Rmu_sc0002759.1_g000017

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002759.1
OG0000063
Physical Location & Seq
Forward (+)
89393 .. 91974
2582 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002759.1_g000017.1.cds

Sequence Viewer

Length: 1830 bp
atgcccctagctcttggaccatttgttctagctcgcctctaccgtactctgcgcaatgtggtggttgataatatgaatttggacatcggaggatcattatggatgttccaagtgtgggtacaaacctattttcatcagcttcggccactatgccctccatttgtccctaccatgacacttggccgtcagattatacccctcggcattcattcacattcggccgcgaagtgctttggtttcttcttttcaaagaaaggcatgtccaaggatgagtttgccatatgttacagtcgagatcacccttcttgtcttgcgattgacatatcaacattatgggagaagaaattagacttggatgtgattctatcttggggaagtattctgatttctcgggacttgaactacggcctcaaaggtacagtgggtcggtatggtgttgagtgttcggccgttgataagtactacgaggagcaatttggcaagtttgaaaggtccggcctaaagcctcgttgtcctgttcatagagccaccccacacttccatgcatggtggtcaacttttatcatgaaaaatcttggaaaggacttggctgggacccaacgtgctgcgttacaaggacttctgaacttgctaggccccaatgaaggtaatggtaagcagaaagcactggatggcaaatcaaaatcaaccaaaggatcctctaaacaaggacaaacatcaaagaaacgtggctcaacattggggtatactcgaaacgccaagaaaacaaagaaatcatttgatgtggtggagaattcggtcacaaacccgacggacactgtggttagtgaggacatatgttttgaggctaatatggatgatggccatgatgctttggctgacaaccaaaatacacctgaaattgaggatatggccgaaactggtgacgcctcgatcaatagagcggactcggctgatagcgaaggttcttcggaagaagctcaatcagaaagtggtgatcaagaggacttgggtgagaaccaacttcacaacacatctagcatcggccaacagcttgccataacaaacaacttttccaaggatgttgaagacaccaatgcacgtggccgcgaaacactacttatccatcagacattggttcaggtgggagaatctcgaaacagtacaaacctagaattggctcttctcaaccaaactgaaacacatccccctatgttcggaactcttacctctcctcctaatgacgggatgtgtcaaactgagcaagctatcgtttgcgctccatcttcggccgagcttgtggatcatacagcggatgatcttggtttggacctacttcaattcctagatactctagacaacaccaagagtcccgaagaggaaaaacttgaaacagatgaaaccaaaaaggcacttgagacggtcagacaatttttgggttatgatgtgaggacagtgaccgaggctagttttctctctttcaaggaggcggttgaagtacttatttcagccaaacatttctctcaggtagaggcttatgaagttcatgctcgtttggctgttaagttgaagacttctttggacgagggaaggcaaaaagtgcttgatctgaggaagcagttggccgaagctgaaaagcaagtcaaagtcacttcggccgccatccgaaccattgttccccaacaagatcttaccaagtatagcttgattctgtcatcggtcaagtcgtataacaagaagaggggcattttgaagcgaaaggtcgaccaaggtatgcaagacttagaagatgttaaagaagctcttcggtcactcttgcccactgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

609

Amino Acids

67.56

Weight (kDa)

5.66

Isoelectric Point (pI)

33.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 53
AccBSI CCGCTC 1 cut(s) 944
AccI GTMKAC 2 cut(s) 746, 1764
AccII CGCG 2 cut(s) 224, 1110
AciI CCGC 6 cut(s) 222, 944, 1108, 1313, 1490, 1659
AclWI GGATC 4 cut(s) 100, 690, 703, 1311
AcsI RAATTY 2 cut(s) 76, 793
AcvI CACGTG 1 cut(s) 1103
AcyI GRCGYC 1 cut(s) 927
AfaI GTAC 6 cut(s) 46, 120, 418, 461, 1165, 1500
AfiI CCNNNNNNNGG 5 cut(s) 115, 644, 1177, 1217, 1244
AjuI GAANNNNNNNTTGG 4 cut(s) 335, 367, 1562, 1594
AloI GAACNNNNNNTCC 4 cut(s) 9, 41, 1660, 1692
Alw26I GTCTC 1 cut(s) 1412
AlwI GGATC 4 cut(s) 100, 690, 703, 1311
Ama87I CYCGRG 1 cut(s) 390
ApeKI GCWGC 1 cut(s) 605
ApoI RAATTY 2 cut(s) 76, 793
ArsI GACNNNNNNTTYG 2 cut(s) 824, 856
Asp700I GAANNNNTTC 1 cut(s) 1803
AspLEI GCGC 2 cut(s) 54, 1280
AspS9I GGNCC 5 cut(s) 17, 492, 594, 635, 1330
AsuHPI GGTGA 4 cut(s) 290, 935, 1007, 1025
AvaI CYCGRG 1 cut(s) 390
AvaII GGWCC 4 cut(s) 17, 492, 594, 1330
BalI TGGCCA 1 cut(s) 864
BamHI GGATCC 1 cut(s) 695
BbrPI CACGTG 1 cut(s) 1103
BbsI GAAGAC 2 cut(s) 1095, 1577
BbvI GCAGC 1 cut(s) 592
BccI CCATC 5 cut(s) 665, 854, 1134, 1291, 1670
BceAI ACGGC 3 cut(s) 168, 421, 434
BclI TGATCA 1 cut(s) 997
BcoDI GTCTC 1 cut(s) 1412
BfaI CTAG 8 cut(s) 8, 29, 632, 1038, 1172, 1346, 1355, 1467
BglII AGATCT 1 cut(s) 1687
BisI GCNGC 4 cut(s) 222, 606, 1108, 1659
BlsI GCNGC 4 cut(s) 223, 607, 1109, 1660
BmcAI AGTACT 2 cut(s) 461, 1500
Bme18I GGWCC 4 cut(s) 17, 492, 594, 1330
BmeT110I CYCGRG 1 cut(s) 390
BmgT120I GGNCC 5 cut(s) 17, 492, 594, 635, 1330
BmiI GGNNCC 4 cut(s) 595, 596, 637, 697
BmsI GCATC 2 cut(s) 859, 1050
BpiI GAAGAC 2 cut(s) 1095, 1577
BpuEI CTTGAG 1 cut(s) 1436
BsaAI YACGTR 1 cut(s) 1103
BsaHI GRCGYC 1 cut(s) 927
BsaJI CCNNGG 5 cut(s) 199, 264, 1077, 1461, 1768
BsaXI ACNNNNNCTCC 2 cut(s) 1219, 1249
Bsc4I CCNNNNNNNGG 5 cut(s) 115, 644, 1177, 1217, 1244
Bse1I ACTGG 2 cut(s) 672, 925
Bse3DI GCAATG 1 cut(s) 61
BseDI CCNNGG 5 cut(s) 199, 264, 1077, 1461, 1768
BseLI CCNNNNNNNGG 5 cut(s) 115, 644, 1177, 1217, 1244
BseMI GCAATG 1 cut(s) 61
BseMII CTCAG 3 cut(s) 1251, 1538, 1601
BseNI ACTGG 2 cut(s) 672, 925
BseRI GAGGAG 2 cut(s) 482, 1224
BseX3I CGGCCG 4 cut(s) 219, 447, 1290, 1656
BseXI GCAGC 1 cut(s) 592
BseYI CCCAGC 1 cut(s) 590
Bsh1236I CGCG 2 cut(s) 224, 1110
Bsh1285I CGRYCG 4 cut(s) 222, 450, 1293, 1659
BsiEI CGRYCG 4 cut(s) 222, 450, 1293, 1659
BsiHKCI CYCGRG 1 cut(s) 390
BsiSI CCGG 1 cut(s) 495
BslFI GGGAC 4 cut(s) 149, 407, 607, 1356
BslI CCNNNNNNNGG 5 cut(s) 115, 644, 1177, 1217, 1244
BsmAI GTCTC 1 cut(s) 1412
BsmBI CGTCTC 1 cut(s) 1412
BsmFI GGGAC 4 cut(s) 149, 407, 607, 1356
BsmI GAATGC 1 cut(s) 204
BsoBI CYCGRG 1 cut(s) 390
Bsp143I GATC 9 cut(s) 92, 295, 695, 933, 997, 1303, 1318, 1606, 1687
BspACI CCGC 6 cut(s) 222, 944, 1108, 1313, 1490, 1659
BspCNI CTCAG 3 cut(s) 1252, 1537, 1602
BspFNI CGCG 2 cut(s) 224, 1110
BspHI TCATGA 1 cut(s) 564
BspLI GGNNCC 4 cut(s) 595, 596, 637, 697
BspPI GGATC 4 cut(s) 100, 690, 703, 1311
BspQI GCTCTTC 2 cut(s) 1188, 1809
BsrBI CCGCTC 1 cut(s) 944
BsrDI GCAATG 1 cut(s) 61
BsrI ACTGG 2 cut(s) 672, 925
BssECI CCNNGG 5 cut(s) 199, 264, 1077, 1461, 1768
BssMI GATC 9 cut(s) 92, 295, 695, 933, 997, 1303, 1318, 1606, 1687
BssNAI GTATAC 1 cut(s) 747
BssNI GRCGYC 1 cut(s) 927
BssT1I CCWWGG 3 cut(s) 264, 1077, 1768
Bst1107I GTATAC 1 cut(s) 747
Bst4CI ACNGT 7 cut(s) 44, 290, 421, 820, 1163, 1423, 1456
Bst6I CTCTTC 4 cut(s) 1188, 1371, 1733, 1809
BstACI GRCGYC 1 cut(s) 927
BstAPI GCANNNNNTGC 1 cut(s) 1600
BstBAI YACGTR 1 cut(s) 1103
BstC8I GCNNGC 3 cut(s) 34, 1056, 1266
BstDEI CTNAG 4 cut(s) 1260, 1524, 1610, 1783
BstFNI CGCG 2 cut(s) 224, 1110
BstHHI GCGC 2 cut(s) 54, 1280
BstKTI GATC 9 cut(s) 95, 298, 698, 936, 1000, 1306, 1321, 1609, 1690
BstMAI GTCTC 1 cut(s) 1412
BstMBI GATC 9 cut(s) 92, 295, 695, 933, 997, 1303, 1318, 1606, 1687
BstMCI CGRYCG 4 cut(s) 222, 450, 1293, 1659
BstMWI GCNNNNNNNGC 3 cut(s) 950, 1556, 1600
BstNSI RCATGY 1 cut(s) 262
BstUI CGCG 2 cut(s) 224, 1110
BstV1I GCAGC 1 cut(s) 592
BstV2I GAAGAC 2 cut(s) 1095, 1577
BstX2I RGATCY 2 cut(s) 695, 1687
BstYI RGATCY 2 cut(s) 695, 1687
BstZ17I GTATAC 1 cut(s) 747
BstZI CGGCCG 4 cut(s) 219, 447, 1290, 1656
BtsIMutI CAGTG 5 cut(s) 426, 665, 816, 1461, 1821
Cac8I GCNNGC 3 cut(s) 34, 1056, 1266
CciI TCATGA 1 cut(s) 564
CfoI GCGC 2 cut(s) 54, 1280
Cfr13I GGNCC 5 cut(s) 17, 492, 594, 635, 1330
CseI GACGC 1 cut(s) 935
Csp6I GTAC 6 cut(s) 45, 119, 417, 460, 1164, 1499
CspCI CAANNNNNGTGG 2 cut(s) 1084, 1119
CviAII CATG 7 cut(s) 172, 259, 542, 546, 565, 866, 1547
CviQI GTAC 6 cut(s) 45, 119, 417, 460, 1164, 1499
DdeI CTNAG 4 cut(s) 1260, 1524, 1610, 1783
DpnI GATC 9 cut(s) 94, 297, 697, 935, 999, 1305, 1320, 1608, 1689
DpnII GATC 9 cut(s) 92, 295, 695, 933, 997, 1303, 1318, 1606, 1687
EagI CGGCCG 4 cut(s) 219, 447, 1290, 1656
Eam1104I CTCTTC 4 cut(s) 1188, 1371, 1733, 1809
EarI CTCTTC 4 cut(s) 1188, 1371, 1733, 1809
EclXI CGGCCG 4 cut(s) 219, 447, 1290, 1656
Eco130I CCWWGG 3 cut(s) 264, 1077, 1768
Eco47I GGWCC 4 cut(s) 17, 492, 594, 1330
Eco52I CGGCCG 4 cut(s) 219, 447, 1290, 1656
Eco72I CACGTG 1 cut(s) 1103
Eco88I CYCGRG 1 cut(s) 390
EcoO109I RGGNCCY 2 cut(s) 594, 635
EcoRI GAATTC 1 cut(s) 793
EcoT14I CCWWGG 3 cut(s) 264, 1077, 1768
EcoT22I ATGCAT 1 cut(s) 547
ErhI CCWWGG 3 cut(s) 264, 1077, 1768
Esp3I CGTCTC 1 cut(s) 1412
FaeI CATG 7 cut(s) 175, 262, 545, 549, 568, 869, 1550
FalI AAGNNNNNCTT 4 cut(s) 1688, 1720, 1788, 1820
FaqI GGGAC 4 cut(s) 149, 407, 607, 1356
FatI CATG 7 cut(s) 171, 258, 541, 545, 564, 865, 1546
FauNDI CATATG 2 cut(s) 281, 836
FbaI TGATCA 1 cut(s) 997
FblI GTMKAC 2 cut(s) 746, 1764
Fnu4HI GCNGC 4 cut(s) 222, 606, 1108, 1659
Fsp4HI GCNGC 4 cut(s) 222, 606, 1108, 1659
FspBI CTAG 8 cut(s) 8, 29, 632, 1038, 1172, 1346, 1355, 1467
FspI TGCGCA 1 cut(s) 53
GlaI GCGC 2 cut(s) 53, 1279
GluI GCNGC 4 cut(s) 222, 606, 1108, 1659
GsaI CCCAGC 1 cut(s) 594
HapII CCGG 1 cut(s) 495
HgaI GACGC 1 cut(s) 935
HhaI GCGC 2 cut(s) 54, 1280
Hin1I GRCGYC 1 cut(s) 927
Hin1II CATG 7 cut(s) 175, 262, 545, 549, 568, 869, 1550
Hin6I GCGC 2 cut(s) 52, 1278
HinP1I GCGC 2 cut(s) 52, 1278
HincII GTYRAC 2 cut(s) 555, 1765
HindII GTYRAC 2 cut(s) 555, 1765
HinfI GANTC 5 cut(s) 361, 947, 1151, 1369, 1708
HpaII CCGG 1 cut(s) 495
HphI GGTGA 4 cut(s) 290, 935, 1007, 1025
Hpy166II GTNNAC 3 cut(s) 555, 747, 1765
Hpy188III TCNNGA 7 cut(s) 293, 392, 565, 1001, 1155, 1355, 1373
Hpy8I GTNNAC 3 cut(s) 555, 747, 1765
Hpy99I CGWCG 1 cut(s) 814
HpyAV CCTTC 4 cut(s) 312, 638, 956, 1584
HpyCH4III ACNGT 7 cut(s) 44, 290, 421, 820, 1163, 1423, 1456
HpyCH4IV ACGT 3 cut(s) 601, 727, 1102
HpyCH4V TGCA 3 cut(s) 545, 1100, 1777
HpyF10VI GCNNNNNNNGC 3 cut(s) 950, 1556, 1600
HpyF3I CTNAG 4 cut(s) 1260, 1524, 1610, 1783
HpySE526I ACGT 3 cut(s) 601, 727, 1102
Hsp92I GRCGYC 1 cut(s) 927
Hsp92II CATG 7 cut(s) 175, 262, 545, 549, 568, 869, 1550
HspAI GCGC 2 cut(s) 52, 1278
KflI GGGWCCC 1 cut(s) 594
Ksp22I TGATCA 1 cut(s) 997
Kzo9I GATC 9 cut(s) 92, 295, 695, 933, 997, 1303, 1318, 1606, 1687
LguI GCTCTTC 2 cut(s) 1188, 1809
LmnI GCTCC 2 cut(s) 469, 1285
LpnPI CCDG 8 cut(s) 508, 528, 576, 653, 906, 909, 1127, 1511
Lsp1109I GCAGC 1 cut(s) 592
LweI GCATC 2 cut(s) 859, 1050
MaeI CTAG 8 cut(s) 8, 29, 632, 1038, 1172, 1346, 1355, 1467
MaeII ACGT 3 cut(s) 601, 727, 1102
MaeIII GTNAC 7 cut(s) 284, 609, 799, 923, 1456, 1648, 1809
MalI GATC 9 cut(s) 94, 297, 697, 935, 999, 1305, 1320, 1608, 1689
MbiI CCGCTC 1 cut(s) 944
MboI GATC 9 cut(s) 92, 295, 695, 933, 997, 1303, 1318, 1606, 1687
MflI RGATCY 2 cut(s) 695, 1687
MlsI TGGCCA 1 cut(s) 864
MluCI AATT 8 cut(s) 76, 344, 473, 793, 900, 1175, 1340, 1430
MluNI TGGCCA 1 cut(s) 864
MlyI GAGTC 2 cut(s) 941, 1378
Mox20I TGGCCA 1 cut(s) 864
Mph1103I ATGCAT 1 cut(s) 547
MroXI GAANNNNTTC 1 cut(s) 1803
MscI TGGCCA 1 cut(s) 864
MseI TTAA 2 cut(s) 1563, 1794
MslI CAYNNNNRTG 1 cut(s) 540
Msp20I TGGCCA 1 cut(s) 864
MspA1I CMGCKG 1 cut(s) 1313
MspI CCGG 1 cut(s) 495
Mva1269I GAATGC 1 cut(s) 204
MvnI CGCG 2 cut(s) 224, 1110
MwoI GCNNNNNNNGC 3 cut(s) 950, 1556, 1600
NdeI CATATG 2 cut(s) 281, 836
NdeII GATC 9 cut(s) 92, 295, 695, 933, 997, 1303, 1318, 1606, 1687
NlaIII CATG 7 cut(s) 175, 262, 545, 549, 568, 869, 1550
NlaIV GGNNCC 4 cut(s) 595, 596, 637, 697
NmeAIII GCCGAG 3 cut(s) 180, 929, 1318
NmuCI GTSAC 5 cut(s) 799, 923, 1456, 1648, 1809
NsbI TGCGCA 1 cut(s) 53
NsiI ATGCAT 1 cut(s) 547
NspI RCATGY 1 cut(s) 262
PagI TCATGA 1 cut(s) 564
PciSI GCTCTTC 2 cut(s) 1188, 1809
PcsI WCGNNNNNNNCGW 2 cut(s) 40, 1724
PctI GAATGC 1 cut(s) 204
PdmI GAANNNNTTC 1 cut(s) 1803
PfeI GAWTC 3 cut(s) 361, 1151, 1708
PkrI GCNGC 4 cut(s) 223, 607, 1109, 1660
PleI GAGTC 2 cut(s) 941, 1377
PmaCI CACGTG 1 cut(s) 1103
PmlI CACGTG 1 cut(s) 1103
PpsI GAGTC 2 cut(s) 941, 1377
Ppu21I YACGTR 1 cut(s) 1103
PpuMI RGGWCCY 1 cut(s) 594
Psp5II RGGWCCY 1 cut(s) 594
PspCI CACGTG 1 cut(s) 1103
PspFI CCCAGC 1 cut(s) 590
PspN4I GGNNCC 4 cut(s) 595, 596, 637, 697
PspPI GGNCC 5 cut(s) 17, 492, 594, 635, 1330
PspPPI RGGWCCY 1 cut(s) 594
PsuI RGATCY 2 cut(s) 695, 1687
RsaI GTAC 6 cut(s) 46, 120, 418, 461, 1165, 1500
RsaNI GTAC 6 cut(s) 45, 119, 417, 460, 1164, 1499
RseI CAYNNNNRTG 1 cut(s) 540
SalI GTCGAC 1 cut(s) 1763
SapI GCTCTTC 2 cut(s) 1188, 1809
SaqAI TTAA 2 cut(s) 1563, 1794
SatI GCNGC 4 cut(s) 222, 606, 1108, 1659
Sau3AI GATC 9 cut(s) 92, 295, 695, 933, 997, 1303, 1318, 1606, 1687
Sau96I GGNCC 5 cut(s) 17, 492, 594, 635, 1330
ScaI AGTACT 2 cut(s) 461, 1500
SchI GAGTC 2 cut(s) 941, 1378
SfaNI GCATC 2 cut(s) 859, 1050
SinI GGWCC 4 cut(s) 17, 492, 594, 1330
SmiMI CAYNNNNRTG 1 cut(s) 540
SmlI CTYRAG 1 cut(s) 1415
SmoI CTYRAG 1 cut(s) 1415
Sse9I AATT 8 cut(s) 76, 344, 473, 793, 900, 1175, 1340, 1430
SsiI CCGC 6 cut(s) 222, 944, 1108, 1313, 1490, 1659
SspMI CTAG 8 cut(s) 8, 29, 632, 1038, 1172, 1346, 1355, 1467
StyI CCWWGG 3 cut(s) 264, 1077, 1768
TaaI ACNGT 7 cut(s) 44, 290, 421, 820, 1163, 1423, 1456
TaiI ACGT 3 cut(s) 604, 730, 1105
TaqI TCGA 5 cut(s) 292, 751, 932, 1156, 1764
TaqII GACCGA 4 cut(s) 787, 1475, 1708, 1797
TasI AATT 8 cut(s) 76, 344, 473, 793, 900, 1175, 1340, 1430
TatI WGTACW 3 cut(s) 459, 1163, 1498
TauI GCSGC 3 cut(s) 224, 1110, 1661
TfiI GAWTC 3 cut(s) 361, 1151, 1708
Tru1I TTAA 2 cut(s) 1563, 1794
Tru9I TTAA 2 cut(s) 1563, 1794
TscAI CASTG 5 cut(s) 426, 672, 823, 1461, 1828
TseFI GTSAC 5 cut(s) 799, 923, 1456, 1648, 1809
TseI GCWGC 1 cut(s) 605
Tsp45I GTSAC 5 cut(s) 799, 923, 1456, 1648, 1809
TspDTI ATGAA 9 cut(s) 89, 122, 197, 509, 581, 657, 1413, 1535, 1554
TspGWI ACGGA 1 cut(s) 827
TspRI CASTG 5 cut(s) 426, 672, 823, 1461, 1828
VpaK11BI GGWCC 4 cut(s) 17, 492, 594, 1330
XapI RAATTY 2 cut(s) 76, 793
XbaI TCTAGA 1 cut(s) 1354
XceI RCATGY 1 cut(s) 262
XmiI GTMKAC 2 cut(s) 746, 1764
XmnI GAANNNNTTC 1 cut(s) 1803
XspI CTAG 8 cut(s) 8, 29, 632, 1038, 1172, 1346, 1355, 1467
ZrmI AGTACT 2 cut(s) 461, 1500
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.