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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 166 |
| AccI | GTMKAC | 1 cut(s) | 694 |
| AccII | CGCG | 2 cut(s) | 482, 828 |
| AciI | CCGC | 4 cut(s) | 77, 161, 482, 744 |
| AclI | AACGTT | 1 cut(s) | 570 |
| AclWI | GGATC | 1 cut(s) | 507 |
| AcoI | YGGCCR | 2 cut(s) | 483, 688 |
| AcsI | RAATTY | 4 cut(s) | 32, 44, 894, 926 |
| AdeI | CACNNNGTG | 1 cut(s) | 207 |
| AfaI | GTAC | 1 cut(s) | 351 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 556 |
| AgsI | TTSAA | 8 cut(s) | 39, 49, 332, 556, 620, 701, 788, 893 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 322 |
| AhlI | ACTAGT | 1 cut(s) | 971 |
| AluBI | AGCT | 9 cut(s) | 56, 287, 407, 421, 565, 751, 851, 889, 917 |
| AluI | AGCT | 9 cut(s) | 56, 287, 407, 421, 565, 751, 851, 889, 917 |
| AlwI | GGATC | 1 cut(s) | 507 |
| Ama87I | CYCGRG | 1 cut(s) | 738 |
| AoxI | GGCC | 2 cut(s) | 483, 688 |
| ApeKI | GCWGC | 1 cut(s) | 287 |
| ApoI | RAATTY | 4 cut(s) | 32, 44, 894, 926 |
| AspLEI | GCGC | 2 cut(s) | 586, 765 |
| AspS9I | GGNCC | 1 cut(s) | 137 |
| AsuHPI | GGTGA | 3 cut(s) | 415, 545, 872 |
| AvaI | CYCGRG | 1 cut(s) | 738 |
| AvaII | GGWCC | 1 cut(s) | 137 |
| BauI | CACGAG | 1 cut(s) | 205 |
| BbsI | GAAGAC | 1 cut(s) | 225 |
| BbvI | GCAGC | 1 cut(s) | 274 |
| BccI | CCATC | 1 cut(s) | 130 |
| BceAI | ACGGC | 2 cut(s) | 534, 675 |
| BcuI | ACTAGT | 1 cut(s) | 971 |
| BfaI | CTAG | 5 cut(s) | 150, 413, 438, 870, 972 |
| BfmI | CTRYAG | 2 cut(s) | 27, 766 |
| BfuAI | ACCTGC | 1 cut(s) | 166 |
| BisI | GCNGC | 4 cut(s) | 161, 288, 483, 744 |
| BlsI | GCNGC | 4 cut(s) | 162, 289, 484, 745 |
| Bme18I | GGWCC | 1 cut(s) | 137 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 322 |
| BmeT110I | CYCGRG | 1 cut(s) | 738 |
| BmgT120I | GGNCC | 1 cut(s) | 137 |
| BmiI | GGNNCC | 1 cut(s) | 138 |
| BmrI | ACTGGG | 1 cut(s) | 991 |
| BmsI | GCATC | 1 cut(s) | 64 |
| BmuI | ACTGGG | 1 cut(s) | 991 |
| BpiI | GAAGAC | 1 cut(s) | 225 |
| Bpu10I | CCTNAGC | 1 cut(s) | 403 |
| BpuEI | CTTGAG | 3 cut(s) | 650, 886, 906 |
| BsaJI | CCNNGG | 1 cut(s) | 354 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 705, 735 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 556 |
| Bse118I | RCCGGY | 1 cut(s) | 686 |
| Bse1I | ACTGG | 2 cut(s) | 233, 986 |
| BseDI | CCNNGG | 1 cut(s) | 354 |
| BseGI | GGATG | 5 cut(s) | 10, 79, 122, 364, 646 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 556 |
| BseMII | CTCAG | 1 cut(s) | 854 |
| BseNI | ACTGG | 2 cut(s) | 233, 986 |
| BseRI | GAGGAG | 1 cut(s) | 575 |
| BseX3I | CGGCCG | 1 cut(s) | 688 |
| BseXI | GCAGC | 1 cut(s) | 274 |
| BseYI | CCCAGC | 1 cut(s) | 245 |
| Bsh1236I | CGCG | 2 cut(s) | 482, 828 |
| Bsh1285I | CGRYCG | 2 cut(s) | 691, 832 |
| BshFI | GGCC | 2 cut(s) | 485, 690 |
| BsiEI | CGRYCG | 2 cut(s) | 691, 832 |
| BsiHKCI | CYCGRG | 1 cut(s) | 738 |
| BsiSI | CCGG | 1 cut(s) | 687 |
| BslFI | GGGAC | 3 cut(s) | 125, 695, 998 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 556 |
| BsmFI | GGGAC | 3 cut(s) | 125, 695, 998 |
| BsmI | GAATGC | 1 cut(s) | 648 |
| BsnI | GGCC | 2 cut(s) | 485, 690 |
| BsoBI | CYCGRG | 1 cut(s) | 738 |
| Bsp143I | GATC | 3 cut(s) | 427, 499, 576 |
| Bsp68I | TCGCGA | 1 cut(s) | 828 |
| BspACI | CCGC | 4 cut(s) | 77, 161, 482, 744 |
| BspANI | GGCC | 2 cut(s) | 485, 690 |
| BspCNI | CTCAG | 1 cut(s) | 853 |
| BspFNI | CGCG | 2 cut(s) | 482, 828 |
| BspHI | TCATGA | 2 cut(s) | 97, 598 |
| BspLI | GGNNCC | 1 cut(s) | 138 |
| BspMI | ACCTGC | 1 cut(s) | 166 |
| BspPI | GGATC | 1 cut(s) | 507 |
| BsrFI | RCCGGY | 1 cut(s) | 686 |
| BsrI | ACTGG | 2 cut(s) | 233, 986 |
| BssAI | RCCGGY | 1 cut(s) | 686 |
| BssECI | CCNNGG | 1 cut(s) | 354 |
| BssMI | GATC | 3 cut(s) | 427, 499, 576 |
| BssSI | CACGAG | 1 cut(s) | 205 |
| BssT1I | CCWWGG | 1 cut(s) | 354 |
| Bst2BI | CACGAG | 1 cut(s) | 205 |
| Bst4CI | ACNGT | 2 cut(s) | 833, 884 |
| Bst6I | CTCTTC | 1 cut(s) | 15 |
| BstC8I | GCNNGC | 3 cut(s) | 158, 243, 959 |
| BstDEI | CTNAG | 3 cut(s) | 403, 840, 936 |
| BstF5I | GGATG | 5 cut(s) | 10, 79, 122, 364, 646 |
| BstFNI | CGCG | 2 cut(s) | 482, 828 |
| BstHHI | GCGC | 2 cut(s) | 586, 765 |
| BstKTI | GATC | 3 cut(s) | 430, 502, 579 |
| BstMBI | GATC | 3 cut(s) | 427, 499, 576 |
| BstMCI | CGRYCG | 2 cut(s) | 691, 832 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 418, 482 |
| BstNSI | RCATGY | 2 cut(s) | 160, 815 |
| BstSFI | CTRYAG | 2 cut(s) | 27, 766 |
| BstUI | CGCG | 2 cut(s) | 482, 828 |
| BstV1I | GCAGC | 1 cut(s) | 274 |
| BstV2I | GAAGAC | 1 cut(s) | 225 |
| BstX2I | RGATCY | 1 cut(s) | 499 |
| BstYI | RGATCY | 1 cut(s) | 499 |
| BstZI | CGGCCG | 1 cut(s) | 688 |
| BsuRI | GGCC | 2 cut(s) | 485, 690 |
| BtsCI | GGATG | 5 cut(s) | 10, 79, 122, 364, 646 |
| BtsI | GCAGTG | 1 cut(s) | 663 |
| BtsIMutI | CAGTG | 1 cut(s) | 663 |
| BtuMI | TCGCGA | 1 cut(s) | 828 |
| BveI | ACCTGC | 1 cut(s) | 166 |
| Cac8I | GCNNGC | 3 cut(s) | 158, 243, 959 |
| CciI | TCATGA | 2 cut(s) | 97, 598 |
| CfoI | GCGC | 2 cut(s) | 586, 765 |
| Cfr10I | RCCGGY | 1 cut(s) | 686 |
| Cfr13I | GGNCC | 1 cut(s) | 137 |
| CseI | GACGC | 1 cut(s) | 995 |
| Csp6I | GTAC | 1 cut(s) | 350 |
| CviQI | GTAC | 1 cut(s) | 350 |
| DdeI | CTNAG | 3 cut(s) | 403, 840, 936 |
| DpnI | GATC | 3 cut(s) | 429, 501, 578 |
| DpnII | GATC | 3 cut(s) | 427, 499, 576 |
| DraIII | CACNNNGTG | 1 cut(s) | 207 |
| DriI | GACNNNNNGTC | 1 cut(s) | 322 |
| EaeI | YGGCCR | 2 cut(s) | 483, 688 |
| EagI | CGGCCG | 1 cut(s) | 688 |
| Eam1104I | CTCTTC | 1 cut(s) | 15 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 322 |
| EarI | CTCTTC | 1 cut(s) | 15 |
| EclXI | CGGCCG | 1 cut(s) | 688 |
| Eco130I | CCWWGG | 1 cut(s) | 354 |
| Eco47I | GGWCC | 1 cut(s) | 137 |
| Eco52I | CGGCCG | 1 cut(s) | 688 |
| Eco88I | CYCGRG | 1 cut(s) | 738 |
| EcoO109I | RGGNCCY | 1 cut(s) | 137 |
| EcoRI | GAATTC | 1 cut(s) | 926 |
| EcoT14I | CCWWGG | 1 cut(s) | 354 |
| ErhI | CCWWGG | 1 cut(s) | 354 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 612, 644 |
| FaqI | GGGAC | 3 cut(s) | 125, 695, 998 |
| FblI | GTMKAC | 1 cut(s) | 694 |
| Fnu4HI | GCNGC | 4 cut(s) | 161, 288, 483, 744 |
| FokI | GGATG | 5 cut(s) | 17, 86, 109, 371, 653 |
| Fsp4HI | GCNGC | 4 cut(s) | 161, 288, 483, 744 |
| FspBI | CTAG | 5 cut(s) | 150, 413, 438, 870, 972 |
| GlaI | GCGC | 2 cut(s) | 585, 764 |
| GluI | GCNGC | 4 cut(s) | 161, 288, 483, 744 |
| GsaI | CCCAGC | 1 cut(s) | 249 |
| HaeIII | GGCC | 2 cut(s) | 485, 690 |
| HapII | CCGG | 1 cut(s) | 687 |
| HgaI | GACGC | 1 cut(s) | 995 |
| HhaI | GCGC | 2 cut(s) | 586, 765 |
| Hin6I | GCGC | 2 cut(s) | 584, 763 |
| HinP1I | GCGC | 2 cut(s) | 584, 763 |
| HincII | GTYRAC | 1 cut(s) | 460 |
| HindII | GTYRAC | 1 cut(s) | 460 |
| HinfI | GANTC | 3 cut(s) | 335, 838, 1000 |
| HpaII | CCGG | 1 cut(s) | 687 |
| HphI | GGTGA | 3 cut(s) | 415, 545, 872 |
| Hpy166II | GTNNAC | 3 cut(s) | 460, 658, 695 |
| Hpy188I | TCNGA | 2 cut(s) | 220, 843 |
| Hpy188III | TCNNGA | 7 cut(s) | 98, 182, 599, 738, 788, 827, 923 |
| Hpy8I | GTNNAC | 3 cut(s) | 460, 658, 695 |
| Hpy99I | CGWCG | 1 cut(s) | 278 |
| HpyAV | CCTTC | 1 cut(s) | 80 |
| HpyCH4III | ACNGT | 2 cut(s) | 833, 884 |
| HpyCH4IV | ACGT | 2 cut(s) | 223, 570 |
| HpyCH4V | TGCA | 3 cut(s) | 82, 725, 821 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 418, 482 |
| HpyF3I | CTNAG | 3 cut(s) | 403, 840, 936 |
| HpySE526I | ACGT | 2 cut(s) | 223, 570 |
| HspAI | GCGC | 2 cut(s) | 584, 763 |
| Kzo9I | GATC | 3 cut(s) | 427, 499, 576 |
| LmnI | GCTCC | 1 cut(s) | 562 |
| LpnPI | CCDG | 9 cut(s) | 93, 139, 161, 214, 231, 666, 700, 872, 967 |
| Lsp1109I | GCAGC | 1 cut(s) | 274 |
| LweI | GCATC | 1 cut(s) | 64 |
| MaeI | CTAG | 5 cut(s) | 150, 413, 438, 870, 972 |
| MaeII | ACGT | 2 cut(s) | 223, 570 |
| MaeIII | GTNAC | 1 cut(s) | 224 |
| MalI | GATC | 3 cut(s) | 429, 501, 578 |
| MboI | GATC | 3 cut(s) | 427, 499, 576 |
| MboII | GAAGA | 8 cut(s) | 32, 225, 344, 377, 632, 956, 995, 1009 |
| MfeI | CAATTG | 1 cut(s) | 327 |
| MflI | RGATCY | 1 cut(s) | 499 |
| MlyI | GAGTC | 1 cut(s) | 832 |
| MmeI | TCCRAC | 1 cut(s) | 783 |
| MslI | CAYNNNNRTG | 1 cut(s) | 882 |
| MspI | CCGG | 1 cut(s) | 687 |
| MunI | CAATTG | 1 cut(s) | 327 |
| Mva1269I | GAATGC | 1 cut(s) | 648 |
| MvnI | CGCG | 2 cut(s) | 482, 828 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 418, 482 |
| NdeII | GATC | 3 cut(s) | 427, 499, 576 |
| NlaIV | GGNNCC | 1 cut(s) | 138 |
| NmeAIII | GCCGAG | 2 cut(s) | 560, 823 |
| NmuCI | GTSAC | 1 cut(s) | 224 |
| NruI | TCGCGA | 1 cut(s) | 828 |
| NspI | RCATGY | 2 cut(s) | 160, 815 |
| PaeI | GCATGC | 1 cut(s) | 160 |
| PaeR7I | CTCGAG | 1 cut(s) | 738 |
| PagI | TCATGA | 2 cut(s) | 97, 598 |
| PctI | GAATGC | 1 cut(s) | 648 |
| PfeI | GAWTC | 2 cut(s) | 335, 1000 |
| PkrI | GCNGC | 4 cut(s) | 162, 289, 484, 745 |
| PleI | GAGTC | 1 cut(s) | 832 |
| PpsI | GAGTC | 1 cut(s) | 832 |
| PpuMI | RGGWCCY | 1 cut(s) | 137 |
| Psp1406I | AACGTT | 1 cut(s) | 570 |
| Psp5II | RGGWCCY | 1 cut(s) | 137 |
| PspFI | CCCAGC | 1 cut(s) | 245 |
| PspN4I | GGNNCC | 1 cut(s) | 138 |
| PspPI | GGNCC | 1 cut(s) | 137 |
| PspPPI | RGGWCCY | 1 cut(s) | 137 |
| PsuI | RGATCY | 1 cut(s) | 499 |
| RruI | TCGCGA | 1 cut(s) | 828 |
| RsaI | GTAC | 1 cut(s) | 351 |
| RsaNI | GTAC | 1 cut(s) | 350 |
| RseI | CAYNNNNRTG | 1 cut(s) | 882 |
| SatI | GCNGC | 4 cut(s) | 161, 288, 483, 744 |
| Sau3AI | GATC | 3 cut(s) | 427, 499, 576 |
| Sau96I | GGNCC | 1 cut(s) | 137 |
| SchI | GAGTC | 1 cut(s) | 832 |
| SfaNI | GCATC | 1 cut(s) | 64 |
| SfcI | CTRYAG | 2 cut(s) | 27, 766 |
| Sfr274I | CTCGAG | 1 cut(s) | 738 |
| SinI | GGWCC | 1 cut(s) | 137 |
| SlaI | CTCGAG | 1 cut(s) | 738 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 882 |
| SmlI | CTYRAG | 4 cut(s) | 629, 738, 901, 921 |
| SmoI | CTYRAG | 4 cut(s) | 629, 738, 901, 921 |
| SpeI | ACTAGT | 1 cut(s) | 971 |
| SphI | GCATGC | 1 cut(s) | 160 |
| SsiI | CCGC | 4 cut(s) | 77, 161, 482, 744 |
| SspMI | CTAG | 5 cut(s) | 150, 413, 438, 870, 972 |
| StyI | CCWWGG | 1 cut(s) | 354 |
| TaaI | ACNGT | 2 cut(s) | 833, 884 |
| TaiI | ACGT | 2 cut(s) | 226, 573 |
| TaqI | TCGA | 2 cut(s) | 273, 739 |
| TauI | GCSGC | 3 cut(s) | 163, 485, 746 |
| TfiI | GAWTC | 2 cut(s) | 335, 1000 |
| TscAI | CASTG | 1 cut(s) | 670 |
| TseFI | GTSAC | 1 cut(s) | 224 |
| TseI | GCWGC | 1 cut(s) | 287 |
| Tsp45I | GTSAC | 1 cut(s) | 224 |
| TspDTI | ATGAA | 7 cut(s) | 86, 99, 114, 201, 297, 459, 615 |
| TspGWI | ACGGA | 1 cut(s) | 337 |
| TspRI | CASTG | 1 cut(s) | 670 |
| VpaK11BI | GGWCC | 1 cut(s) | 137 |
| XapI | RAATTY | 4 cut(s) | 32, 44, 894, 926 |
| XceI | RCATGY | 2 cut(s) | 160, 815 |
| XhoI | CTCGAG | 1 cut(s) | 738 |
| XmiI | GTMKAC | 1 cut(s) | 694 |
| XspI | CTAG | 5 cut(s) | 150, 413, 438, 870, 972 |