FvH4_1g29794

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000063
Physical Location & Seq
Reverse (-)
23305126 .. 23306770
1645 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g29794.t1

Sequence Viewer

Length: 1413 bp
ATGTCTGATGAGGAATGGAGAACATCTTGGGGCAGCTTTGTGATTTCACGAGACTTGCATCATGGGTTGACACTCAATACACACTCTAAGCCTGGAGTAGAAGTTTACCTTCCCAACTATTTTGCTCGTCAATTCGGATGCATCCAAAGCTGTCCCGTCCTTTACAACAACTCATTAAATCTTTTAACCCCATGGCGCCGAAAGGTGCACACAAAAGATATGTGTGACTCAGTTTCACGACGGTACCATGATCGCCTCAATCGTTTTAAGTTGGAAGGCTTCCAATCGAATTCCGCAGCCACTCCTACCTTCGTGTCTTGGTGGGCAGACTTTTCTATGAAATTTGTGGATCCAAAATATAAAGATATGTTTACAGAGCGGATCGTCCAAGGAGTTGGAGATATTCTTCTGAACCAAACTGGTCACAAGAGAAAACGGGCTTCTGTTGGTCATTGTAACGAGCTATCAACACCTAGGCAACGAAGCTCTGTTCGTATTGAAGAAATCTTTGACGAGAATTCTCCTGTAAGCTCGAACAATGGAAGCGGTCATGAGTCTGCTGCACATGACGACTGTGCCGACAGGTATGGCGAGAATTTAAACAGTGAGAGCGCAAATGAAGACGATGTAGACAGCACTTCGTCTCATAGTTTGCCTTGTTCATCTCCGAACCGTAACCATCAGGGACCGTACGAGCATGAGAACACCAGCCAAACCCAAAGTACTCACACAAAAACGACTGCCATTCAACCTAACCTATTGCCCGCAGACACCATGGCTTTCTTGGACGAACTTGCTGGGCAACTTGAAGTGCCACAAAATCATAATTTGAGGGAGGAGAGTGGAATAAGACGTGACCCGAGGGAACAGAGGGCGGCTGAGTTCGTTGCTGTGCATTGTCGTAAACCGCTTATGACCATCGCTGAGCAAGGTCTTTATGACCGTTTCAAACAAGAATTGACATTCTTGATCTCACTTAACCATTTCACTCTTGAACGCACTCGGCAGATCGAAAGTCATCTCAAGGTCATAGACGCGAGCATTGATGCCTTTTCACAAACATTGGAAAAATGGGACACCGGCCGCGTGCTAGAGCAAAAATATGGACTCATTGTCAAGCGGCAATCTTCACGCGCCGCGAAACTCACCCAAATGCGACATGAACTCAAGACCGATGCCGAGAAGTTGGCCGAGCTGGAAAGTCAAATGAAAACGATTCGAGAGCGCATGTCCACAACTTCACACGTCATAAACCAGGAATACGCGGCACACCATGAAGAACTCAAGTTATTTTCTCAATATGGTAGAGACACCAAAGCTTTTATAGACATCAAAGAAGATCTTGACAAGGCCATGAACCTGATTGGGCCATGTGGGAAAATATCTTGTCATGATGGGTTTTCTCAAGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

471

Amino Acids

53.75

Weight (kDa)

6.35

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 243
AccB1I GGYRCC 2 cut(s) 195, 243
AccBSI CCGCTC 1 cut(s) 379
AccI GTMKAC 1 cut(s) 630
AccII CGCG 5 cut(s) 1037, 1086, 1134, 1139, 1265
AclWI GGATC 3 cut(s) 344, 357, 389
AcoI YGGCCR 2 cut(s) 1081, 1188
AcsI RAATTY 4 cut(s) 289, 341, 517, 595
AcyI GRCGYC 1 cut(s) 196
AfaI GTAC 3 cut(s) 245, 692, 724
AflIII ACRYGT 1 cut(s) 1243
AgsI TTSAA 5 cut(s) 500, 749, 809, 949, 995
AhdI GACNNNNNGTC 1 cut(s) 1112
AjiI CACGTC 2 cut(s) 854, 1246
AjnI CCWGG 2 cut(s) 91, 1254
AluBI AGCT 7 cut(s) 36, 150, 463, 486, 531, 1195, 1319
AluI AGCT 7 cut(s) 36, 150, 463, 486, 531, 1195, 1319
Alw21I GWGCWC 1 cut(s) 210
Alw26I GTCTC 3 cut(s) 45, 648, 1302
Alw44I GTGCAC 1 cut(s) 206
AlwI GGATC 3 cut(s) 344, 357, 389
Ama87I CYCGRG 1 cut(s) 859
AoxI GGCC 4 cut(s) 1081, 1188, 1350, 1367
ApaLI GTGCAC 1 cut(s) 206
ApeKI GCWGC 3 cut(s) 33, 296, 560
ApoI RAATTY 4 cut(s) 289, 341, 517, 595
Asp718I GGTACC 1 cut(s) 243
AspA2I CCTAGG 1 cut(s) 473
AspLEI GCGC 4 cut(s) 198, 614, 1136, 1227
AspS9I GGNCC 2 cut(s) 686, 1367
AsuHPI GGTGA 1 cut(s) 1138
AvaI CYCGRG 1 cut(s) 859
AvaII GGWCC 1 cut(s) 686
AvrII CCTAGG 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 210
BaeI ACNNNNGTAYC 2 cut(s) 227, 260
BamHI GGATCC 1 cut(s) 349
BanI GGYRCC 2 cut(s) 195, 243
BauI CACGAG 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 627
Bbv12I GWGCWC 1 cut(s) 210
BbvI GCAGC 3 cut(s) 45, 308, 547
BccI CCATC 3 cut(s) 687, 926, 1388
BciT130I CCWGG 2 cut(s) 93, 1256
BcoDI GTCTC 3 cut(s) 45, 648, 1302
BfaI CTAG 2 cut(s) 474, 1091
BfoI RGCGCY 1 cut(s) 199
BglII AGATCT 1 cut(s) 1339
BisI GCNGC 8 cut(s) 34, 297, 561, 876, 1084, 1121, 1137, 1266
BlnI CCTAGG 1 cut(s) 473
BlpI GCTNAGC 1 cut(s) 924
BlsI GCNGC 8 cut(s) 35, 298, 562, 877, 1085, 1122, 1138, 1267
BmcAI AGTACT 1 cut(s) 724
Bme1390I CCNGG 2 cut(s) 93, 1256
Bme18I GGWCC 1 cut(s) 686
BmeRI GACNNNNNGTC 1 cut(s) 1112
BmeT110I CYCGRG 1 cut(s) 859
BmgBI CACGTC 2 cut(s) 854, 1246
BmgT120I GGNCC 2 cut(s) 686, 1367
BmiI GGNNCC 4 cut(s) 197, 245, 351, 687
BmrFI CCNGG 2 cut(s) 93, 1256
BmsI GCATC 5 cut(s) 67, 128, 150, 1036, 1165
BpiI GAAGAC 1 cut(s) 627
BpmI CTGGAG 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 924
BpuEI CTTGAG 4 cut(s) 1007, 1151, 1268, 1389
BsaHI GRCGYC 1 cut(s) 196
BsaJI CCNNGG 5 cut(s) 191, 388, 473, 774, 860
BsaXI ACNNNNNCTCC 2 cut(s) 87, 117
Bse118I RCCGGY 1 cut(s) 1079
Bse1I ACTGG 1 cut(s) 424
BseBI CCWGG 2 cut(s) 93, 1256
BseDI CCNNGG 5 cut(s) 191, 388, 473, 774, 860
BseGI GGATG 2 cut(s) 141, 143
BseMII CTCAG 3 cut(s) 243, 870, 915
BseNI ACTGG 1 cut(s) 424
BseRI GAGGAG 1 cut(s) 851
BseSI GKGCMC 1 cut(s) 210
BseX3I CGGCCG 1 cut(s) 1081
BseXI GCAGC 3 cut(s) 45, 308, 547
BseYI CCCAGC 1 cut(s) 797
BsgI GTGCAG 1 cut(s) 546
Bsh1236I CGCG 5 cut(s) 1037, 1086, 1134, 1139, 1265
Bsh1285I CGRYCG 1 cut(s) 1084
BshFI GGCC 4 cut(s) 1083, 1190, 1352, 1369
BshNI GGYRCC 2 cut(s) 195, 243
BsiEI CGRYCG 1 cut(s) 1084
BsiHKAI GWGCWC 1 cut(s) 210
BsiHKCI CYCGRG 1 cut(s) 859
BsiSI CCGG 1 cut(s) 1080
BsiWI CGTACG 1 cut(s) 690
BslFI GGGAC 3 cut(s) 138, 699, 1088
BsmAI GTCTC 3 cut(s) 45, 648, 1302
BsmBI CGTCTC 1 cut(s) 648
BsmFI GGGAC 3 cut(s) 138, 699, 1088
BsnI GGCC 4 cut(s) 1083, 1190, 1352, 1369
BsoBI CYCGRG 1 cut(s) 859
Bsp1286I GDGCHC 1 cut(s) 210
Bsp143I GATC 6 cut(s) 250, 349, 381, 969, 1008, 1339
Bsp1720I GCTNAGC 1 cut(s) 924
Bsp19I CCATGG 2 cut(s) 191, 774
BspANI GGCC 4 cut(s) 1083, 1190, 1352, 1369
BspCNI CTCAG 3 cut(s) 242, 871, 916
BspFNI CGCG 5 cut(s) 1037, 1086, 1134, 1139, 1265
BspHI TCATGA 2 cut(s) 550, 1390
BspLI GGNNCC 4 cut(s) 197, 245, 351, 687
BspPI GGATC 3 cut(s) 344, 357, 389
BspT107I GGYRCC 2 cut(s) 195, 243
BsrBI CCGCTC 1 cut(s) 379
BsrFI RCCGGY 1 cut(s) 1079
BsrI ACTGG 1 cut(s) 424
BssAI RCCGGY 1 cut(s) 1079
BssECI CCNNGG 5 cut(s) 191, 388, 473, 774, 860
BssMI GATC 6 cut(s) 250, 349, 381, 969, 1008, 1339
BssNI GRCGYC 1 cut(s) 196
BssSI CACGAG 1 cut(s) 48
BssT1I CCWWGG 4 cut(s) 191, 388, 473, 774
Bst2BI CACGAG 1 cut(s) 48
Bst2UI CCWGG 2 cut(s) 93, 1256
Bst4CI ACNGT 6 cut(s) 243, 575, 605, 674, 690, 944
BstACI GRCGYC 1 cut(s) 196
BstC8I GCNNGC 3 cut(s) 765, 1039, 1088
BstDEI CTNAG 4 cut(s) 87, 229, 879, 924
BstDSI CCRYGG 2 cut(s) 191, 774
BstF5I GGATG 2 cut(s) 141, 143
BstFNI CGCG 5 cut(s) 1037, 1086, 1134, 1139, 1265
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 4 cut(s) 198, 614, 1136, 1227
BstKTI GATC 6 cut(s) 253, 352, 384, 972, 1011, 1342
BstMAI GTCTC 3 cut(s) 45, 648, 1302
BstMBI GATC 6 cut(s) 250, 349, 381, 969, 1008, 1339
BstMCI CGRYCG 1 cut(s) 1084
BstMWI GCNNNNNNNGC 1 cut(s) 147
BstNI CCWGG 2 cut(s) 93, 1256
BstNSI RCATGY 1 cut(s) 1231
BstSCI CCNGG 2 cut(s) 91, 1254
BstSLI GKGCMC 1 cut(s) 210
BstUI CGCG 5 cut(s) 1037, 1086, 1134, 1139, 1265
BstV1I GCAGC 3 cut(s) 45, 308, 547
BstV2I GAAGAC 1 cut(s) 627
BstX2I RGATCY 2 cut(s) 349, 1339
BstXI CCANNNNNNTGG 1 cut(s) 395
BstYI RGATCY 2 cut(s) 349, 1339
BstZI CGGCCG 1 cut(s) 1081
BsuRI GGCC 4 cut(s) 1083, 1190, 1352, 1369
BtgI CCRYGG 2 cut(s) 191, 774
BtgZI GCGATG 1 cut(s) 904
BtrI CACGTC 2 cut(s) 854, 1246
BtsCI GGATG 2 cut(s) 141, 143
BtsIMutI CAGTG 1 cut(s) 610
Cac8I GCNNGC 3 cut(s) 765, 1039, 1088
CciI TCATGA 2 cut(s) 550, 1390
CfoI GCGC 4 cut(s) 198, 614, 1136, 1227
Cfr10I RCCGGY 1 cut(s) 1079
Cfr13I GGNCC 2 cut(s) 686, 1367
CseI GACGC 1 cut(s) 1043
Csp6I GTAC 3 cut(s) 244, 691, 723
CviQI GTAC 3 cut(s) 244, 691, 723
DdeI CTNAG 4 cut(s) 87, 229, 879, 924
DinI GGCGCC 1 cut(s) 197
DpnI GATC 6 cut(s) 252, 351, 383, 971, 1010, 1341
DpnII GATC 6 cut(s) 250, 349, 381, 969, 1008, 1339
DraI TTTAAA 1 cut(s) 600
DriI GACNNNNNGTC 1 cut(s) 1112
EaeI YGGCCR 2 cut(s) 1081, 1188
EagI CGGCCG 1 cut(s) 1081
Eam1105I GACNNNNNGTC 1 cut(s) 1112
EclXI CGGCCG 1 cut(s) 1081
Eco130I CCWWGG 4 cut(s) 191, 388, 473, 774
Eco47I GGWCC 1 cut(s) 686
Eco52I CGGCCG 1 cut(s) 1081
Eco88I CYCGRG 1 cut(s) 859
EcoRI GAATTC 2 cut(s) 289, 517
EcoRII CCWGG 2 cut(s) 91, 1254
EcoT14I CCWWGG 4 cut(s) 191, 388, 473, 774
EcoT22I ATGCAT 1 cut(s) 143
EgeI GGCGCC 1 cut(s) 197
EheI GGCGCC 1 cut(s) 197
ErhI CCWWGG 4 cut(s) 191, 388, 473, 774
Esp3I CGTCTC 1 cut(s) 648
FalI AAGNNNNNCTT 4 cut(s) 93, 125, 1326, 1358
FaqI GGGAC 3 cut(s) 138, 699, 1088
FauI CCCGC 1 cut(s) 772
FblI GTMKAC 1 cut(s) 630
Fnu4HI GCNGC 8 cut(s) 34, 297, 561, 876, 1084, 1121, 1137, 1266
FokI GGATG 2 cut(s) 128, 150
Fsp4HI GCNGC 8 cut(s) 34, 297, 561, 876, 1084, 1121, 1137, 1266
FspBI CTAG 2 cut(s) 474, 1091
GlaI GCGC 4 cut(s) 197, 613, 1135, 1226
GluI GCNGC 8 cut(s) 34, 297, 561, 876, 1084, 1121, 1137, 1266
GsaI CCCAGC 1 cut(s) 801
GsuI CTGGAG 1 cut(s) 114
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 4 cut(s) 1083, 1190, 1352, 1369
HapII CCGG 1 cut(s) 1080
HgaI GACGC 1 cut(s) 1043
HhaI GCGC 4 cut(s) 198, 614, 1136, 1227
Hin1I GRCGYC 1 cut(s) 196
Hin6I GCGC 4 cut(s) 196, 612, 1134, 1225
HinP1I GCGC 4 cut(s) 196, 612, 1134, 1225
HincII GTYRAC 1 cut(s) 69
HindII GTYRAC 1 cut(s) 69
HindIII AAGCTT 1 cut(s) 1317
HinfI GANTC 4 cut(s) 227, 554, 1107, 1216
HpaII CCGG 1 cut(s) 1080
HphI GGTGA 1 cut(s) 1138
Hpy166II GTNNAC 7 cut(s) 69, 106, 208, 372, 631, 905, 1233
Hpy188I TCNGA 4 cut(s) 7, 137, 411, 669
Hpy188III TCNNGA 9 cut(s) 48, 237, 551, 967, 992, 1168, 1220, 1343, 1391
Hpy8I GTNNAC 7 cut(s) 69, 106, 208, 372, 631, 905, 1233
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 3 cut(s) 119, 269, 319
HpyCH4III ACNGT 6 cut(s) 243, 575, 605, 674, 690, 944
HpyCH4IV ACGT 2 cut(s) 853, 1245
HpyCH4V TGCA 5 cut(s) 58, 141, 208, 563, 895
HpyF10VI GCNNNNNNNGC 1 cut(s) 147
HpyF3I CTNAG 4 cut(s) 87, 229, 879, 924
HpySE526I ACGT 2 cut(s) 853, 1245
Hsp92I GRCGYC 1 cut(s) 196
HspAI GCGC 4 cut(s) 196, 612, 1134, 1225
KasI GGCGCC 1 cut(s) 195
KpnI GGTACC 1 cut(s) 247
Kzo9I GATC 6 cut(s) 250, 349, 381, 969, 1008, 1339
Lsp1109I GCAGC 3 cut(s) 45, 308, 547
LweI GCATC 5 cut(s) 67, 128, 150, 1036, 1165
MaeI CTAG 2 cut(s) 474, 1091
MaeII ACGT 2 cut(s) 853, 1245
MaeIII GTNAC 5 cut(s) 224, 422, 455, 674, 854
MalI GATC 6 cut(s) 252, 351, 383, 971, 1010, 1341
MbiI CCGCTC 1 cut(s) 379
MboI GATC 6 cut(s) 250, 349, 381, 969, 1008, 1339
MboII GAAGA 6 cut(s) 398, 512, 632, 1119, 1289, 1349
MflI RGATCY 2 cut(s) 349, 1339
MhlI GDGCHC 1 cut(s) 210
MluCI AATT 7 cut(s) 131, 289, 341, 517, 595, 826, 956
Mly113I GGCGCC 1 cut(s) 196
MlyI GAGTC 3 cut(s) 221, 563, 1101
MmeI TCCRAC 2 cut(s) 252, 376
MnlI CCTC 6 cut(s) 4, 266, 825, 829, 855, 864
Mph1103I ATGCAT 1 cut(s) 143
MseI TTAA 5 cut(s) 176, 185, 267, 599, 978
MslI CAYNNNNRTG 1 cut(s) 1151
MspI CCGG 1 cut(s) 1080
MspR9I CCNGG 2 cut(s) 93, 1256
MvaI CCWGG 2 cut(s) 93, 1256
MvnI CGCG 5 cut(s) 1037, 1086, 1134, 1139, 1265
MwoI GCNNNNNNNGC 1 cut(s) 147
NarI GGCGCC 1 cut(s) 196
NcoI CCATGG 2 cut(s) 191, 774
NdeII GATC 6 cut(s) 250, 349, 381, 969, 1008, 1339
NlaIV GGNNCC 4 cut(s) 197, 245, 351, 687
NmeAIII GCCGAG 3 cut(s) 982, 1204, 1216
NmuCI GTSAC 3 cut(s) 224, 422, 854
NsiI ATGCAT 1 cut(s) 143
NspI RCATGY 1 cut(s) 1231
PagI TCATGA 2 cut(s) 550, 1390
PcsI WCGNNNNNNNCGW 2 cut(s) 259, 576
PfeI GAWTC 1 cut(s) 1216
Pfl23II CGTACG 1 cut(s) 690
PkrI GCNGC 8 cut(s) 35, 298, 562, 877, 1085, 1122, 1138, 1267
PleI GAGTC 3 cut(s) 221, 562, 1101
PluTI GGCGCC 1 cut(s) 199
PpsI GAGTC 3 cut(s) 221, 562, 1101
Psp6I CCWGG 2 cut(s) 91, 1254
PspFI CCCAGC 1 cut(s) 797
PspGI CCWGG 2 cut(s) 91, 1254
PspLI CGTACG 1 cut(s) 690
PspN4I GGNNCC 4 cut(s) 197, 245, 351, 687
PspPI GGNCC 2 cut(s) 686, 1367
PsuI RGATCY 2 cut(s) 349, 1339
RsaI GTAC 3 cut(s) 245, 692, 724
RsaNI GTAC 3 cut(s) 244, 691, 723
RseI CAYNNNNRTG 1 cut(s) 1151
SaqAI TTAA 5 cut(s) 176, 185, 267, 599, 978
SatI GCNGC 8 cut(s) 34, 297, 561, 876, 1084, 1121, 1137, 1266
Sau3AI GATC 6 cut(s) 250, 349, 381, 969, 1008, 1339
Sau96I GGNCC 2 cut(s) 686, 1367
ScaI AGTACT 1 cut(s) 724
SchI GAGTC 3 cut(s) 221, 563, 1101
ScrFI CCNGG 2 cut(s) 93, 1256
SduI GDGCHC 1 cut(s) 210
SfaNI GCATC 5 cut(s) 67, 128, 150, 1036, 1165
SfoI GGCGCC 1 cut(s) 197
SinI GGWCC 1 cut(s) 686
SmiMI CAYNNNNRTG 1 cut(s) 1151
SmlI CTYRAG 4 cut(s) 1022, 1166, 1283, 1404
SmoI CTYRAG 4 cut(s) 1022, 1166, 1283, 1404
Sse9I AATT 7 cut(s) 131, 289, 341, 517, 595, 826, 956
SspDI GGCGCC 1 cut(s) 195
SspMI CTAG 2 cut(s) 474, 1091
StyD4I CCNGG 2 cut(s) 91, 1254
StyI CCWWGG 4 cut(s) 191, 388, 473, 774
TaaI ACNGT 6 cut(s) 243, 575, 605, 674, 690, 944
TaiI ACGT 2 cut(s) 856, 1248
TaqI TCGA 4 cut(s) 287, 533, 1011, 1219
TaqII GACCGA 1 cut(s) 1187
TasI AATT 7 cut(s) 131, 289, 341, 517, 595, 826, 956
TatI WGTACW 1 cut(s) 722
TauI GCSGC 5 cut(s) 878, 1086, 1123, 1139, 1268
TfiI GAWTC 1 cut(s) 1216
Tru1I TTAA 5 cut(s) 176, 185, 267, 599, 978
Tru9I TTAA 5 cut(s) 176, 185, 267, 599, 978
TscAI CASTG 1 cut(s) 610
TseFI GTSAC 3 cut(s) 224, 422, 854
TseI GCWGC 3 cut(s) 33, 296, 560
Tsp45I GTSAC 3 cut(s) 224, 422, 854
TspDTI ATGAA 7 cut(s) 353, 633, 651, 1176, 1223, 1290, 1370
TspRI CASTG 1 cut(s) 610
VneI GTGCAC 1 cut(s) 206
VpaK11BI GGWCC 1 cut(s) 686
XapI RAATTY 4 cut(s) 289, 341, 517, 595
XceI RCATGY 1 cut(s) 1231
XcmI CCANNNNNNNNNTGG 1 cut(s) 781
XmaJI CCTAGG 1 cut(s) 473
XmiI GTMKAC 1 cut(s) 630
XspI CTAG 2 cut(s) 474, 1091
ZrmI AGTACT 1 cut(s) 724
Zsp2I ATGCAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.