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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 51 |
| AccB1I | GGYRCC | 1 cut(s) | 274 |
| AccII | CGCG | 1 cut(s) | 123 |
| AciI | CCGC | 3 cut(s) | 121, 202, 518 |
| AclWI | GGATC | 2 cut(s) | 99, 346 |
| AcoI | YGGCCR | 1 cut(s) | 519 |
| AgeI | ACCGGT | 1 cut(s) | 277 |
| AhlI | ACTAGT | 1 cut(s) | 527 |
| AluBI | AGCT | 4 cut(s) | 158, 356, 485, 509 |
| AluI | AGCT | 4 cut(s) | 158, 356, 485, 509 |
| Alw21I | GWGCWC | 1 cut(s) | 358 |
| AlwI | GGATC | 2 cut(s) | 99, 346 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 47 |
| Ama87I | CYCGRG | 1 cut(s) | 235 |
| AoxI | GGCC | 2 cut(s) | 109, 519 |
| AsiGI | ACCGGT | 1 cut(s) | 277 |
| AspLEI | GCGC | 2 cut(s) | 52, 119 |
| AsuC2I | CCSGG | 2 cut(s) | 236, 237 |
| AsuHPI | GGTGA | 3 cut(s) | 238, 375, 467 |
| AvaI | CYCGRG | 1 cut(s) | 235 |
| BanI | GGYRCC | 1 cut(s) | 274 |
| BanII | GRGCYC | 1 cut(s) | 358 |
| BbsI | GAAGAC | 1 cut(s) | 444 |
| Bbv12I | GWGCWC | 1 cut(s) | 358 |
| BbvCI | CCTCAGC | 1 cut(s) | 510 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 200, 234 |
| BclI | TGATCA | 1 cut(s) | 130 |
| BcnI | CCSGG | 2 cut(s) | 236, 237 |
| BcuI | ACTAGT | 1 cut(s) | 527 |
| BfaI | CTAG | 3 cut(s) | 482, 528, 556 |
| BfoI | RGCGCY | 1 cut(s) | 120 |
| BisI | GCNGC | 1 cut(s) | 519 |
| BlsI | GCNGC | 1 cut(s) | 520 |
| Bme1390I | CCNGG | 2 cut(s) | 236, 237 |
| BmeT110I | CYCGRG | 1 cut(s) | 235 |
| BmiI | GGNNCC | 1 cut(s) | 276 |
| BmrFI | CCNGG | 2 cut(s) | 236, 237 |
| BmsI | GCATC | 2 cut(s) | 505, 523 |
| BpiI | GAAGAC | 1 cut(s) | 444 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 308, 340 |
| BpmI | CTGGAG | 1 cut(s) | 525 |
| Bpu10I | CCTNAGC | 2 cut(s) | 113, 510 |
| BpuMI | CCSGG | 2 cut(s) | 236, 237 |
| BsaJI | CCNNGG | 2 cut(s) | 235, 309 |
| BsaWI | WCCGGW | 1 cut(s) | 277 |
| Bse118I | RCCGGY | 1 cut(s) | 277 |
| Bse3DI | GCAATG | 1 cut(s) | 265 |
| BseDI | CCNNGG | 2 cut(s) | 235, 309 |
| BseGI | GGATG | 1 cut(s) | 520 |
| BseMI | GCAATG | 1 cut(s) | 265 |
| BseMII | CTCAG | 3 cut(s) | 98, 104, 501 |
| BseX3I | CGGCCG | 1 cut(s) | 519 |
| Bsh1236I | CGCG | 1 cut(s) | 123 |
| Bsh1285I | CGRYCG | 1 cut(s) | 522 |
| BshFI | GGCC | 2 cut(s) | 111, 521 |
| BshNI | GGYRCC | 1 cut(s) | 274 |
| BshTI | ACCGGT | 1 cut(s) | 277 |
| BsiEI | CGRYCG | 1 cut(s) | 522 |
| BsiHKAI | GWGCWC | 1 cut(s) | 358 |
| BsiHKCI | CYCGRG | 1 cut(s) | 235 |
| BsiSI | CCGG | 3 cut(s) | 108, 236, 278 |
| BsnI | GGCC | 2 cut(s) | 111, 521 |
| BsoBI | CYCGRG | 1 cut(s) | 235 |
| Bsp1286I | GDGCHC | 1 cut(s) | 358 |
| Bsp143I | GATC | 3 cut(s) | 104, 130, 338 |
| BspACI | CCGC | 3 cut(s) | 121, 202, 518 |
| BspANI | GGCC | 2 cut(s) | 111, 521 |
| BspCNI | CTCAG | 3 cut(s) | 97, 105, 502 |
| BspFNI | CGCG | 1 cut(s) | 123 |
| BspLI | GGNNCC | 1 cut(s) | 276 |
| BspPI | GGATC | 2 cut(s) | 99, 346 |
| BspQI | GCTCTTC | 2 cut(s) | 309, 346 |
| BspT107I | GGYRCC | 1 cut(s) | 274 |
| BsrDI | GCAATG | 1 cut(s) | 265 |
| BsrFI | RCCGGY | 1 cut(s) | 277 |
| BssAI | RCCGGY | 1 cut(s) | 277 |
| BssECI | CCNNGG | 2 cut(s) | 235, 309 |
| BssMI | GATC | 3 cut(s) | 104, 130, 338 |
| BssT1I | CCWWGG | 1 cut(s) | 309 |
| Bst6I | CTCTTC | 2 cut(s) | 309, 346 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 281 |
| BstC8I | GCNNGC | 1 cut(s) | 121 |
| BstDEI | CTNAG | 3 cut(s) | 84, 113, 510 |
| BstF5I | GGATG | 1 cut(s) | 520 |
| BstFNI | CGCG | 1 cut(s) | 123 |
| BstH2I | RGCGCY | 1 cut(s) | 120 |
| BstHHI | GCGC | 2 cut(s) | 52, 119 |
| BstKTI | GATC | 3 cut(s) | 107, 133, 341 |
| BstMBI | GATC | 3 cut(s) | 104, 130, 338 |
| BstMCI | CGRYCG | 1 cut(s) | 522 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 281, 515 |
| BstSCI | CCNGG | 2 cut(s) | 234, 235 |
| BstUI | CGCG | 1 cut(s) | 123 |
| BstV2I | GAAGAC | 1 cut(s) | 444 |
| BstX2I | RGATCY | 1 cut(s) | 104 |
| BstYI | RGATCY | 1 cut(s) | 104 |
| BstZI | CGGCCG | 1 cut(s) | 519 |
| BsuRI | GGCC | 2 cut(s) | 111, 521 |
| BtsCI | GGATG | 1 cut(s) | 520 |
| BtsI | GCAGTG | 1 cut(s) | 45 |
| BtsIMutI | CAGTG | 1 cut(s) | 45 |
| Cac8I | GCNNGC | 1 cut(s) | 121 |
| CaiI | CAGNNNCTG | 1 cut(s) | 47 |
| CfoI | GCGC | 2 cut(s) | 52, 119 |
| Cfr10I | RCCGGY | 1 cut(s) | 277 |
| Cfr9I | CCCGGG | 1 cut(s) | 235 |
| CspAI | ACCGGT | 1 cut(s) | 277 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 143, 178 |
| CviAII | CATG | 2 cut(s) | 24, 499 |
| DdeI | CTNAG | 3 cut(s) | 84, 113, 510 |
| DpnI | GATC | 3 cut(s) | 106, 132, 340 |
| DpnII | GATC | 3 cut(s) | 104, 130, 338 |
| EaeI | YGGCCR | 1 cut(s) | 519 |
| EagI | CGGCCG | 1 cut(s) | 519 |
| Eam1104I | CTCTTC | 2 cut(s) | 309, 346 |
| EarI | CTCTTC | 2 cut(s) | 309, 346 |
| Ecl136II | GAGCTC | 1 cut(s) | 356 |
| EclXI | CGGCCG | 1 cut(s) | 519 |
| Eco130I | CCWWGG | 1 cut(s) | 309 |
| Eco24I | GRGCYC | 1 cut(s) | 358 |
| Eco52I | CGGCCG | 1 cut(s) | 519 |
| Eco53kI | GAGCTC | 1 cut(s) | 356 |
| Eco88I | CYCGRG | 1 cut(s) | 235 |
| EcoICRI | GAGCTC | 1 cut(s) | 356 |
| EcoT14I | CCWWGG | 1 cut(s) | 309 |
| EcoT38I | GRGCYC | 1 cut(s) | 358 |
| ErhI | CCWWGG | 1 cut(s) | 309 |
| FaeI | CATG | 2 cut(s) | 27, 502 |
| FaiI | YATR | 8 cut(s) | 25, 135, 226, 228, 428, 443, 461, 500 |
| FatI | CATG | 2 cut(s) | 23, 498 |
| FauI | CCCGC | 1 cut(s) | 128 |
| FbaI | TGATCA | 1 cut(s) | 130 |
| Fnu4HI | GCNGC | 1 cut(s) | 519 |
| FokI | GGATG | 1 cut(s) | 527 |
| FriOI | GRGCYC | 1 cut(s) | 358 |
| Fsp4HI | GCNGC | 1 cut(s) | 519 |
| FspBI | CTAG | 3 cut(s) | 482, 528, 556 |
| FspI | TGCGCA | 1 cut(s) | 51 |
| GlaI | GCGC | 2 cut(s) | 51, 118 |
| GluI | GCNGC | 1 cut(s) | 519 |
| GsuI | CTGGAG | 1 cut(s) | 525 |
| HaeII | RGCGCY | 1 cut(s) | 120 |
| HaeIII | GGCC | 2 cut(s) | 111, 521 |
| HapII | CCGG | 3 cut(s) | 108, 236, 278 |
| HhaI | GCGC | 2 cut(s) | 52, 119 |
| Hin1II | CATG | 2 cut(s) | 27, 502 |
| Hin6I | GCGC | 2 cut(s) | 50, 117 |
| HinP1I | GCGC | 2 cut(s) | 50, 117 |
| HincII | GTYRAC | 1 cut(s) | 168 |
| HindII | GTYRAC | 1 cut(s) | 168 |
| HindIII | AAGCTT | 1 cut(s) | 156 |
| HinfI | GANTC | 3 cut(s) | 82, 231, 412 |
| HpaII | CCGG | 3 cut(s) | 108, 236, 278 |
| HphI | GGTGA | 3 cut(s) | 238, 375, 467 |
| Hpy166II | GTNNAC | 3 cut(s) | 39, 168, 246 |
| Hpy188I | TCNGA | 1 cut(s) | 81 |
| Hpy188III | TCNNGA | 5 cut(s) | 6, 178, 348, 409, 504 |
| Hpy8I | GTNNAC | 3 cut(s) | 39, 168, 246 |
| HpyAV | CCTTC | 2 cut(s) | 265, 364 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 281, 515 |
| HpyF3I | CTNAG | 3 cut(s) | 84, 113, 510 |
| Hsp92II | CATG | 2 cut(s) | 27, 502 |
| HspAI | GCGC | 2 cut(s) | 50, 117 |
| Ksp22I | TGATCA | 1 cut(s) | 130 |
| Kzo9I | GATC | 3 cut(s) | 104, 130, 338 |
| LguI | GCTCTTC | 2 cut(s) | 309, 346 |
| LmnI | GCTCC | 1 cut(s) | 506 |
| LpnPI | CCDG | 8 cut(s) | 121, 125, 141, 249, 291, 399, 401, 489 |
| LweI | GCATC | 2 cut(s) | 505, 523 |
| MaeI | CTAG | 3 cut(s) | 482, 528, 556 |
| MaeIII | GTNAC | 3 cut(s) | 64, 381, 406 |
| MalI | GATC | 3 cut(s) | 106, 132, 340 |
| MboI | GATC | 3 cut(s) | 104, 130, 338 |
| MboII | GAAGA | 7 cut(s) | 12, 193, 280, 326, 363, 439, 449 |
| MflI | RGATCY | 1 cut(s) | 104 |
| MhlI | GDGCHC | 1 cut(s) | 358 |
| MluCI | AATT | 1 cut(s) | 94 |
| MlyI | GAGTC | 1 cut(s) | 76 |
| MmeI | TCCRAC | 1 cut(s) | 170 |
| MnlI | CCTC | 6 cut(s) | 23, 187, 329, 334, 505, 547 |
| MspI | CCGG | 3 cut(s) | 108, 236, 278 |
| MspR9I | CCNGG | 2 cut(s) | 236, 237 |
| MvnI | CGCG | 1 cut(s) | 123 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 281, 515 |
| NciI | CCSGG | 2 cut(s) | 236, 237 |
| NdeII | GATC | 3 cut(s) | 104, 130, 338 |
| NlaIII | CATG | 2 cut(s) | 27, 502 |
| NlaIV | GGNNCC | 1 cut(s) | 276 |
| NmuCI | GTSAC | 3 cut(s) | 64, 381, 406 |
| NsbI | TGCGCA | 1 cut(s) | 51 |
| PciSI | GCTCTTC | 2 cut(s) | 309, 346 |
| PfeI | GAWTC | 2 cut(s) | 231, 412 |
| PinAI | ACCGGT | 1 cut(s) | 277 |
| PkrI | GCNGC | 1 cut(s) | 520 |
| PleI | GAGTC | 1 cut(s) | 76 |
| PpsI | GAGTC | 1 cut(s) | 76 |
| Psp124BI | GAGCTC | 1 cut(s) | 358 |
| PspN4I | GGNNCC | 1 cut(s) | 276 |
| PstNI | CAGNNNCTG | 1 cut(s) | 47 |
| PsuI | RGATCY | 1 cut(s) | 104 |
| SacI | GAGCTC | 1 cut(s) | 358 |
| SapI | GCTCTTC | 2 cut(s) | 309, 346 |
| SatI | GCNGC | 1 cut(s) | 519 |
| Sau3AI | GATC | 3 cut(s) | 104, 130, 338 |
| SchI | GAGTC | 1 cut(s) | 76 |
| ScrFI | CCNGG | 2 cut(s) | 236, 237 |
| SduI | GDGCHC | 1 cut(s) | 358 |
| SetI | ASST | 9 cut(s) | 34, 130, 160, 326, 358, 375, 388, 487, 511 |
| SfaNI | GCATC | 2 cut(s) | 505, 523 |
| SmaI | CCCGGG | 1 cut(s) | 237 |
| SpeI | ACTAGT | 1 cut(s) | 527 |
| Sse9I | AATT | 1 cut(s) | 94 |
| SsiI | CCGC | 3 cut(s) | 121, 202, 518 |
| SspMI | CTAG | 3 cut(s) | 482, 528, 556 |
| SstI | GAGCTC | 1 cut(s) | 358 |
| StyD4I | CCNGG | 2 cut(s) | 234, 235 |
| StyI | CCWWGG | 1 cut(s) | 309 |
| TaqI | TCGA | 1 cut(s) | 290 |
| TaqII | GACCGA | 1 cut(s) | 394 |
| TasI | AATT | 1 cut(s) | 94 |
| TauI | GCSGC | 1 cut(s) | 521 |
| TfiI | GAWTC | 2 cut(s) | 231, 412 |
| TscAI | CASTG | 1 cut(s) | 52 |
| TseFI | GTSAC | 3 cut(s) | 64, 381, 406 |
| Tsp45I | GTSAC | 3 cut(s) | 64, 381, 406 |
| TspDTI | ATGAA | 1 cut(s) | 12 |
| TspMI | CCCGGG | 1 cut(s) | 235 |
| TspRI | CASTG | 1 cut(s) | 52 |
| XmaI | CCCGGG | 1 cut(s) | 235 |
| XspI | CTAG | 3 cut(s) | 482, 528, 556 |