Rmu_sc0004727.1_g000010

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004727.1
OG0000063
Physical Location & Seq
Reverse (-)
42942 .. 45138
2197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004727.1_g000010.1.cds

Sequence Viewer

Length: 1860 bp
atggagcatttctttggccaaaagttgaaggagtatggaatatatgatagcataaagatgactgaacaagatattcacatggattgccctctccttgcagctagcttatgcttctggtcttctgccaccaacaccatcgacttgcctcttgatctaatgacccctaccttgttagacatggccgcaatctttgggtttcggccgaatggcgaggcggtttgtgctacagccagattccctacttccttccatactagtctaaaacctaaagcgatcaagaatgacaagaaggctaaagatcaagcagaagttaaggcaaagcaattactcaactatagcaccttctatgccacacctgcagtcaatgaaccggtgtccgaaattaggaaacaacctcccaaacaacatgagcacaccgccttcctcctctattggctttgtgagtttgtgttttatgctaagtcaaacaagtgcacttttgaatttgctggtattacggaggctcgtagtataggtaggcccctagctcttaggccatttgttctttccagcccctaccgtactttacgcaatgcagtgatcgataatatgaatttggacattggagggccattatggatgtttcaagtatggatacagacctattttcaagagcttcagccaaaatgtcctccatttgcccccacaatgacacttggccatcaaattattccccttagtgctcacacccattcagccgcagcgtgttttggtttcttcttctcaaagaaaagtatgtccaatgatgagtttgacatatattacagccgagatcacccttcttgtcttcagattgacatatcaaaattatgggagaaaaaattagacttggatgtgattttgaattggggaagtattctgatttctcgggacttgaactacggcctcaaaggtaccgtggatcggtatggtgtggaggtttatcttcccaatttcgttgcacatcagtttggtttttatacagggttgtccagcattattcttgatgttaaggaatcacttctcgtcatggagggatggattcaaacgaacttcacagtgttcggcccttgggccaccccaaaatttcaagcttggtggtcgacatttatcatgaaaaaacttggagaagacttggctatgacccaacgcgttgcattacaaggactttcagatttgcttggccccaaggaatgcaagttatttcgactttaccgacaaacattgaagaaacatggctccacattagggcacacccaagatgccaagaaagcgaagaagtcagccgatgtggtggaaagtttggtcacagatccaactgacattatggaccatacagcctgtgatcttggtttagacctacttcaattccgagatacttcagacaacaccgcgagccccatagaggaaaaacttgaaacaatcgaaaccaaaaatgcacttgagacggtcagacagtttttgagttgtgatacaagaacaatgaccgaggctagttttcttgatttcaaggaggcggttaaagtactaatctcagccaaccatttctctcaggcagaagcttatgaagttcatgctcgtttagtcgttgtaaattttagcctctctccttatctagaggaccaaaaggagtttgaagctggtgagaagttgagaatcgagtatcatgacattcgccagttcatagatcttaagcggctccacaagttaaaaactgctttggacgaggggagacaaaaagtggttgatctgaaaaatcaattgaccgaagctgaagaacaagtcaatgttacttgccaccatccgaaatattgctccccaacaagatcttaccaattatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

619

Amino Acids

70.65

Weight (kDa)

6.36

Isoelectric Point (pI)

37.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 364
Acc36I ACCTGC 1 cut(s) 364
Acc65I GGTACC 1 cut(s) 932
AccB1I GGYRCC 1 cut(s) 932
AccI GTMKAC 1 cut(s) 1121
AccII CGCG 2 cut(s) 1170, 1412
AciI CCGC 7 cut(s) 183, 215, 417, 738, 1410, 1535, 1714
AclWI GGATC 2 cut(s) 948, 1325
AcoI YGGCCR 4 cut(s) 16, 180, 200, 697
AcsI RAATTY 4 cut(s) 482, 592, 1103, 1612
AcuI CTGAAG 4 cut(s) 641, 812, 1383, 1812
AfaI GTAC 3 cut(s) 562, 934, 1545
AfiI CCNNNNNNNGG 4 cut(s) 384, 942, 1266, 1423
AflII CTTAAG 1 cut(s) 1709
AflIII ACRYGT 1 cut(s) 1168
AgeI ACCGGT 1 cut(s) 370
AhlI ACTAGT 1 cut(s) 254
AluBI AGCT 8 cut(s) 101, 105, 527, 655, 1112, 1580, 1658, 1790
AluI AGCT 8 cut(s) 101, 105, 527, 655, 1112, 1580, 1658, 1790
Alw21I GWGCWC 3 cut(s) 414, 476, 724
Alw26I GTCTC 2 cut(s) 1457, 1744
Alw44I GTGCAC 1 cut(s) 472
AlwI GGATC 2 cut(s) 948, 1325
Ama87I CYCGRG 1 cut(s) 906
ApaLI GTGCAC 1 cut(s) 472
ApeKI GCWGC 2 cut(s) 98, 740
ApoI RAATTY 4 cut(s) 482, 592, 1103, 1612
AsiGI ACCGGT 1 cut(s) 370
Asp700I GAANNNNTTC 1 cut(s) 1038
Asp718I GGTACC 1 cut(s) 932
AspS9I GGNCC 7 cut(s) 519, 608, 1085, 1092, 1202, 1348, 1639
AsuHPI GGTGA 2 cut(s) 806, 1673
AsuNHI GCTAGC 1 cut(s) 101
AvaI CYCGRG 1 cut(s) 906
AvaII GGWCC 2 cut(s) 1348, 1639
BaeGI GKGCMC 2 cut(s) 476, 1272
BalI TGGCCA 2 cut(s) 18, 699
BanI GGYRCC 1 cut(s) 932
BanII GRGCYC 1 cut(s) 1418
BbsI GAAGAC 3 cut(s) 111, 818, 1155
Bbv12I GWGCWC 3 cut(s) 414, 476, 724
BbvI GCAGC 2 cut(s) 110, 752
BccI CCATC 4 cut(s) 143, 708, 1050, 1827
BceAI ACGGC 1 cut(s) 937
BciVI GTATCC 1 cut(s) 627
BcoDI GTCTC 2 cut(s) 1457, 1744
BcuI ACTAGT 1 cut(s) 254
BfaI CTAG 5 cut(s) 102, 255, 524, 1512, 1634
BfmI CTRYAG 3 cut(s) 225, 334, 357
BfrI CTTAAG 1 cut(s) 1709
BfuAI ACCTGC 1 cut(s) 364
BfuI GTATCC 1 cut(s) 627
BglII AGATCT 2 cut(s) 1705, 1844
BisI GCNGC 5 cut(s) 99, 183, 738, 741, 1715
BlsI GCNGC 5 cut(s) 100, 184, 739, 742, 1716
BmcAI AGTACT 1 cut(s) 1545
Bme18I GGWCC 2 cut(s) 1348, 1639
BmeT110I CYCGRG 1 cut(s) 906
BmgT120I GGNCC 7 cut(s) 519, 608, 1085, 1092, 1202, 1348, 1639
BmiI GGNNCC 5 cut(s) 521, 934, 1204, 1258, 1718
BmsI GCATC 1 cut(s) 1270
BmtI GCTAGC 1 cut(s) 105
BpiI GAAGAC 3 cut(s) 111, 818, 1155
BpuEI CTTGAG 1 cut(s) 1481
Bsa29I ATCGAT 1 cut(s) 582
BsaJI CCNNGG 4 cut(s) 936, 1088, 1206, 1506
BsaWI WCCGGW 1 cut(s) 370
Bsc4I CCNNNNNNNGG 4 cut(s) 384, 942, 1266, 1423
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 1 cut(s) 1696
Bse3DI GCAATG 1 cut(s) 577
BseCI ATCGAT 1 cut(s) 582
BseDI CCNNGG 4 cut(s) 936, 1088, 1206, 1506
BseGI GGATG 4 cut(s) 624, 877, 1061, 1819
BseLI CCNNNNNNNGG 4 cut(s) 384, 942, 1266, 1423
BseMI GCAATG 1 cut(s) 577
BseMII CTCAG 2 cut(s) 1566, 1583
BseNI ACTGG 1 cut(s) 1696
BseRI GAGGAG 1 cut(s) 416
BseSI GKGCMC 2 cut(s) 476, 1272
BseX3I CGGCCG 1 cut(s) 200
BseXI GCAGC 2 cut(s) 110, 752
Bsh1236I CGCG 2 cut(s) 1170, 1412
Bsh1285I CGRYCG 1 cut(s) 203
BshNI GGYRCC 1 cut(s) 932
BshTI ACCGGT 1 cut(s) 370
BshVI ATCGAT 1 cut(s) 582
BsiEI CGRYCG 1 cut(s) 203
BsiHKAI GWGCWC 3 cut(s) 414, 476, 724
BsiHKCI CYCGRG 1 cut(s) 906
BsiSI CCGG 1 cut(s) 371
BslFI GGGAC 1 cut(s) 923
BslI CCNNNNNNNGG 4 cut(s) 384, 942, 1266, 1423
BsmAI GTCTC 2 cut(s) 1457, 1744
BsmBI CGTCTC 1 cut(s) 1457
BsmFI GGGAC 1 cut(s) 923
BsmI GAATGC 1 cut(s) 1217
BsoBI CYCGRG 1 cut(s) 906
Bsp1286I GDGCHC 5 cut(s) 414, 476, 724, 1272, 1418
BspACI CCGC 7 cut(s) 183, 215, 417, 738, 1410, 1535, 1714
BspCNI CTCAG 2 cut(s) 1565, 1582
BspDI ATCGAT 1 cut(s) 582
BspFNI CGCG 2 cut(s) 1170, 1412
BspHI TCATGA 2 cut(s) 1131, 1684
BspLI GGNNCC 5 cut(s) 521, 934, 1204, 1258, 1718
BspMAI CTGCAG 1 cut(s) 361
BspMI ACCTGC 1 cut(s) 364
BspOI GCTAGC 1 cut(s) 105
BspPI GGATC 2 cut(s) 948, 1325
BspT107I GGYRCC 1 cut(s) 932
BspTI CTTAAG 1 cut(s) 1709
BsrDI GCAATG 1 cut(s) 577
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 1 cut(s) 1696
BssAI RCCGGY 1 cut(s) 370
BssECI CCNNGG 4 cut(s) 936, 1088, 1206, 1506
BssT1I CCWWGG 2 cut(s) 1088, 1206
Bst4CI ACNGT 5 cut(s) 560, 937, 1078, 1468, 1476
BstAFI CTTAAG 1 cut(s) 1709
BstC8I GCNNGC 2 cut(s) 103, 1414
BstDEI CTNAG 5 cut(s) 459, 530, 716, 1552, 1569
BstDSI CCRYGG 1 cut(s) 936
BstF5I GGATG 4 cut(s) 624, 877, 1061, 1819
BstFNI CGCG 2 cut(s) 1170, 1412
BstMAI GTCTC 2 cut(s) 1457, 1744
BstMCI CGRYCG 1 cut(s) 203
BstMWI GCNNNNNNNGC 3 cut(s) 221, 356, 1289
BstSFI CTRYAG 3 cut(s) 225, 334, 357
BstSLI GKGCMC 2 cut(s) 476, 1272
BstUI CGCG 2 cut(s) 1170, 1412
BstV1I GCAGC 2 cut(s) 110, 752
BstV2I GAAGAC 3 cut(s) 111, 818, 1155
BstX2I RGATCY 3 cut(s) 1330, 1705, 1844
BstYI RGATCY 3 cut(s) 1330, 1705, 1844
BstZI CGGCCG 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 582
BsuI GTATCC 1 cut(s) 627
BsuTUI ATCGAT 1 cut(s) 582
BtgI CCRYGG 1 cut(s) 936
BtsCI GGATG 4 cut(s) 624, 877, 1061, 1819
BtsI GCAGTG 1 cut(s) 582
BtsIMutI CAGTG 2 cut(s) 582, 1083
BveI ACCTGC 1 cut(s) 364
Cac8I GCNNGC 2 cut(s) 103, 1414
CciI TCATGA 2 cut(s) 1131, 1684
Cfr10I RCCGGY 1 cut(s) 370
Cfr13I GGNCC 7 cut(s) 519, 608, 1085, 1092, 1202, 1348, 1639
ClaI ATCGAT 1 cut(s) 582
Csp6I GTAC 3 cut(s) 561, 933, 1544
CspAI ACCGGT 1 cut(s) 370
CspCI CAANNNNNGTGG 2 cut(s) 1097, 1132
CviAII CATG 8 cut(s) 79, 178, 407, 1048, 1132, 1253, 1592, 1685
CviQI GTAC 3 cut(s) 561, 933, 1544
DdeI CTNAG 5 cut(s) 459, 530, 716, 1552, 1569
EaeI YGGCCR 4 cut(s) 16, 180, 200, 697
EagI CGGCCG 1 cut(s) 200
EclXI CGGCCG 1 cut(s) 200
Eco130I CCWWGG 2 cut(s) 1088, 1206
Eco24I GRGCYC 1 cut(s) 1418
Eco47I GGWCC 2 cut(s) 1348, 1639
Eco52I CGGCCG 1 cut(s) 200
Eco57I CTGAAG 4 cut(s) 641, 812, 1383, 1812
Eco88I CYCGRG 1 cut(s) 906
EcoO109I RGGNCCY 1 cut(s) 519
EcoT14I CCWWGG 2 cut(s) 1088, 1206
EcoT38I GRGCYC 1 cut(s) 1418
ErhI CCWWGG 2 cut(s) 1088, 1206
Esp3I CGTCTC 1 cut(s) 1457
FaeI CATG 8 cut(s) 82, 181, 410, 1051, 1135, 1256, 1595, 1688
FaqI GGGAC 1 cut(s) 923
FatI CATG 8 cut(s) 78, 177, 406, 1047, 1131, 1252, 1591, 1684
FblI GTMKAC 1 cut(s) 1121
Fnu4HI GCNGC 5 cut(s) 99, 183, 738, 741, 1715
FokI GGATG 4 cut(s) 631, 884, 1068, 1806
FriOI GRGCYC 1 cut(s) 1418
Fsp4HI GCNGC 5 cut(s) 99, 183, 738, 741, 1715
FspBI CTAG 5 cut(s) 102, 255, 524, 1512, 1634
GluI GCNGC 5 cut(s) 99, 183, 738, 741, 1715
HapII CCGG 1 cut(s) 371
Hin1II CATG 8 cut(s) 82, 181, 410, 1051, 1135, 1256, 1595, 1688
HincII GTYRAC 1 cut(s) 1122
HindII GTYRAC 1 cut(s) 1122
HindIII AAGCTT 2 cut(s) 1110, 1578
HinfI GANTC 4 cut(s) 234, 1034, 1060, 1674
HpaII CCGG 1 cut(s) 371
HphI GGTGA 2 cut(s) 806, 1673
Hpy166II GTNNAC 2 cut(s) 474, 1122
Hpy188I TCNGA 9 cut(s) 379, 831, 900, 1192, 1391, 1402, 1472, 1770, 1824
Hpy188III TCNNGA 9 cut(s) 149, 277, 650, 908, 1022, 1132, 1520, 1634, 1685
Hpy8I GTNNAC 2 cut(s) 474, 1122
HpyAV CCTTC 6 cut(s) 22, 256, 283, 352, 430, 828
HpyCH4III ACNGT 5 cut(s) 560, 937, 1078, 1468, 1476
HpyCH4V TGCA 8 cut(s) 98, 359, 474, 575, 980, 1175, 1215, 1457
HpyF10VI GCNNNNNNNGC 3 cut(s) 221, 356, 1289
HpyF3I CTNAG 5 cut(s) 459, 530, 716, 1552, 1569
Hsp92II CATG 8 cut(s) 82, 181, 410, 1051, 1135, 1256, 1595, 1688
KpnI GGTACC 1 cut(s) 936
LmnI GCTCC 4 cut(s) 4, 1262, 1722, 1838
Lsp1109I GCAGC 2 cut(s) 110, 752
LweI GCATC 1 cut(s) 1270
MaeI CTAG 5 cut(s) 102, 255, 524, 1512, 1634
MaeIII GTNAC 2 cut(s) 1324, 1807
MboII GAAGA 9 cut(s) 111, 748, 751, 818, 956, 1160, 1258, 1306, 1805
MfeI CAATTG 1 cut(s) 1778
MflI RGATCY 3 cut(s) 1330, 1705, 1844
MhlI GDGCHC 5 cut(s) 414, 476, 724, 1272, 1418
MlsI TGGCCA 2 cut(s) 18, 699
MluI ACGCGT 1 cut(s) 1168
MluNI TGGCCA 2 cut(s) 18, 699
MmeI TCCRAC 1 cut(s) 1358
Mox20I TGGCCA 2 cut(s) 18, 699
MroXI GAANNNNTTC 1 cut(s) 1038
MscI TGGCCA 2 cut(s) 18, 699
MseI TTAA 5 cut(s) 312, 1029, 1539, 1710, 1727
MslI CAYNNNNRTG 1 cut(s) 56
Msp20I TGGCCA 2 cut(s) 18, 699
MspCI CTTAAG 1 cut(s) 1709
MspI CCGG 1 cut(s) 371
MunI CAATTG 1 cut(s) 1778
Mva1269I GAATGC 1 cut(s) 1217
MvnI CGCG 2 cut(s) 1170, 1412
MwoI GCNNNNNNNGC 3 cut(s) 221, 356, 1289
NheI GCTAGC 1 cut(s) 101
NlaIII CATG 8 cut(s) 82, 181, 410, 1051, 1135, 1256, 1595, 1688
NlaIV GGNNCC 5 cut(s) 521, 934, 1204, 1258, 1718
NmeAIII GCCGAG 1 cut(s) 833
NmuCI GTSAC 1 cut(s) 1324
PagI TCATGA 2 cut(s) 1131, 1684
PaqCI CACCTGC 1 cut(s) 364
PcsI WCGNNNNNNNCGW 1 cut(s) 1231
PctI GAATGC 1 cut(s) 1217
PdmI GAANNNNTTC 1 cut(s) 1038
PfeI GAWTC 4 cut(s) 234, 1034, 1060, 1674
PinAI ACCGGT 1 cut(s) 370
PkrI GCNGC 5 cut(s) 100, 184, 739, 742, 1716
PspN4I GGNNCC 5 cut(s) 521, 934, 1204, 1258, 1718
PspPI GGNCC 7 cut(s) 519, 608, 1085, 1092, 1202, 1348, 1639
PstI CTGCAG 1 cut(s) 361
PsuI RGATCY 3 cut(s) 1330, 1705, 1844
RsaI GTAC 3 cut(s) 562, 934, 1545
RsaNI GTAC 3 cut(s) 561, 933, 1544
RseI CAYNNNNRTG 1 cut(s) 56
SalI GTCGAC 1 cut(s) 1120
SaqAI TTAA 5 cut(s) 312, 1029, 1539, 1710, 1727
SatI GCNGC 5 cut(s) 99, 183, 738, 741, 1715
Sau96I GGNCC 7 cut(s) 519, 608, 1085, 1092, 1202, 1348, 1639
ScaI AGTACT 1 cut(s) 1545
SduI GDGCHC 5 cut(s) 414, 476, 724, 1272, 1418
SfaNI GCATC 1 cut(s) 1270
SfcI CTRYAG 3 cut(s) 225, 334, 357
SinI GGWCC 2 cut(s) 1348, 1639
SmiMI CAYNNNNRTG 1 cut(s) 56
SmlI CTYRAG 2 cut(s) 1460, 1709
SmoI CTYRAG 2 cut(s) 1460, 1709
SpeI ACTAGT 1 cut(s) 254
SsiI CCGC 7 cut(s) 183, 215, 417, 738, 1410, 1535, 1714
SspI AATATT 1 cut(s) 1829
SspMI CTAG 5 cut(s) 102, 255, 524, 1512, 1634
StyI CCWWGG 2 cut(s) 1088, 1206
TaaI ACNGT 5 cut(s) 560, 937, 1078, 1468, 1476
TaqI TCGA 6 cut(s) 138, 582, 1121, 1225, 1443, 1677
TaqII GACCGA 2 cut(s) 1520, 1799
TatI WGTACW 1 cut(s) 1543
TauI GCSGC 3 cut(s) 185, 740, 1717
TfiI GAWTC 4 cut(s) 234, 1034, 1060, 1674
Tru1I TTAA 5 cut(s) 312, 1029, 1539, 1710, 1727
Tru9I TTAA 5 cut(s) 312, 1029, 1539, 1710, 1727
TscAI CASTG 2 cut(s) 582, 1083
TseFI GTSAC 1 cut(s) 1324
TseI GCWGC 2 cut(s) 98, 740
Tsp45I GTSAC 1 cut(s) 1324
TspDTI ATGAA 6 cut(s) 381, 605, 1148, 1580, 1599, 1690
TspGWI ACGGA 1 cut(s) 512
TspRI CASTG 2 cut(s) 582, 1083
Vha464I CTTAAG 1 cut(s) 1709
VneI GTGCAC 1 cut(s) 472
VpaK11BI GGWCC 2 cut(s) 1348, 1639
XapI RAATTY 4 cut(s) 482, 592, 1103, 1612
XbaI TCTAGA 1 cut(s) 1633
XmiI GTMKAC 1 cut(s) 1121
XmnI GAANNNNTTC 1 cut(s) 1038
XspI CTAG 5 cut(s) 102, 255, 524, 1512, 1634
ZrmI AGTACT 1 cut(s) 1545
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.