, 2268
BspACI CCGC 8 cut(s) 304, 321, 401, 419, 555, 1456, 1649, 1661
BspCNI CTCAG 3 cut(s) 1118, 1648, 1735
BspHI TCATGA 1 cut(s) 2082
BspLI GGNNCC 5 cut(s) 963, 1281, 1675, 2287, 2439
BspPI GGATC 1 cut(s) 1176
BspT107I GGYRCC 2 cut(s) 1279, 1673
BsrBI CCGCTC 1 cut(s) 306
BsrDI GCAATG 2 cut(s) 1089, 1307
BsrFI RCCGGY 3 cut(s) 76, 1717, 2146
BsrGI TGTACA 1 cut(s) 1365
BsrI ACTGG 3 cut(s) 203, 1420, 1989
BssAI RCCGGY 3 cut(s) 76, 1717, 2146
BssMI GATC 6 cut(s) 258, 472, 493, 766, 1168, 1487
BssNI GRCGYC 1 cut(s) 267
BssT1I CCWWGG 8 cut(s) 1508, 1842, 2268, 2307, 2433, 2593, 2639, 2685
Bst2UI CCWGG 3 cut(s) 171, 183, 2024
Bst4CI ACNGT 1 cut(s) 1041
Bst6I CTCTTC 4 cut(s) 591, 987, 1142, 1178
BstACI GRCGYC 1 cut(s) 267
BstAUI TGTACA 1 cut(s) 1365
BstC8I GCNNGC 7 cut(s) 104, 315, 416, 648, 798, 1314, 1986
BstDEI CTNAG 7 cut(s) 56, 377, 488, 682, 1105, 1656, 1743
BstDSI CCRYGG 4 cut(s) 206, 1508, 1842, 2268
BstF5I GGATG 5 cut(s) 121, 1070, 1229, 1638, 2522
BstKTI GATC 6 cut(s) 261, 475, 496, 769, 1171, 1490
BstMAI GTCTC 8 cut(s) 614, 1109, 1121, 1698, 1781, 2389, 2487, 2533
BstMBI GATC 6 cut(s) 258, 472, 493, 766, 1168, 1487
BstMCI CGRYCG 2 cut(s) 1490, 2100
BstMWI GCNNNNNNNGC 7 cut(s) 152, 427, 659, 1139, 1271, 1658, 2096
BstNI CCWGG 3 cut(s) 171, 183, 2024
BstNSI RCATGY 1 cut(s) 650
BstSCI CCNGG 4 cut(s) 169, 181, 916, 2022
BstSFI CTRYAG 1 cut(s) 1032
BstSLI GKGCMC 3 cut(s) 376, 692, 1516
BstV1I GCAGC 4 cut(s) 304, 637, 873, 2227
BstV2I GAAGAC 3 cut(s) 809, 1394, 1677
BstX2I RGATCY 2 cut(s) 258, 1168
BstXI CCANNNNNNTGG 1 cut(s) 177
BstYI RGATCY 2 cut(s) 258, 1168
BstZI CGGCCG 1 cut(s) 2097
BsuI GTATCC 1 cut(s) 1077
BtgI CCRYGG 4 cut(s) 206, 1508, 1842, 2268
BtsCI GGATG 5 cut(s) 121, 1070, 1229, 1638, 2522
BtsI GCAGTG 1 cut(s) 2585
BtsIMutI CAGTG 3 cut(s) 139, 1653, 2585
Cac8I GCNNGC 7 cut(s) 104, 315, 416, 648, 798, 1314, 1986
CciI TCATGA 1 cut(s) 2082
Cfr10I RCCGGY 3 cut(s) 76, 1717, 2146
Cfr13I GGNCC 3 cut(s) 785, 860, 961
CseI GACGC 1 cut(s) 275
CsiI ACCWGGT 1 cut(s) 2022
Csp6I GTAC 6 cut(s) 41, 679, 718, 755, 1366, 2682
CspAI ACCGGT 1 cut(s) 1717
CviQI GTAC 6 cut(s) 41, 679, 718, 755, 1366, 2682
DdeI CTNAG 7 cut(s) 56, 377, 488, 682, 1105, 1656, 1743
DpnI GATC 6 cut(s) 260, 474, 495, 768, 1170, 1489
DpnII GATC 6 cut(s) 258, 472, 493, 766, 1168, 1487
DraI TTTAAA 1 cut(s) 1462
DraIII CACNNNGTG 1 cut(s) 2026
EagI CGGCCG 1 cut(s) 2097
Eam1104I CTCTTC 4 cut(s) 591, 987, 1142, 1178
EarI CTCTTC 4 cut(s) 591, 987, 1142, 1178
Ecl136II GAGCTC 1 cut(s) 2693
EclXI CGGCCG 1 cut(s) 2097
Eco130I CCWWGG 8 cut(s) 1508, 1842, 2268, 2307, 2433, 2593, 2639, 2685
Eco147I AGGCCT 1 cut(s) 414
Eco24I GRGCYC 1 cut(s) 2695
Eco32I GATATC 1 cut(s) 1090
Eco47I GGWCC 1 cut(s) 785
Eco52I CGGCCG 1 cut(s) 2097
Eco53kI GAGCTC 1 cut(s) 2693
Eco57I CTGAAG 6 cut(s) 347, 753, 2057, 2549, 2624, 2651
Eco88I CYCGRG 1 cut(s) 2441
EcoICRI GAGCTC 1 cut(s) 2693
EcoRII CCWGG 3 cut(s) 169, 181, 2022
EcoRV GATATC 1 cut(s) 1090
EcoT14I CCWWGG 8 cut(s) 1508, 1842, 2268, 2307, 2433, 2593, 2639, 2685
EcoT38I GRGCYC 1 cut(s) 2695
ErhI CCWWGG 8 cut(s) 1508, 1842, 2268, 2307, 2433, 2593, 2639, 2685
Esp3I CGTCTC 2 cut(s) 1109, 1698
FalI AAGNNNNNCTT 6 cut(s) 1944, 1976, 2055, 2087, 2417, 2449
FblI GTMKAC 1 cut(s) 936
FokI GGATG 5 cut(s) 128, 1057, 1216, 1625, 2509
FriOI GRGCYC 1 cut(s) 2695
FspBI CTAG 9 cut(s) 123, 1404, 1482, 1566, 1784, 1824, 2042, 2640, 2676
GsuI CTGGAG 2 cut(s) 377, 1689
HapII CCGG 5 cut(s) 77, 917, 1277, 1718, 2147
HgaI GACGC 1 cut(s) 275
Hin1I GRCGYC 1 cut(s) 267
HincII GTYRAC 3 cut(s) 47, 2211, 2343
HindII GTYRAC 3 cut(s) 47, 2211, 2343
HindIII AAGCTT 1 cut(s) 2628
HinfI GANTC 8 cut(s) 21, 119, 202, 219, 1286, 1595, 1838, 2480
HpaI GTTAAC 1 cut(s) 2211
HpaII CCGG 5 cut(s) 77, 917, 1277, 1718, 2147
HphI GGTGA 5 cut(s) 197, 494, 812, 1218, 1960
Hpy166II GTNNAC 9 cut(s) 47, 282, 374, 439, 690, 937, 1366, 2211, 2343
Hpy188I TCNGA 8 cut(s) 384, 911, 1024, 1108, 1427, 1744, 2568, 2635
Hpy8I GTNNAC 9 cut(s) 47, 282, 374, 439, 690, 937, 1366, 2211, 2343
Hpy99I CGWCG 1 cut(s) 2008
HpyAV CCTTC 9 cut(s) 26, 131, 449, 830, 1792, 2185, 2483, 2573, 2675
HpyCH4III ACNGT 1 cut(s) 1041
HpyCH4IV ACGT 3 cut(s) 43, 1691, 1806
HpyCH4V TGCA 9 cut(s) 374, 452, 690, 889, 1082, 1154, 1499, 2140, 2650
HpyF10VI GCNNNNNNNGC 7 cut(s) 152, 427, 659, 1139, 1271, 1658, 2096
HpyF3I CTNAG 7 cut(s) 56, 377, 488, 682, 1105, 1656, 1743
HpySE526I ACGT 3 cut(s) 43, 1691, 1806
Hsp92I GRCGYC 1 cut(s) 267
KspAI GTTAAC 1 cut(s) 2211
Kzo9I GATC 6 cut(s) 258, 472, 493, 766, 1168, 1487
LmnI GCTCC 8 cut(s) 152, 311, 358, 1279, 1620, 2285, 2565, 2690
Lsp1109I GCAGC 4 cut(s) 304, 637, 873, 2227
LweI GCATC 2 cut(s) 2092, 2531
MabI ACCWGGT 1 cut(s) 2022
MaeI CTAG 9 cut(s) 123, 1404, 1482, 1566, 1784, 1824, 2042, 2640, 2676
MaeII ACGT 3 cut(s) 43, 1691, 1806
MaeIII GTNAC 9 cut(s) 299, 570, 631, 829, 1720, 1936, 2142, 2277, 2660
MalI GATC 6 cut(s) 260, 474, 495, 768, 1170, 1489
MbiI CCGCTC 1 cut(s) 306
MboI GATC 6 cut(s) 258, 472, 493, 766, 1168, 1487
MfeI CAATTG 4 cut(s) 956, 1757, 2156, 2516
MflI RGATCY 2 cut(s) 258, 1168
MhlI GDGCHC 7 cut(s) 376, 692, 798, 1516, 1625, 1968, 2695
MlsI TGGCCA 4 cut(s) 1590, 1769, 1869, 2267
MluNI TGGCCA 4 cut(s) 1590, 1769, 1869, 2267
MlyI GAGTC 3 cut(s) 30, 228, 2489
MmeI TCCRAC 4 cut(s) 407, 1350, 2137, 2487
Mox20I TGGCCA 4 cut(s) 1590, 1769, 1869, 2267
MscI TGGCCA 4 cut(s) 1590, 1769, 1869, 2267
MseI TTAA 5 cut(s) 549, 1461, 2210, 2222, 2697
MslI CAYNNNNRTG 2 cut(s) 825, 1204
Msp20I TGGCCA 4 cut(s) 1590, 1769, 1869, 2267
MspA1I CMGCKG 1 cut(s) 555
MspI CCGG 5 cut(s) 77, 917, 1277, 1718, 2147
MspR9I CCNGG 4 cut(s) 171, 183, 918, 2024
MunI CAATTG 4 cut(s) 956, 1757, 2156, 2516
MvaI CCWGG 3 cut(s) 171, 183, 2024
MwoI GCNNNNNNNGC 7 cut(s) 152, 427, 659, 1139, 1271, 1658, 2096
NciI CCSGG 1 cut(s) 918
NcoI CCATGG 3 cut(s) 1508, 1842, 2268
NdeII GATC 6 cut(s) 258, 472, 493, 766, 1168, 1487
NlaIV GGNNCC 5 cut(s) 963, 1281, 1675, 2287, 2439
NmeAIII GCCGAG 3 cut(s) 965, 2108, 2387
NmuCI GTSAC 5 cut(s) 299, 570, 829, 1936, 2660
NspI RCATGY 1 cut(s) 650
OliI CACNNNNGTG 2 cut(s) 825, 1204
PaeI GCATGC 1 cut(s) 650
PagI TCATGA 1 cut(s) 2082
PceI AGGCCT 1 cut(s) 414
PfeI GAWTC 5 cut(s) 119, 202, 1286, 1595, 1838
PflMI CCANNNNNTGG 1 cut(s) 1880
PinAI ACCGGT 1 cut(s) 1717
Ple19I CGATCG 1 cut(s) 1490
PleI GAGTC 3 cut(s) 29, 227, 2488
PpsI GAGTC 3 cut(s) 29, 227, 2488
PsiI TTATAA 1 cut(s) 528
Psp124BI GAGCTC 1 cut(s) 2695
Psp6I CCWGG 3 cut(s) 169, 181, 2022
PspGI CCWGG 3 cut(s) 169, 181, 2022
PspN4I GGNNCC 5 cut(s) 963, 1281, 1675, 2287, 2439
PspPI GGNCC 3 cut(s) 785, 860, 961
PsuI RGATCY 2 cut(s) 258, 1168
PvuI CGATCG 1 cut(s) 1490
RsaI GTAC 6 cut(s) 42, 680, 719, 756, 1367, 2683
RsaNI GTAC 6 cut(s) 41, 679, 718, 755, 1366, 2682
RseI CAYNNNNRTG 2 cut(s) 825, 1204
SacI GAGCTC 1 cut(s) 2695
SaqAI TTAA 5 cut(s) 549, 1461, 2210, 2222, 2697
Sau3AI GATC 6 cut(s) 258, 472, 493, 766, 1168, 1487
Sau96I GGNCC 3 cut(s) 785, 860, 961
ScaI AGTACT 2 cut(s) 680, 719
SchI GAGTC 3 cut(s) 30, 228, 2489
ScrFI CCNGG 4 cut(s) 171, 183, 918, 2024
SduI GDGCHC 7 cut(s) 376, 692, 798, 1516, 1625, 1968, 2695
SexAI ACCWGGT 1 cut(s) 2022
SfaNI GCATC 2 cut(s) 2092, 2531
SfcI CTRYAG 1 cut(s) 1032
SinI GGWCC 1 cut(s) 785
SmiMI CAYNNNNRTG 2 cut(s) 825, 1204
SmlI CTYRAG 3 cut(s) 254, 1202, 2654
SmoI CTYRAG 3 cut(s) 254, 1202, 2654
SpeI ACTAGT 1 cut(s) 2675
SphI GCATGC 1 cut(s) 650
SseBI AGGCCT 1 cut(s) 414
SsiI CCGC 8 cut(s) 304, 321, 401, 419, 555, 1456, 1649, 1661
SspMI CTAG 9 cut(s) 123, 1404, 1482, 1566, 1784, 1824, 2042, 2640, 2676
SstI GAGCTC 1 cut(s) 2695
StuI AGGCCT 1 cut(s) 414
StyD4I CCNGG 4 cut(s) 169, 181, 916, 2022
StyI CCWWGG 8 cut(s) 1508, 1842, 2268, 2307, 2433, 2593, 2639, 2685
TaaI ACNGT 1 cut(s) 1041
TaiI ACGT 3 cut(s) 46, 1694, 1809
TaqI TCGA 2 cut(s) 222, 496
TaqII GACCGA 1 cut(s) 848
TatI WGTACW 4 cut(s) 678, 717, 754, 1365
TauI GCSGC 7 cut(s) 323, 404, 421, 558, 1458, 1652, 1664
TfiI GAWTC 5 cut(s) 119, 202, 1286, 1595, 1838
Tru1I TTAA 5 cut(s) 549, 1461, 2210, 2222, 2697
Tru9I TTAA 5 cut(s) 549, 1461, 2210, 2222, 2697
TscAI CASTG 3 cut(s) 139, 1660, 2585
TseFI GTSAC 5 cut(s) 299, 570, 829, 1936, 2660
TseI GCWGC 4 cut(s) 317, 650, 886, 2215
Tsp45I GTSAC 5 cut(s) 299, 570, 829, 1936, 2660
TspDTI ATGAA 8 cut(s) 17, 45, 123, 1296, 1400, 2052, 2071, 2438
TspGWI ACGGA 1 cut(s) 195
TspRI CASTG 3 cut(s) 139, 1660, 2585
Van91I CCANNNNNTGG 1 cut(s) 1880
VneI GTGCAC 2 cut(s) 372, 688
VpaK11BI GGWCC 1 cut(s) 785
XapI RAATTY 2 cut(s) 93, 2228
XceI RCATGY 1 cut(s) 650
XcmI CCANNNNNNNNNTGG 1 cut(s) 1877
XmaJI CCTAGG 1 cut(s) 2639
XmiI GTMKAC 1 cut(s) 936
XspI CTAG 9 cut(s) 123, 1404, 1482, 1566, 1784, 1824, 2042, 2640, 2676
ZrmI AGTACT 2 cut(s) 680, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.