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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 217 |
| Acc16I | TGCGCA | 1 cut(s) | 474 |
| AciI | CCGC | 4 cut(s) | 3, 210, 300, 402 |
| AcoI | YGGCCR | 3 cut(s) | 105, 133, 564 |
| AcsI | RAATTY | 1 cut(s) | 138 |
| AcyI | GRCGYC | 1 cut(s) | 214 |
| AfaI | GTAC | 3 cut(s) | 245, 422, 467 |
| AgsI | TTSAA | 1 cut(s) | 531 |
| AluBI | AGCT | 2 cut(s) | 198, 408 |
| AluI | AGCT | 2 cut(s) | 198, 408 |
| Ama87I | CYCGRG | 1 cut(s) | 54 |
| AoxI | GGCC | 5 cut(s) | 57, 105, 133, 437, 564 |
| ApeKI | GCWGC | 3 cut(s) | 6, 87, 321 |
| ApoI | RAATTY | 1 cut(s) | 138 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 56, 88 |
| AspLEI | GCGC | 1 cut(s) | 475 |
| AspS9I | GGNCC | 3 cut(s) | 57, 438, 513 |
| AvaI | CYCGRG | 1 cut(s) | 54 |
| AvaII | GGWCC | 1 cut(s) | 513 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 227, 260 |
| BbvI | GCAGC | 2 cut(s) | 74, 308 |
| BccI | CCATC | 2 cut(s) | 152, 575 |
| BclI | TGATCA | 1 cut(s) | 178 |
| BfaI | CTAG | 2 cut(s) | 160, 429 |
| BfmI | CTRYAG | 1 cut(s) | 239 |
| BisI | GCNGC | 4 cut(s) | 4, 7, 88, 322 |
| BlsI | GCNGC | 4 cut(s) | 5, 8, 89, 323 |
| Bme18I | GGWCC | 1 cut(s) | 513 |
| BmeT110I | CYCGRG | 1 cut(s) | 54 |
| BmgT120I | GGNCC | 3 cut(s) | 57, 438, 513 |
| BmsI | GCATC | 2 cut(s) | 138, 197 |
| BpuEI | CTTGAG | 1 cut(s) | 157 |
| BsaHI | GRCGYC | 1 cut(s) | 214 |
| BsaJI | CCNNGG | 2 cut(s) | 53, 434 |
| BseDI | CCNNGG | 2 cut(s) | 53, 434 |
| BseGI | GGATG | 1 cut(s) | 529 |
| BseRI | GAGGAG | 2 cut(s) | 321, 415 |
| BseX3I | CGGCCG | 2 cut(s) | 105, 133 |
| BseXI | GCAGC | 2 cut(s) | 74, 308 |
| Bsh1285I | CGRYCG | 2 cut(s) | 108, 136 |
| BshFI | GGCC | 5 cut(s) | 59, 107, 135, 439, 566 |
| BsiEI | CGRYCG | 2 cut(s) | 108, 136 |
| BsiHKCI | CYCGRG | 1 cut(s) | 54 |
| BsiSI | CCGG | 1 cut(s) | 104 |
| BsnI | GGCC | 5 cut(s) | 59, 107, 135, 439, 566 |
| BsoBI | CYCGRG | 1 cut(s) | 54 |
| Bsp143I | GATC | 1 cut(s) | 178 |
| BspACI | CCGC | 4 cut(s) | 3, 210, 300, 402 |
| BspANI | GGCC | 5 cut(s) | 59, 107, 135, 439, 566 |
| BssECI | CCNNGG | 2 cut(s) | 53, 434 |
| BssMI | GATC | 1 cut(s) | 178 |
| BssNI | GRCGYC | 1 cut(s) | 214 |
| BssT1I | CCWWGG | 1 cut(s) | 434 |
| Bst4CI | ACNGT | 1 cut(s) | 243 |
| BstACI | GRCGYC | 1 cut(s) | 214 |
| BstDEI | CTNAG | 2 cut(s) | 289, 411 |
| BstF5I | GGATG | 1 cut(s) | 529 |
| BstHHI | GCGC | 1 cut(s) | 475 |
| BstKTI | GATC | 1 cut(s) | 181 |
| BstMBI | GATC | 1 cut(s) | 178 |
| BstMCI | CGRYCG | 2 cut(s) | 108, 136 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 56, 261, 399 |
| BstNSI | RCATGY | 1 cut(s) | 264 |
| BstSFI | CTRYAG | 1 cut(s) | 239 |
| BstV1I | GCAGC | 2 cut(s) | 74, 308 |
| BstZI | CGGCCG | 2 cut(s) | 105, 133 |
| BsuRI | GGCC | 5 cut(s) | 59, 107, 135, 439, 566 |
| BtsCI | GGATG | 1 cut(s) | 529 |
| BtsI | GCAGTG | 1 cut(s) | 271 |
| BtsIMutI | CAGTG | 1 cut(s) | 271 |
| CfoI | GCGC | 1 cut(s) | 475 |
| Cfr13I | GGNCC | 3 cut(s) | 57, 438, 513 |
| Csp6I | GTAC | 3 cut(s) | 244, 421, 466 |
| CviAII | CATG | 6 cut(s) | 41, 83, 156, 261, 494, 571 |
| CviQI | GTAC | 3 cut(s) | 244, 421, 466 |
| DdeI | CTNAG | 2 cut(s) | 289, 411 |
| DpnI | GATC | 1 cut(s) | 180 |
| DpnII | GATC | 1 cut(s) | 178 |
| EaeI | YGGCCR | 3 cut(s) | 105, 133, 564 |
| EagI | CGGCCG | 2 cut(s) | 105, 133 |
| EclXI | CGGCCG | 2 cut(s) | 105, 133 |
| Eco130I | CCWWGG | 1 cut(s) | 434 |
| Eco47I | GGWCC | 1 cut(s) | 513 |
| Eco52I | CGGCCG | 2 cut(s) | 105, 133 |
| Eco88I | CYCGRG | 1 cut(s) | 54 |
| EcoRI | GAATTC | 1 cut(s) | 138 |
| EcoT14I | CCWWGG | 1 cut(s) | 434 |
| ErhI | CCWWGG | 1 cut(s) | 434 |
| FaeI | CATG | 6 cut(s) | 44, 86, 159, 264, 497, 574 |
| FatI | CATG | 6 cut(s) | 40, 82, 155, 260, 493, 570 |
| FbaI | TGATCA | 1 cut(s) | 178 |
| Fnu4HI | GCNGC | 4 cut(s) | 4, 7, 88, 322 |
| FokI | GGATG | 1 cut(s) | 536 |
| Fsp4HI | GCNGC | 4 cut(s) | 4, 7, 88, 322 |
| FspBI | CTAG | 2 cut(s) | 160, 429 |
| FspI | TGCGCA | 1 cut(s) | 474 |
| GlaI | GCGC | 1 cut(s) | 474 |
| GluI | GCNGC | 4 cut(s) | 4, 7, 88, 322 |
| HaeIII | GGCC | 5 cut(s) | 59, 107, 135, 439, 566 |
| HapII | CCGG | 1 cut(s) | 104 |
| HhaI | GCGC | 1 cut(s) | 475 |
| Hin1I | GRCGYC | 1 cut(s) | 214 |
| Hin1II | CATG | 6 cut(s) | 44, 86, 159, 264, 497, 574 |
| Hin6I | GCGC | 1 cut(s) | 473 |
| HinP1I | GCGC | 1 cut(s) | 473 |
| HinfI | GANTC | 2 cut(s) | 65, 585 |
| HpaII | CCGG | 1 cut(s) | 104 |
| Hpy166II | GTNNAC | 1 cut(s) | 558 |
| Hpy188I | TCNGA | 3 cut(s) | 219, 284, 510 |
| Hpy188III | TCNNGA | 1 cut(s) | 555 |
| Hpy8I | GTNNAC | 1 cut(s) | 558 |
| HpyCH4III | ACNGT | 1 cut(s) | 243 |
| HpyCH4IV | ACGT | 1 cut(s) | 214 |
| HpyCH4V | TGCA | 7 cut(s) | 50, 90, 129, 264, 346, 364, 542 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 56, 261, 399 |
| HpyF3I | CTNAG | 2 cut(s) | 289, 411 |
| HpySE526I | ACGT | 1 cut(s) | 214 |
| Hsp92I | GRCGYC | 1 cut(s) | 214 |
| Hsp92II | CATG | 6 cut(s) | 44, 86, 159, 264, 497, 574 |
| HspAI | GCGC | 1 cut(s) | 473 |
| Ksp22I | TGATCA | 1 cut(s) | 178 |
| Kzo9I | GATC | 1 cut(s) | 178 |
| LpnPI | CCDG | 2 cut(s) | 117, 379 |
| Lsp1109I | GCAGC | 2 cut(s) | 74, 308 |
| LweI | GCATC | 2 cut(s) | 138, 197 |
| MaeI | CTAG | 2 cut(s) | 160, 429 |
| MaeII | ACGT | 1 cut(s) | 214 |
| MaeIII | GTNAC | 1 cut(s) | 489 |
| MalI | GATC | 1 cut(s) | 180 |
| MboI | GATC | 1 cut(s) | 178 |
| MboII | GAAGA | 1 cut(s) | 216 |
| MluCI | AATT | 3 cut(s) | 138, 228, 397 |
| MlyI | GAGTC | 1 cut(s) | 59 |
| MmeI | TCCRAC | 1 cut(s) | 93 |
| MnlI | CCTC | 6 cut(s) | 63, 181, 342, 436, 504, 586 |
| MseI | TTAA | 1 cut(s) | 235 |
| MspI | CCGG | 1 cut(s) | 104 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 56, 261, 399 |
| NdeII | GATC | 1 cut(s) | 178 |
| NlaIII | CATG | 6 cut(s) | 44, 86, 159, 264, 497, 574 |
| NsbI | TGCGCA | 1 cut(s) | 474 |
| NspI | RCATGY | 1 cut(s) | 264 |
| PfeI | GAWTC | 1 cut(s) | 585 |
| PkrI | GCNGC | 4 cut(s) | 5, 8, 89, 323 |
| PleI | GAGTC | 1 cut(s) | 59 |
| PpsI | GAGTC | 1 cut(s) | 59 |
| PspPI | GGNCC | 3 cut(s) | 57, 438, 513 |
| RsaI | GTAC | 3 cut(s) | 245, 422, 467 |
| RsaNI | GTAC | 3 cut(s) | 244, 421, 466 |
| SaqAI | TTAA | 1 cut(s) | 235 |
| SatI | GCNGC | 4 cut(s) | 4, 7, 88, 322 |
| Sau3AI | GATC | 1 cut(s) | 178 |
| Sau96I | GGNCC | 3 cut(s) | 57, 438, 513 |
| SchI | GAGTC | 1 cut(s) | 59 |
| SetI | ASST | 7 cut(s) | 55, 173, 200, 217, 249, 410, 471 |
| SfaNI | GCATC | 2 cut(s) | 138, 197 |
| SfcI | CTRYAG | 1 cut(s) | 239 |
| SinI | GGWCC | 1 cut(s) | 513 |
| SmlI | CTYRAG | 1 cut(s) | 172 |
| SmoI | CTYRAG | 1 cut(s) | 172 |
| Sse9I | AATT | 3 cut(s) | 138, 228, 397 |
| SsiI | CCGC | 4 cut(s) | 3, 210, 300, 402 |
| SspI | AATATT | 1 cut(s) | 94 |
| SspMI | CTAG | 2 cut(s) | 160, 429 |
| StyI | CCWWGG | 1 cut(s) | 434 |
| TaaI | ACNGT | 1 cut(s) | 243 |
| TaiI | ACGT | 1 cut(s) | 217 |
| TaqI | TCGA | 3 cut(s) | 369, 385, 588 |
| TasI | AATT | 3 cut(s) | 138, 228, 397 |
| TauI | GCSGC | 1 cut(s) | 6 |
| TfiI | GAWTC | 1 cut(s) | 585 |
| Tru1I | TTAA | 1 cut(s) | 235 |
| Tru9I | TTAA | 1 cut(s) | 235 |
| TscAI | CASTG | 1 cut(s) | 271 |
| TseI | GCWGC | 3 cut(s) | 6, 87, 321 |
| TspDTI | ATGAA | 6 cut(s) | 57, 144, 180, 286, 328, 510 |
| TspRI | CASTG | 1 cut(s) | 271 |
| VpaK11BI | GGWCC | 1 cut(s) | 513 |
| XapI | RAATTY | 1 cut(s) | 138 |
| XceI | RCATGY | 1 cut(s) | 264 |
| XspI | CTAG | 2 cut(s) | 160, 429 |
| ZraI | GACGTC | 1 cut(s) | 215 |