Rmu_sc0008242.1_g000012

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008242.1
OG0000063
Physical Location & Seq
Reverse (-)
59956 .. 63021
3066 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008242.1_g000012.1.cds

Sequence Viewer

Length: 2727 bp
atggcggaagcactaagtcaagccactgaaaagaatgcctcggccttcatgaatagaataacacaacgagtcccgaatgaaggtggggttcgtcaacttggcccaagtttccagagtgatataccggctgatgtggaaaaaattttgagccagcatgaagtggatgattctagctatttcagtgaaggaaaagcatggggagcatggggaacaaaaccaggaaaatggcctggtgaaacggccaactggattccgtgggtagaacgagtcgagaagcgatttggggaaatatggaaacgacttgggatctatgacgccatcaagctgtccaccattactattccttgtgaccgctccttgctggctgccgctatgtgtttttggagttctcaaacaaactctctggagcttcagtttggtgcacttagtccgaccttgattgatatagcggccattataggcctgccgccacatgggcaagtggtggacattgtatttgcagaaggaaagtttgacattgatcttggtggtgagctaagagatcgaagtaaaggcagaccagccgttgccaattataatacatggattgaggtgtttaacagcggcttgggaaataagtcactttatagtattggcagtgcagaagagaaagaggaaaaccagcaggagacaatggaagtaactcatgtagagcatgctgcgtttcttgccttttggatatgtaagtacttagtgtgcacaacttctaaaaaagtgaatgtggagtactacaagttggctgaagcattagcaagtaaagaagtacaagagagcgatcagccattagctcttggtccatttgtgcttgcccacttatacagatgtcttcaccattgtgtgaccgaaggactgaacccaaattggtctgggccattgtggatttttcagttgtggctgcacacttactttcccactttcagacagccgggtttagcattggccgtagacaccactcttggagaacaattggctcctcttgatttacttcctcattcggcagaagagtgttttgaggtgttgttcaagtgtccagagttttctgcagaacagtttgccatttgttttagtaggaagtatccagcctatcttgcaatagatatcagccaacacgcctcagaaagtgagacgagatgggagactgcgtgttcagcttggaagagtgcaataggtatgagggatctcttctggggtgccttgtctggtaaaacactcaagtgtggagtggagttatattcaccatcctatttcagtcgtcagttgggatattatcaagctataccggctccggtgccagaatcgtcaaaccgatatagttcattgcgagccgttttctccaacaaggacgacattgagcagaataataaggcgtttgtgtacaacatgagctttcccatgaagacaagagtagcaactagcaagagttcctcccagttcagagagtggtgggcgaaacgagtaggtaggcgctttaaagatgggttggtgtcggctaggcgatcggcttttgcaggaaatccatgggcacaagaaaagccgaaagctgtaaggcgtggtaaaataacaagcaaagtttctagagcaatcccaactataagtggccaagaatctttgaagaagtgtgctaaagggagcacaaagagaaaggccatccatagtgcggccactgaggcgaccaaagagggtgccactttgtcttcaacgtctcaatctcctcaagcaaaacaactggcaacacaagatgagcaatcgtctgagagcgaagaacaattgtgcgtggtcaaacgaagttgcctagagacaatcaagaaggccaacgtccaaaatgccattcctagtgaaagagaggaatccatggaaataaccattgataaagatggccaaccaagtagtggcgaacctgtaggggagataatttctcttgaaagaatggctgaaagcgaagttgtgacaaggagtatggaagaaacacttgtgctcacccaaacttcaacgcaagccagtattccctcctcgtcgtttagtgagcaacacctggtgctggctaatgaacaagaatgtaatcaagggtttgaagccgaacttcaggctttcatgagggcattttcggccgatgctctaatccaaccagaatgctgctcggccattttgcagttaccggccactcaattgacatcaagggaggaaattgatggggctttgaaggtggtaaaggaagcgttaacgcagccattaaaagaatttgtggaaacaggtcaactatcaaaagtgaaagtggccatggatttgttacttggagccaaatactttgcccctcccaaggtagctcttattggtgagaagttagaagtgttgacccaacaaatatcccgtgcagctggttcttaccaagaaatagaaaaaaggagacaacaaatcttggcttgtgagcaaatgaaacgggttgtggagtctcttgaaggcaagataaatgagttggaaagacaattggcgtccttgaaacaagagagacaagaagtgggggaaaagctccttcagaggagtaagcagtgtttccaaagtcaaggacaactgaagaagatagaggccgatttgaaagcttccgagcctaggtgtatgcaacttgagagtgaccttcaggccactagttgtaccttgggagctcttaatgatttattagccgaggaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

908

Amino Acids

101.0

Weight (kDa)

5.77

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 576
AccB1I GGYRCC 3 cut(s) 1229, 1327, 1721
AccB7I CCANNNNNTGG 1 cut(s) 1928
AccBSI CCGCTC 1 cut(s) 354
AccI GTMKAC 1 cut(s) 984
AciI CCGC 7 cut(s) 5, 352, 369, 449, 467, 603, 1697
AclWI GGATC 2 cut(s) 314, 1224
AcsI RAATTY 2 cut(s) 141, 2276
AcuI CTGAAG 6 cut(s) 395, 801, 2105, 2555, 2630, 2657
AcyI GRCGYC 2 cut(s) 315, 2528
AdeI CACNNNGTG 1 cut(s) 2074
AfaI GTAC 5 cut(s) 728, 767, 804, 1415, 2689
AfiI CCNNNNNNNGG 7 cut(s) 80, 473, 1696, 1928, 2077, 2356, 2646
AhlI ACTAGT 1 cut(s) 2681
AjnI CCWGG 3 cut(s) 217, 229, 2070
AjuI GAANNNNNNNTTGG 2 cut(s) 1851, 1883
AleI CACNNNNGTG 2 cut(s) 873, 1252
Alw21I GWGCWC 5 cut(s) 424, 740, 1673, 2016, 2701
Alw26I GTCTC 8 cut(s) 662, 1157, 1169, 1746, 1829, 2437, 2493, 2539
Alw44I GTGCAC 2 cut(s) 420, 736
AlwI GGATC 2 cut(s) 314, 1224
ApaLI GTGCAC 2 cut(s) 420, 736
ApeKI GCWGC 6 cut(s) 365, 698, 934, 2172, 2263, 2411
ApoI RAATTY 2 cut(s) 141, 2276
ArsI GACNNNNNNTTYG 2 cut(s) 479, 511
AspA2I CCTAGG 1 cut(s) 2645
AspLEI GCGC 1 cut(s) 1506
AspS9I GGNCC 3 cut(s) 101, 833, 908
AsuC2I CCSGG 1 cut(s) 966
AsuHPI GGTGA 6 cut(s) 245, 542, 860, 1266, 2008, 2384
AvaII GGWCC 1 cut(s) 833
AvrII CCTAGG 1 cut(s) 2645
BaeGI GKGCMC 3 cut(s) 424, 740, 1564
BalI TGGCCA 3 cut(s) 1638, 1917, 2315
BanI GGYRCC 3 cut(s) 1229, 1327, 1721
BanII GRGCYC 1 cut(s) 2701
BbsI GAAGAC 3 cut(s) 857, 1442, 1725
Bbv12I GWGCWC 5 cut(s) 424, 740, 1673, 2016, 2701
BbvI GCAGC 6 cut(s) 352, 685, 921, 2159, 2275, 2423
BccI CCATC 7 cut(s) 326, 1164, 1285, 1508, 1694, 1907, 2222
BceAI ACGGC 4 cut(s) 255, 548, 965, 1349
BciT130I CCWGG 3 cut(s) 219, 231, 2072
BciVI GTATCC 1 cut(s) 1125
BcnI CCSGG 1 cut(s) 966
BcoDI GTCTC 8 cut(s) 662, 1157, 1169, 1746, 1829, 2437, 2493, 2539
BcuI ACTAGT 1 cut(s) 2681
BfaI CTAG 8 cut(s) 171, 1452, 1530, 1614, 1832, 1872, 2646, 2682
BfmI CTRYAG 2 cut(s) 1080, 1938
BfoI RGCGCY 1 cut(s) 1507
BfuI GTATCC 1 cut(s) 1125
BglI GCCNNNNNGGC 2 cut(s) 475, 1706
BlnI CCTAGG 1 cut(s) 2645
BmcAI AGTACT 2 cut(s) 728, 767
Bme1390I CCNGG 4 cut(s) 219, 231, 966, 2072
Bme18I GGWCC 1 cut(s) 833
BmgT120I GGNCC 3 cut(s) 101, 833, 908
BmiI GGNNCC 6 cut(s) 1011, 1231, 1323, 1329, 1723, 2335
BmrFI CCNGG 4 cut(s) 219, 231, 966, 2072
BmrI ACTGGG 1 cut(s) 1462
BmsI GCATC 1 cut(s) 2140
BmuI ACTGGG 1 cut(s) 1462
BpiI GAAGAC 3 cut(s) 857, 1442, 1725
BpmI CTGGAG 1 cut(s) 425
BpuEI CTTGAG 3 cut(s) 1235, 1737, 2681
BpuMI CCSGG 1 cut(s) 966
BsaHI GRCGYC 2 cut(s) 315, 2528
BsaJI CCNNGG 9 cut(s) 39, 254, 1556, 1890, 2316, 2355, 2645, 2691, 2718
BsaWI WCCGGW 1 cut(s) 1324
BsaXI ACNNNNNCTCC 4 cut(s) 398, 428, 1166, 1196
Bsc4I CCNNNNNNNGG 7 cut(s) 80, 473, 1696, 1928, 2077, 2356, 2646
Bse118I RCCGGY 3 cut(s) 124, 1318, 2194
Bse1I ACTGG 4 cut(s) 251, 1468, 1770, 2037
Bse3DI GCAATG 1 cut(s) 1355
BseBI CCWGG 3 cut(s) 219, 231, 2072
BseDI CCNNGG 9 cut(s) 39, 254, 1556, 1890, 2316, 2355, 2645, 2691, 2718
BseGI GGATG 3 cut(s) 169, 1277, 1686
BseLI CCNNNNNNNGG 7 cut(s) 80, 473, 1696, 1928, 2077, 2356, 2646
BseMI GCAATG 1 cut(s) 1355
BseMII CTCAG 3 cut(s) 1167, 1695, 1782
BseNI ACTGG 4 cut(s) 251, 1468, 1770, 2037
BseRI GAGGAG 4 cut(s) 1002, 1740, 2038, 2590
BseSI GKGCMC 3 cut(s) 424, 740, 1564
BseX3I CGGCCG 1 cut(s) 2145
BseXI GCAGC 6 cut(s) 352, 685, 921, 2159, 2275, 2423
BsgI GTGCAG 3 cut(s) 660, 920, 2430
Bsh1285I CGRYCG 2 cut(s) 1538, 2148
BshNI GGYRCC 3 cut(s) 1229, 1327, 1721
BsiEI CGRYCG 2 cut(s) 1538, 2148
BsiHKAI GWGCWC 5 cut(s) 424, 740, 1673, 2016, 2701
BsiSI CCGG 5 cut(s) 125, 965, 1319, 1325, 2195
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 7 cut(s) 80, 473, 1696, 1928, 2077, 2356, 2646
BsmAI GTCTC 8 cut(s) 662, 1157, 1169, 1746, 1829, 2437, 2493, 2539
BsmBI CGTCTC 2 cut(s) 1157, 1746
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 2 cut(s) 40, 2174
Bsp1286I GDGCHC 6 cut(s) 424, 740, 1564, 1673, 2016, 2701
Bsp1407I TGTACA 1 cut(s) 1413
Bsp143I GATC 6 cut(s) 306, 520, 541, 814, 1216, 1535
Bsp19I CCATGG 3 cut(s) 1556, 1890, 2316
BspACI CCGC 7 cut(s) 5, 352, 369, 449, 467, 603, 1697
BspCNI CTCAG 3 cut(s) 1166, 1696, 1783
BspHI TCATGA 2 cut(s) 48, 2130
BspLI GGNNCC 6 cut(s) 1011, 1231, 1323, 1329, 1723, 2335
BspMAI CTGCAG 1 cut(s) 1084
BspPI GGATC 2 cut(s) 314, 1224
BspT107I GGYRCC 3 cut(s) 1229, 1327, 1721
BsrBI CCGCTC 1 cut(s) 354
BsrDI GCAATG 1 cut(s) 1355
BsrFI RCCGGY 3 cut(s) 124, 1318, 2194
BsrGI TGTACA 1 cut(s) 1413
BsrI ACTGG 4 cut(s) 251, 1468, 1770, 2037
BssAI RCCGGY 3 cut(s) 124, 1318, 2194
BssECI CCNNGG 9 cut(s) 39, 254, 1556, 1890, 2316, 2355, 2645, 2691, 2718
BssMI GATC 6 cut(s) 306, 520, 541, 814, 1216, 1535
BssNI GRCGYC 2 cut(s) 315, 2528
BssT1I CCWWGG 6 cut(s) 1556, 1890, 2316, 2355, 2645, 2691
Bst2UI CCWGG 3 cut(s) 219, 231, 2072
Bst4CI ACNGT 1 cut(s) 1089
Bst6I CTCTTC 4 cut(s) 639, 1035, 1190, 1226
BstACI GRCGYC 2 cut(s) 315, 2528
BstAUI TGTACA 1 cut(s) 1413
BstC8I GCNNGC 8 cut(s) 152, 363, 464, 696, 846, 1362, 2034, 2079
BstDEI CTNAG 7 cut(s) 14, 425, 536, 730, 1153, 1704, 1791
BstDSI CCRYGG 4 cut(s) 254, 1556, 1890, 2316
BstF5I GGATG 3 cut(s) 169, 1277, 1686
BstH2I RGCGCY 1 cut(s) 1507
BstHHI GCGC 1 cut(s) 1506
BstKTI GATC 6 cut(s) 309, 523, 544, 817, 1219, 1538
BstMAI GTCTC 8 cut(s) 662, 1157, 1169, 1746, 1829, 2437, 2493, 2539
BstMBI GATC 6 cut(s) 306, 520, 541, 814, 1216, 1535
BstMCI CGRYCG 2 cut(s) 1538, 2148
BstMWI GCNNNNNNNGC 8 cut(s) 200, 475, 707, 1127, 1187, 1319, 1706, 2144
BstNI CCWGG 3 cut(s) 219, 231, 2072
BstNSI RCATGY 1 cut(s) 698
BstSCI CCNGG 4 cut(s) 217, 229, 964, 2070
BstSFI CTRYAG 2 cut(s) 1080, 1938
BstSLI GKGCMC 3 cut(s) 424, 740, 1564
BstV1I GCAGC 6 cut(s) 352, 685, 921, 2159, 2275, 2423
BstV2I GAAGAC 3 cut(s) 857, 1442, 1725
BstX2I RGATCY 2 cut(s) 306, 1216
BstXI CCANNNNNNTGG 1 cut(s) 225
BstYI RGATCY 2 cut(s) 306, 1216
BstZI CGGCCG 1 cut(s) 2145
BsuI GTATCC 1 cut(s) 1125
BtgI CCRYGG 4 cut(s) 254, 1556, 1890, 2316
BtsCI GGATG 3 cut(s) 169, 1277, 1686
BtsI GCAGTG 2 cut(s) 643, 2591
BtsIMutI CAGTG 5 cut(s) 24, 187, 643, 1701, 2591
Cac8I GCNNGC 8 cut(s) 152, 363, 464, 696, 846, 1362, 2034, 2079
CciI TCATGA 2 cut(s) 48, 2130
CfoI GCGC 1 cut(s) 1506
Cfr10I RCCGGY 3 cut(s) 124, 1318, 2194
Cfr13I GGNCC 3 cut(s) 101, 833, 908
CseI GACGC 2 cut(s) 323, 2517
CsiI ACCWGGT 1 cut(s) 2070
Csp6I GTAC 5 cut(s) 727, 766, 803, 1414, 2688
CviQI GTAC 5 cut(s) 727, 766, 803, 1414, 2688
DdeI CTNAG 7 cut(s) 14, 425, 536, 730, 1153, 1704, 1791
DpnI GATC 6 cut(s) 308, 522, 543, 816, 1218, 1537
DpnII GATC 6 cut(s) 306, 520, 541, 814, 1216, 1535
DraI TTTAAA 1 cut(s) 1510
DraIII CACNNNGTG 1 cut(s) 2074
EagI CGGCCG 1 cut(s) 2145
Eam1104I CTCTTC 4 cut(s) 639, 1035, 1190, 1226
EarI CTCTTC 4 cut(s) 639, 1035, 1190, 1226
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 2699
EclXI CGGCCG 1 cut(s) 2145
Eco130I CCWWGG 6 cut(s) 1556, 1890, 2316, 2355, 2645, 2691
Eco147I AGGCCT 1 cut(s) 462
Eco24I GRGCYC 1 cut(s) 2701
Eco32I GATATC 1 cut(s) 1138
Eco47I GGWCC 1 cut(s) 833
Eco52I CGGCCG 1 cut(s) 2145
Eco53kI GAGCTC 1 cut(s) 2699
Eco57I CTGAAG 6 cut(s) 395, 801, 2105, 2555, 2630, 2657
EcoICRI GAGCTC 1 cut(s) 2699
EcoRII CCWGG 3 cut(s) 217, 229, 2070
EcoRV GATATC 1 cut(s) 1138
EcoT14I CCWWGG 6 cut(s) 1556, 1890, 2316, 2355, 2645, 2691
EcoT38I GRGCYC 1 cut(s) 2701
ErhI CCWWGG 6 cut(s) 1556, 1890, 2316, 2355, 2645, 2691
Esp3I CGTCTC 2 cut(s) 1157, 1746
FalI AAGNNNNNCTT 4 cut(s) 1992, 2024, 2103, 2135
FaqI GGGAC 1 cut(s) 56
FblI GTMKAC 1 cut(s) 984
FokI GGATG 3 cut(s) 176, 1264, 1673
FriOI GRGCYC 1 cut(s) 2701
FspBI CTAG 8 cut(s) 171, 1452, 1530, 1614, 1832, 1872, 2646, 2682
GlaI GCGC 1 cut(s) 1505
GsuI CTGGAG 1 cut(s) 425
HaeII RGCGCY 1 cut(s) 1507
HapII CCGG 5 cut(s) 125, 965, 1319, 1325, 2195
HgaI GACGC 2 cut(s) 323, 2517
HhaI GCGC 1 cut(s) 1506
Hin1I GRCGYC 2 cut(s) 315, 2528
Hin6I GCGC 1 cut(s) 1504
HinP1I GCGC 1 cut(s) 1504
HincII GTYRAC 4 cut(s) 95, 2259, 2294, 2391
HindII GTYRAC 4 cut(s) 95, 2259, 2294, 2391
HindIII AAGCTT 1 cut(s) 2634
HinfI GANTC 8 cut(s) 69, 167, 250, 267, 1334, 1643, 1886, 2486
HpaI GTTAAC 1 cut(s) 2259
HpaII CCGG 5 cut(s) 125, 965, 1319, 1325, 2195
HphI GGTGA 6 cut(s) 245, 542, 860, 1266, 2008, 2384
Hpy188I TCNGA 7 cut(s) 432, 959, 1156, 1475, 1792, 2574, 2641
Hpy99I CGWCG 1 cut(s) 2056
HpyCH4III ACNGT 1 cut(s) 1089
HpyCH4IV ACGT 2 cut(s) 1739, 1854
HpyF10VI GCNNNNNNNGC 8 cut(s) 200, 475, 707, 1127, 1187, 1319, 1706, 2144
HpyF3I CTNAG 7 cut(s) 14, 425, 536, 730, 1153, 1704, 1791
HpySE526I ACGT 2 cut(s) 1739, 1854
Hsp92I GRCGYC 2 cut(s) 315, 2528
HspAI GCGC 1 cut(s) 1504
KspAI GTTAAC 1 cut(s) 2259
Kzo9I GATC 6 cut(s) 306, 520, 541, 814, 1216, 1535
LmnI GCTCC 9 cut(s) 200, 359, 406, 1015, 1327, 1668, 2333, 2571, 2696
Lsp1109I GCAGC 6 cut(s) 352, 685, 921, 2159, 2275, 2423
LweI GCATC 1 cut(s) 2140
MabI ACCWGGT 1 cut(s) 2070
MaeI CTAG 8 cut(s) 171, 1452, 1530, 1614, 1832, 1872, 2646, 2682
MaeII ACGT 2 cut(s) 1739, 1854
MaeIII GTNAC 8 cut(s) 347, 618, 679, 877, 1984, 2190, 2325, 2666
MalI GATC 6 cut(s) 308, 522, 543, 816, 1218, 1537
MbiI CCGCTC 1 cut(s) 354
MboI GATC 6 cut(s) 306, 520, 541, 814, 1216, 1535
MfeI CAATTG 4 cut(s) 1004, 1805, 2204, 2522
MflI RGATCY 2 cut(s) 306, 1216
MhlI GDGCHC 6 cut(s) 424, 740, 1564, 1673, 2016, 2701
MlsI TGGCCA 3 cut(s) 1638, 1917, 2315
MluNI TGGCCA 3 cut(s) 1638, 1917, 2315
MlyI GAGTC 3 cut(s) 78, 276, 2495
MmeI TCCRAC 4 cut(s) 455, 1398, 2185, 2493
Mox20I TGGCCA 3 cut(s) 1638, 1917, 2315
MscI TGGCCA 3 cut(s) 1638, 1917, 2315
MseI TTAA 5 cut(s) 597, 1509, 2258, 2270, 2703
MslI CAYNNNNRTG 2 cut(s) 873, 1252
Msp20I TGGCCA 3 cut(s) 1638, 1917, 2315
MspA1I CMGCKG 2 cut(s) 603, 2414
MspI CCGG 5 cut(s) 125, 965, 1319, 1325, 2195
MspR9I CCNGG 4 cut(s) 219, 231, 966, 2072
MunI CAATTG 4 cut(s) 1004, 1805, 2204, 2522
Mva1269I GAATGC 2 cut(s) 40, 2174
MvaI CCWGG 3 cut(s) 219, 231, 2072
MwoI GCNNNNNNNGC 8 cut(s) 200, 475, 707, 1127, 1187, 1319, 1706, 2144
NciI CCSGG 1 cut(s) 966
NcoI CCATGG 3 cut(s) 1556, 1890, 2316
NdeII GATC 6 cut(s) 306, 520, 541, 814, 1216, 1535
NlaIV GGNNCC 6 cut(s) 1011, 1231, 1323, 1329, 1723, 2335
NmeAIII GCCGAG 2 cut(s) 20, 2156
NmuCI GTSAC 5 cut(s) 347, 618, 877, 1984, 2666
NspI RCATGY 1 cut(s) 698
OliI CACNNNNGTG 2 cut(s) 873, 1252
PaeI GCATGC 1 cut(s) 698
PagI TCATGA 2 cut(s) 48, 2130
PceI AGGCCT 1 cut(s) 462
PctI GAATGC 2 cut(s) 40, 2174
PfeI GAWTC 5 cut(s) 167, 250, 1334, 1643, 1886
PflMI CCANNNNNTGG 1 cut(s) 1928
Ple19I CGATCG 1 cut(s) 1538
PleI GAGTC 3 cut(s) 77, 275, 2494
PpsI GAGTC 3 cut(s) 77, 275, 2494
PsiI TTATAA 1 cut(s) 576
Psp124BI GAGCTC 1 cut(s) 2701
Psp6I CCWGG 3 cut(s) 217, 229, 2070
PspGI CCWGG 3 cut(s) 217, 229, 2070
PspN4I GGNNCC 6 cut(s) 1011, 1231, 1323, 1329, 1723, 2335
PspPI GGNCC 3 cut(s) 101, 833, 908
PstI CTGCAG 1 cut(s) 1084
PsuI RGATCY 2 cut(s) 306, 1216
PvuI CGATCG 1 cut(s) 1538
PvuII CAGCTG 1 cut(s) 2414
RsaI GTAC 5 cut(s) 728, 767, 804, 1415, 2689
RsaNI GTAC 5 cut(s) 727, 766, 803, 1414, 2688
RseI CAYNNNNRTG 2 cut(s) 873, 1252
SacI GAGCTC 1 cut(s) 2701
SaqAI TTAA 5 cut(s) 597, 1509, 2258, 2270, 2703
Sau3AI GATC 6 cut(s) 306, 520, 541, 814, 1216, 1535
Sau96I GGNCC 3 cut(s) 101, 833, 908
ScaI AGTACT 2 cut(s) 728, 767
SchI GAGTC 3 cut(s) 78, 276, 2495
ScrFI CCNGG 4 cut(s) 219, 231, 966, 2072
SduI GDGCHC 6 cut(s) 424, 740, 1564, 1673, 2016, 2701
SexAI ACCWGGT 1 cut(s) 2070
SfaNI GCATC 1 cut(s) 2140
SfcI CTRYAG 2 cut(s) 1080, 1938
SinI GGWCC 1 cut(s) 833
SmiMI CAYNNNNRTG 2 cut(s) 873, 1252
SmlI CTYRAG 3 cut(s) 1250, 1752, 2660
SmoI CTYRAG 3 cut(s) 1250, 1752, 2660
SpeI ACTAGT 1 cut(s) 2681
SphI GCATGC 1 cut(s) 698
SseBI AGGCCT 1 cut(s) 462
SsiI CCGC 7 cut(s) 5, 352, 369, 449, 467, 603, 1697
SspMI CTAG 8 cut(s) 171, 1452, 1530, 1614, 1832, 1872, 2646, 2682
SstI GAGCTC 1 cut(s) 2701
StuI AGGCCT 1 cut(s) 462
StyD4I CCNGG 4 cut(s) 217, 229, 964, 2070
StyI CCWWGG 6 cut(s) 1556, 1890, 2316, 2355, 2645, 2691
TaaI ACNGT 1 cut(s) 1089
TaiI ACGT 2 cut(s) 1742, 1857
TaqI TCGA 2 cut(s) 270, 544
TaqII GACCGA 1 cut(s) 896
TatI WGTACW 4 cut(s) 726, 765, 802, 1413
TauI GCSGC 5 cut(s) 371, 452, 469, 606, 1700
TfiI GAWTC 5 cut(s) 167, 250, 1334, 1643, 1886
Tru1I TTAA 5 cut(s) 597, 1509, 2258, 2270, 2703
Tru9I TTAA 5 cut(s) 597, 1509, 2258, 2270, 2703
TscAI CASTG 5 cut(s) 31, 187, 643, 1708, 2591
TseFI GTSAC 5 cut(s) 347, 618, 877, 1984, 2666
TseI GCWGC 6 cut(s) 365, 698, 934, 2172, 2263, 2411
Tsp45I GTSAC 5 cut(s) 347, 618, 877, 1984, 2666
TspDTI ATGAA 9 cut(s) 37, 65, 93, 171, 1344, 1448, 2100, 2119, 2486
TspGWI ACGGA 1 cut(s) 243
TspRI CASTG 5 cut(s) 31, 187, 643, 1708, 2591
Van91I CCANNNNNTGG 1 cut(s) 1928
VneI GTGCAC 2 cut(s) 420, 736
VpaK11BI GGWCC 1 cut(s) 833
XapI RAATTY 2 cut(s) 141, 2276
XbaI TCTAGA 1 cut(s) 1613
XceI RCATGY 1 cut(s) 698
XcmI CCANNNNNNNNNTGG 1 cut(s) 1925
XmaJI CCTAGG 1 cut(s) 2645
XmiI GTMKAC 1 cut(s) 984
XspI CTAG 8 cut(s) 171, 1452, 1530, 1614, 1832, 1872, 2646, 2682
ZrmI AGTACT 2 cut(s) 728, 767
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.