RchiOBHm_Chr6g0253701

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000063
Physical Location & Seq
Reverse (-)
8843004 .. 8845287
2284 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ22751

Sequence Viewer

Length: 1635 bp
ATGGATATCAGCCAACACACCTCAGAAAGTGAGACGAGGTGGGAGACTGCGTGTTCAGCTTGGAAGAGTGCAATAGGTATGAGGGATCTCTTCTGGGGTGCCTTGTCTGGTAAAACACTCAAGTGTGGAGTGGAGTTATATTCACCATCCTACTTCAGTCGTCAGTTGGGATATTATCAAGCTATACCGGCTCCGGTGCCAGAATCGTCAAACCGATATAGTTCATTGCGAGCCGTTTTCTCCAACAAGGACGACATTGAGCAGAATAACAAGGCGTTTGTGTACAACATGAGCTTTCCCATGAAGACAAGAGTAGCAACTAGCAAGAGTTCCTCCCAGTTCAGAGAGTGGTGGGCGAAACGAGTAGGTAGCCGCTTTAAAGATGGGTTGGTGTCGGCTAGGCGATCGGCTTTTGCAGGAAATCCATGGGCACAAGAGAAGCCGAAAGCTGTAAGGCGTGGTAAAATAACAAGCAAGGTTGCTAGAGCAATCCCAACTATAAGTGGCCAAGAATCTTTGAAGAAGTGTGCTAAAGGGAGCACAAAGAGAAAGGCCAACCATAGTGCGGCCACTGAGGCGGCCAAAGATGGTGCCACTTTGTCTTCAACGTCTCAATCTCCTCCAGCGAAACGACCGGCAACACAAGATGAGCAATCTTCTGAGAGCGAAGAACGATTGTGCGTGGCCAAACGAAGTTGCCTAGAGACATTCAAGAAGGCCAACGTACAAAATGCCATTCCTAGTGAAATAGAGGAATCCGTGGAACTAACCATTGATAAAGATGGCCAACCAAGTAGTGATGAACCTGTGGGAGAGATAATTTCTCTTGAAAGAATGGCTGAAAGCGAAGTTGTGACAATGAATATGGAAGAAACACTTGTGCTCACCCAAACTTCAACGCAAGCCAGTATTCCCTCCTCGTCGCTTAGTGAGCAACACCTGGTGTTGGCTAATGAACTAGAAGGTAATCAAGGGTTTGAAGCCGAACTTCAGGCTTTCATGAGGGCATTTTCGGCCGATGCTCTAATCCAACCAGAATGCTGCTCGGCCATTTCGCAGTTACCAACCGCACACTTGACATCAAGGGAGGAAGTTGATGGGGCTCTAAAGGTGGTAAAGGAAGCGTTAGCGCAACCATTAAAAGAATTTGTGGAAACAAGCCAACTATCAAAAGTGAAAGTGGCCATGGATTTGTTACTTGGAGCCAAATACTTTGCCCCTCCCAAGGTAGCTCTCATTGGTGAGAAGCTAGAAGTGTTGACCCAACAAATATCCCGTGTAGCTGGTTCATACCAAGAAATAGAAAAAAGGAGACAACAAATCTTGGCTTGTGAGCAAATGAAGAAAGCCTTGGTTCCCGAGTTTGGGTGGTGTATGGAACAAAAACGGGTTGTGGAGTCTCTTGAAGGCAAGATAAATGAGTTGGAAAGACAATTGGCATCCTTGAAACAAGAGAGACAAGAAGTGGGGGAAAAGCTCCTTCAAAGGAGTAAGCAGTGTTTCCAAAGCCAAGGACAACTGAAGAAGATAGAGGCCGATTTGAAAACTTCTGAGCCTAGGTGTATACAACTTGAGAGTGACCTTCAGGATACTAGTTGTACCTTGGGAGCTCTTAAAGCTTTATTAGCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

544

Amino Acids

60.21

Weight (kDa)

7.86

Isoelectric Point (pI)

59.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 98, 196, 590
AccI GTMKAC 1 cut(s) 1564
AciI CCGC 4 cut(s) 373, 566, 578, 1068
AclWI GGATC 1 cut(s) 93
AcoI YGGCCR 8 cut(s) 505, 567, 579, 684, 784, 1014, 1047, 1182
AcsI RAATTY 1 cut(s) 1145
AcuI CTGAAG 4 cut(s) 139, 974, 1541, 1568
AdeI CACNNNGTG 1 cut(s) 943
AfaI GTAC 3 cut(s) 284, 726, 1600
AfiI CCNNNNNNNGG 5 cut(s) 565, 946, 1225, 1364, 1365
AhlI ACTAGT 1 cut(s) 1592
AjnI CCWGG 1 cut(s) 939
AjuI GAANNNNNNNTTGG 2 cut(s) 1334, 1366
AleI CACNNNNGTG 1 cut(s) 121
Alw21I GWGCWC 3 cut(s) 542, 885, 1612
Alw26I GTCTC 7 cut(s) 26, 38, 615, 698, 1306, 1404, 1450
AlwI GGATC 1 cut(s) 93
Ama87I CYCGRG 1 cut(s) 1358
ApeKI GCWGC 1 cut(s) 1041
ApoI RAATTY 1 cut(s) 1145
AspA2I CCTAGG 1 cut(s) 1556
AspLEI GCGC 1 cut(s) 1132
AsuHPI GGTGA 3 cut(s) 135, 877, 1253
AvaI CYCGRG 1 cut(s) 1358
AvrII CCTAGG 1 cut(s) 1556
BaeGI GKGCMC 1 cut(s) 433
BalI TGGCCA 4 cut(s) 507, 686, 786, 1184
BanI GGYRCC 3 cut(s) 98, 196, 590
BanII GRGCYC 2 cut(s) 1105, 1612
BbsI GAAGAC 2 cut(s) 311, 594
Bbv12I GWGCWC 3 cut(s) 542, 885, 1612
BbvI GCAGC 1 cut(s) 1028
BccI CCATC 5 cut(s) 154, 377, 581, 776, 1091
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 941
BciVI GTATCC 1 cut(s) 1582
BcoDI GTCTC 7 cut(s) 26, 38, 615, 698, 1306, 1404, 1450
BcuI ACTAGT 1 cut(s) 1592
BfaI CTAG 9 cut(s) 321, 399, 483, 701, 741, 959, 1250, 1557, 1593
BfuI GTATCC 1 cut(s) 1582
BglI GCCNNNNNGGC 1 cut(s) 575
BisI GCNGC 4 cut(s) 373, 567, 579, 1042
BlnI CCTAGG 1 cut(s) 1556
BlsI GCNGC 4 cut(s) 374, 568, 580, 1043
Bme1390I CCNGG 1 cut(s) 941
BmeT110I CYCGRG 1 cut(s) 1358
BmiI GGNNCC 6 cut(s) 100, 192, 198, 592, 1204, 1356
BmrFI CCNGG 1 cut(s) 941
BmrI ACTGGG 1 cut(s) 331
BmsI GCATC 2 cut(s) 1009, 1448
BmuI ACTGGG 1 cut(s) 331
BpiI GAAGAC 2 cut(s) 311, 594
BpmI CTGGAG 1 cut(s) 606
BpuEI CTTGAG 2 cut(s) 104, 1592
BsaJI CCNNGG 8 cut(s) 425, 759, 1185, 1224, 1350, 1510, 1556, 1602
BsaWI WCCGGW 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 35, 65
Bsc4I CCNNNNNNNGG 5 cut(s) 565, 946, 1225, 1364, 1365
Bse118I RCCGGY 2 cut(s) 187, 634
Bse1I ACTGG 2 cut(s) 337, 906
Bse3DI GCAATG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 941
BseDI CCNNGG 8 cut(s) 425, 759, 1185, 1224, 1350, 1510, 1556, 1602
BseGI GGATG 2 cut(s) 146, 1439
BseLI CCNNNNNNNGG 5 cut(s) 565, 946, 1225, 1364, 1365
BseMI GCAATG 1 cut(s) 224
BseMII CTCAG 4 cut(s) 36, 564, 651, 1542
BseNI ACTGG 2 cut(s) 337, 906
BseRI GAGGAG 2 cut(s) 609, 907
BseSI GKGCMC 1 cut(s) 433
BseX3I CGGCCG 1 cut(s) 1014
BseXI GCAGC 1 cut(s) 1028
Bsh1285I CGRYCG 3 cut(s) 407, 635, 1017
BshNI GGYRCC 3 cut(s) 98, 196, 590
BsiEI CGRYCG 3 cut(s) 407, 635, 1017
BsiHKAI GWGCWC 3 cut(s) 542, 885, 1612
BsiHKCI CYCGRG 1 cut(s) 1358
BsiSI CCGG 3 cut(s) 188, 194, 635
BslI CCNNNNNNNGG 5 cut(s) 565, 946, 1225, 1364, 1365
BsmAI GTCTC 7 cut(s) 26, 38, 615, 698, 1306, 1404, 1450
BsmBI CGTCTC 2 cut(s) 26, 615
BsmI GAATGC 1 cut(s) 1043
BsoBI CYCGRG 1 cut(s) 1358
Bsp1286I GDGCHC 5 cut(s) 433, 542, 885, 1105, 1612
Bsp1407I TGTACA 1 cut(s) 282
Bsp143I GATC 2 cut(s) 85, 404
Bsp19I CCATGG 2 cut(s) 425, 1185
BspACI CCGC 4 cut(s) 373, 566, 578, 1068
BspCNI CTCAG 4 cut(s) 35, 565, 652, 1543
BspHI TCATGA 1 cut(s) 999
BspLI GGNNCC 6 cut(s) 100, 192, 198, 592, 1204, 1356
BspPI GGATC 1 cut(s) 93
BspT107I GGYRCC 3 cut(s) 98, 196, 590
BsrDI GCAATG 1 cut(s) 224
BsrFI RCCGGY 2 cut(s) 187, 634
BsrGI TGTACA 1 cut(s) 282
BsrI ACTGG 2 cut(s) 337, 906
BssAI RCCGGY 2 cut(s) 187, 634
BssECI CCNNGG 8 cut(s) 425, 759, 1185, 1224, 1350, 1510, 1556, 1602
BssMI GATC 2 cut(s) 85, 404
BssNAI GTATAC 1 cut(s) 1565
BssT1I CCWWGG 7 cut(s) 425, 1185, 1224, 1350, 1510, 1556, 1602
Bst1107I GTATAC 1 cut(s) 1565
Bst2UI CCWGG 1 cut(s) 941
Bst6I CTCTTC 2 cut(s) 59, 95
BstAUI TGTACA 1 cut(s) 282
BstC8I GCNNGC 2 cut(s) 231, 903
BstDEI CTNAG 5 cut(s) 22, 573, 660, 926, 1551
BstDSI CCRYGG 3 cut(s) 425, 759, 1185
BstF5I GGATG 2 cut(s) 146, 1439
BstHHI GCGC 1 cut(s) 1132
BstKTI GATC 2 cut(s) 88, 407
BstMAI GTCTC 7 cut(s) 26, 38, 615, 698, 1306, 1404, 1450
BstMBI GATC 2 cut(s) 85, 404
BstMCI CGRYCG 3 cut(s) 407, 635, 1017
BstMWI GCNNNNNNNGC 7 cut(s) 56, 188, 575, 931, 1013, 1616, 1625
BstNI CCWGG 1 cut(s) 941
BstSCI CCNGG 1 cut(s) 939
BstSLI GKGCMC 1 cut(s) 433
BstV1I GCAGC 1 cut(s) 1028
BstV2I GAAGAC 2 cut(s) 311, 594
BstX2I RGATCY 1 cut(s) 85
BstYI RGATCY 1 cut(s) 85
BstZ17I GTATAC 1 cut(s) 1565
BstZI CGGCCG 1 cut(s) 1014
BsuI GTATCC 1 cut(s) 1582
BtgI CCRYGG 3 cut(s) 425, 759, 1185
BtsCI GGATG 2 cut(s) 146, 1439
BtsI GCAGTG 1 cut(s) 1502
BtsIMutI CAGTG 2 cut(s) 570, 1502
Cac8I GCNNGC 2 cut(s) 231, 903
CciI TCATGA 1 cut(s) 999
CfoI GCGC 1 cut(s) 1132
Cfr10I RCCGGY 2 cut(s) 187, 634
CsiI ACCWGGT 1 cut(s) 939
Csp6I GTAC 3 cut(s) 283, 725, 1599
CviAII CATG 5 cut(s) 289, 301, 426, 1000, 1186
CviQI GTAC 3 cut(s) 283, 725, 1599
DdeI CTNAG 5 cut(s) 22, 573, 660, 926, 1551
DpnI GATC 2 cut(s) 87, 406
DpnII GATC 2 cut(s) 85, 404
DraI TTTAAA 1 cut(s) 379
DraIII CACNNNGTG 1 cut(s) 943
EaeI YGGCCR 8 cut(s) 505, 567, 579, 684, 784, 1014, 1047, 1182
EagI CGGCCG 1 cut(s) 1014
Eam1104I CTCTTC 2 cut(s) 59, 95
EarI CTCTTC 2 cut(s) 59, 95
Ecl136II GAGCTC 1 cut(s) 1610
EclXI CGGCCG 1 cut(s) 1014
Eco130I CCWWGG 7 cut(s) 425, 1185, 1224, 1350, 1510, 1556, 1602
Eco24I GRGCYC 2 cut(s) 1105, 1612
Eco32I GATATC 1 cut(s) 7
Eco52I CGGCCG 1 cut(s) 1014
Eco53kI GAGCTC 1 cut(s) 1610
Eco57I CTGAAG 4 cut(s) 139, 974, 1541, 1568
Eco88I CYCGRG 1 cut(s) 1358
EcoICRI GAGCTC 1 cut(s) 1610
EcoRII CCWGG 1 cut(s) 939
EcoRV GATATC 1 cut(s) 7
EcoT14I CCWWGG 7 cut(s) 425, 1185, 1224, 1350, 1510, 1556, 1602
EcoT38I GRGCYC 2 cut(s) 1105, 1612
ErhI CCWWGG 7 cut(s) 425, 1185, 1224, 1350, 1510, 1556, 1602
Esp3I CGTCTC 2 cut(s) 26, 615
FaeI CATG 5 cut(s) 292, 304, 429, 1003, 1189
FalI AAGNNNNNCTT 6 cut(s) 861, 893, 972, 1004, 1334, 1366
FatI CATG 5 cut(s) 288, 300, 425, 999, 1185
FblI GTMKAC 1 cut(s) 1564
Fnu4HI GCNGC 4 cut(s) 373, 567, 579, 1042
FokI GGATG 2 cut(s) 133, 1426
FriOI GRGCYC 2 cut(s) 1105, 1612
Fsp4HI GCNGC 4 cut(s) 373, 567, 579, 1042
FspBI CTAG 9 cut(s) 321, 399, 483, 701, 741, 959, 1250, 1557, 1593
GlaI GCGC 1 cut(s) 1131
GluI GCNGC 4 cut(s) 373, 567, 579, 1042
GsuI CTGGAG 1 cut(s) 606
HapII CCGG 3 cut(s) 188, 194, 635
HhaI GCGC 1 cut(s) 1132
Hin1II CATG 5 cut(s) 292, 304, 429, 1003, 1189
Hin6I GCGC 1 cut(s) 1130
HinP1I GCGC 1 cut(s) 1130
HincII GTYRAC 1 cut(s) 1260
HindII GTYRAC 1 cut(s) 1260
HindIII AAGCTT 1 cut(s) 1617
HinfI GANTC 4 cut(s) 203, 512, 755, 1397
HpaII CCGG 3 cut(s) 188, 194, 635
HphI GGTGA 3 cut(s) 135, 877, 1253
Hpy166II GTNNAC 3 cut(s) 283, 1260, 1565
Hpy188I TCNGA 4 cut(s) 25, 344, 661, 1552
Hpy188III TCNNGA 6 cut(s) 712, 827, 1000, 1358, 1403, 1586
Hpy8I GTNNAC 3 cut(s) 283, 1260, 1565
Hpy99I CGWCG 1 cut(s) 925
HpyAV CCTTC 5 cut(s) 709, 956, 1400, 1490, 1592
HpyCH4IV ACGT 2 cut(s) 608, 723
HpyCH4V TGCA 2 cut(s) 71, 416
HpyF10VI GCNNNNNNNGC 7 cut(s) 56, 188, 575, 931, 1013, 1616, 1625
HpyF3I CTNAG 5 cut(s) 22, 573, 660, 926, 1551
HpySE526I ACGT 2 cut(s) 608, 723
Hsp92II CATG 5 cut(s) 292, 304, 429, 1003, 1189
HspAI GCGC 1 cut(s) 1130
Kzo9I GATC 2 cut(s) 85, 404
LmnI GCTCC 5 cut(s) 196, 537, 1202, 1482, 1607
Lsp1109I GCAGC 1 cut(s) 1028
LweI GCATC 2 cut(s) 1009, 1448
MabI ACCWGGT 1 cut(s) 939
MaeI CTAG 9 cut(s) 321, 399, 483, 701, 741, 959, 1250, 1557, 1593
MaeII ACGT 2 cut(s) 608, 723
MaeIII GTNAC 4 cut(s) 853, 1059, 1194, 1577
MalI GATC 2 cut(s) 87, 406
MboI GATC 2 cut(s) 85, 404
MfeI CAATTG 1 cut(s) 1433
MflI RGATCY 1 cut(s) 85
MhlI GDGCHC 5 cut(s) 433, 542, 885, 1105, 1612
MlsI TGGCCA 4 cut(s) 507, 686, 786, 1184
MluCI AATT 3 cut(s) 819, 1145, 1433
MluNI TGGCCA 4 cut(s) 507, 686, 786, 1184
MlyI GAGTC 1 cut(s) 1406
MmeI TCCRAC 3 cut(s) 267, 1054, 1404
Mox20I TGGCCA 4 cut(s) 507, 686, 786, 1184
MscI TGGCCA 4 cut(s) 507, 686, 786, 1184
MseI TTAA 3 cut(s) 378, 1139, 1614
MslI CAYNNNNRTG 1 cut(s) 121
Msp20I TGGCCA 4 cut(s) 507, 686, 786, 1184
MspI CCGG 3 cut(s) 188, 194, 635
MspR9I CCNGG 1 cut(s) 941
MunI CAATTG 1 cut(s) 1433
Mva1269I GAATGC 1 cut(s) 1043
MvaI CCWGG 1 cut(s) 941
MwoI GCNNNNNNNGC 7 cut(s) 56, 188, 575, 931, 1013, 1616, 1625
NcoI CCATGG 2 cut(s) 425, 1185
NdeII GATC 2 cut(s) 85, 404
NlaIII CATG 5 cut(s) 292, 304, 429, 1003, 1189
NlaIV GGNNCC 6 cut(s) 100, 192, 198, 592, 1204, 1356
NmeAIII GCCGAG 1 cut(s) 1025
NmuCI GTSAC 2 cut(s) 853, 1577
OliI CACNNNNGTG 1 cut(s) 121
PagI TCATGA 1 cut(s) 999
PctI GAATGC 1 cut(s) 1043
PfeI GAWTC 3 cut(s) 203, 512, 755
PkrI GCNGC 4 cut(s) 374, 568, 580, 1043
Ple19I CGATCG 1 cut(s) 407
PleI GAGTC 1 cut(s) 1405
PpsI GAGTC 1 cut(s) 1405
Psp124BI GAGCTC 1 cut(s) 1612
Psp6I CCWGG 1 cut(s) 939
PspGI CCWGG 1 cut(s) 939
PspN4I GGNNCC 6 cut(s) 100, 192, 198, 592, 1204, 1356
PsuI RGATCY 1 cut(s) 85
PvuI CGATCG 1 cut(s) 407
RsaI GTAC 3 cut(s) 284, 726, 1600
RsaNI GTAC 3 cut(s) 283, 725, 1599
RseI CAYNNNNRTG 1 cut(s) 121
SacI GAGCTC 1 cut(s) 1612
SaqAI TTAA 3 cut(s) 378, 1139, 1614
SatI GCNGC 4 cut(s) 373, 567, 579, 1042
Sau3AI GATC 2 cut(s) 85, 404
SchI GAGTC 1 cut(s) 1406
ScrFI CCNGG 1 cut(s) 941
SduI GDGCHC 5 cut(s) 433, 542, 885, 1105, 1612
SexAI ACCWGGT 1 cut(s) 939
SfaNI GCATC 2 cut(s) 1009, 1448
SmiMI CAYNNNNRTG 1 cut(s) 121
SmlI CTYRAG 2 cut(s) 119, 1571
SmoI CTYRAG 2 cut(s) 119, 1571
SpeI ACTAGT 1 cut(s) 1592
Sse9I AATT 3 cut(s) 819, 1145, 1433
SsiI CCGC 4 cut(s) 373, 566, 578, 1068
SspMI CTAG 9 cut(s) 321, 399, 483, 701, 741, 959, 1250, 1557, 1593
SstI GAGCTC 1 cut(s) 1612
StyD4I CCNGG 1 cut(s) 939
StyI CCWWGG 7 cut(s) 425, 1185, 1224, 1350, 1510, 1556, 1602
TaiI ACGT 2 cut(s) 611, 726
TasI AATT 3 cut(s) 819, 1145, 1433
TatI WGTACW 1 cut(s) 282
TauI GCSGC 3 cut(s) 375, 569, 581
TfiI GAWTC 3 cut(s) 203, 512, 755
Tru1I TTAA 3 cut(s) 378, 1139, 1614
Tru9I TTAA 3 cut(s) 378, 1139, 1614
TscAI CASTG 2 cut(s) 577, 1502
TseFI GTSAC 2 cut(s) 853, 1577
TseI GCWGC 1 cut(s) 1041
Tsp45I GTSAC 2 cut(s) 853, 1577
TspDTI ATGAA 8 cut(s) 213, 317, 816, 875, 969, 988, 1278, 1355
TspGWI ACGGA 1 cut(s) 748
TspRI CASTG 2 cut(s) 577, 1502
XapI RAATTY 1 cut(s) 1145
XmaJI CCTAGG 1 cut(s) 1556
XmiI GTMKAC 1 cut(s) 1564
XspI CTAG 9 cut(s) 321, 399, 483, 701, 741, 959, 1250, 1557, 1593
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.