Rroxscaffold_1G00060420

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000063
Physical Location & Seq
Reverse (-)
82648622 .. 82652931
4310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00060420.1

Sequence Viewer

Length: 2352 bp
ATGCTTCCTTATTACGGTGATCACTGGAAGAAGGCCAACATCTACGACCCAATAATGCTCTCCGCCAGGCGCTTCTTCCCCGACAAGGCTCTCCTCGGCGCTGCGTTTTGCTTTTGGAACTCATCATCCAACACTATGGACTTGCCTCTCGGGATGATGAGTGTGAGTCTTCTTGACGTTGCTGCTATTGCTGGGTTTAGGCCTCATGGCACCACTTACGACTGCACTGCTCAGTTGAAGCCCAAAACCAAGTTTAGGTGTGGTCGGCACTTCGAATATGGAGGTTGGATAGACTATCATAATAGTGACAAAAGCAACAAAGTTGTCGATCAAGAGCACATAGCGTTCCTCCTCTACTGGCTCTGTAGGTATGTCTTCTGTGTACCTTCAGGGATTAGTAAAGAGTGGTCTCATTTGGCAGAAGTTTTGCATCGAAGAACTGATGTGGCCTTAGGTGAGTTAGTGCTAGCCTCACTGTACAGGGGTTTGCAGAAAATCACTGTCAACCCATTTGATGGTAAAGCTGAGGGCCCACTTTGGCTGTTCCAAATGTGGTTACAGATTTACTTCCCAGACCTAGGCCCGGTTAGTGCATTTCCTGCCGATGAGGTTATGGGGGTGAGGTTGACAGACCAAGTCCCAAAACCACACTCCCCTCGTGATTGCTTTGCAACGTTGTGGAGTTTGAAATCAAACCCATGTTGGACGCACACCTTGACGAGAAGGTATCCCGGTTTCCTAAGGAATGGGTTCATAGATGGTCCAACCTCTGATGGTGCCTTAGATGAGGAAATACAAGCTGTGCTAACGAGTGTGGTGGTGCAAAGAGATCTGCTGTATGGAGGGATGAAAAATGGTAGACATTATGGAGTCCAGGCCGAATTTTACGGCCCGAACCATTTCAGTAGGCAGTTTGGTTGTATACAAGGAATTCCTTACTCTGGTCATAAAAGCGTTAATTGTTATACCTTATGGAGGGATGTACTAAAAGATGCTGCGGAAATCAGAGGCTTTGACAAATGGTGGCATAGTCAAACCAAAGATCGATTTTCGGTAGAACATGATGGGCGCTTTGCTATCTTATATATGCATTGTCCATTCCGGGATGGCCATCATCTAGAAGTTCCAGGCTTTCCCCCTGCTGATGGAGAAAGGGAAGAAGGTGAAGAGGGAGAAGCTAAAGTTGAAAGCCCTCTCCCTACCGACAAGAATCGAAAGAGGAAAGGCAACACAAATGCTCCAAAATCAGCTAGGCAGAAGACTACTCAAGTCACAGCTGTAGTATCTGGAATGAAGACAAATGGATCCAATAATGAAGAAGCAGAGGAAATTGATGGCCGTCATACCCTGAATGTTGATGGCTTGTCTGGAGCTCAAATTAAGGAATCCACTGTTGACCACCAAAATGCTGTTGTTAAGCCAAAACATATAACTTCAACTTCTAAAAATACCTTCAGATCTATGAAAAAGCTGAGGTCAGAATTTTCAAGTGACACCTCCAAAAATGCTGATAACATCGGAACTGAAGAACCTGAGCAGACTGAAGGGCCATTGATGGGAACTGGGGAGTTAGGAAGTAAACAAATGTATAGCGATGCTGCTGCCTTTGAAACTGCCCCCTTACTTACCAGTATGCACCCAGCTCAAAGTGAGCCAACCACGCCAGTTCAAGGATTACTAGATGGCAATGTGAGGACCCTCTCAAGAGAGGAAAAGTTGAAAAAGTTAGAAAATATTGAAAGTAGTGTGGCAAACTCATCTGTCGAAGCTTCCAAAGCTGAAGATGATCATGCTTATTCCGTTATTGAGGACGTGGTGGTTCGAGGCACGAGGGCGATTTTTCATGATGGCCAGGTCCCAGCAGACCTAAGAGAGGCATTAAATTATGTTCGAGGCAGAAGTCCATTAAGCCATGTTTTGATTGATGCTCTTGATGAGTATTTTAAGGAGCTTAATTGCGCCCAGATGAAAATGACTATGAATTTCATTAAGTTGACGTTGCTCGAAGATGAAGTTCGACGAGATAAGGACATCAGGGATAAGCTGGATAAAGCATCAAATGAAGGAAAGCAGTTGCAAATTGCAGCAATACAAAGAGCGGAGGAAATGTCTCAACTTGATGAAGAAATAAAGGTACTTAAAGCAGAGAGAGAGGAGGAAGAGCGTATGATAGCACTAGATAAAAATATTATTGATGAGAAATTTGCACTCATTAGTTCCTTTGAACTTGAAATGTCCAAGCTCCCCGATCGTGGTTCTGAAATGATTGCCTGCCAAATAAAGGATAAACTTTACGACATGAGGAGTGACTCTATACGTCGGGCCATAAACGAGCTACTTTCTAATATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

783

Amino Acids

88.35

Weight (kDa)

5.89

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 14 - 315 5.6e-28 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 209, 776
AccB7I CCANNNNNTGG 1 cut(s) 515
AccBSI CCGCTC 1 cut(s) 2099
AccI GTMKAC 2 cut(s) 859, 922
AciI CCGC 3 cut(s) 63, 998, 2099
AclI AACGTT 1 cut(s) 674
AclWI GGATC 2 cut(s) 1299, 1312
AcoI YGGCCR 3 cut(s) 1108, 1336, 1849
AcsI RAATTY 5 cut(s) 881, 930, 1481, 1981, 2201
AcuI CTGAAG 5 cut(s) 372, 1438, 1545, 1563, 1800
AfaI GTAC 4 cut(s) 384, 479, 984, 2136
AjiI CACGTC 1 cut(s) 1813
AjnI CCWGG 4 cut(s) 65, 873, 1126, 1851
AloI GAACNNNNNNTCC 2 cut(s) 110, 142
Alw21I GWGCWC 2 cut(s) 339, 1375
Alw26I GTCTC 2 cut(s) 414, 2115
AlwI GGATC 2 cut(s) 1299, 1312
Ama87I CYCGRG 1 cut(s) 149
ApaI GGGCCC 1 cut(s) 533
ApeKI GCWGC 6 cut(s) 101, 182, 995, 1598, 1601, 2084
ApoI RAATTY 5 cut(s) 881, 930, 1481, 1981, 2201
Asp700I GAANNNNTTC 2 cut(s) 749, 899
AspA2I CCTAGG 1 cut(s) 577
AspLEI GCGC 4 cut(s) 72, 101, 1071, 1961
AspS9I GGNCC 9 cut(s) 529, 530, 581, 761, 890, 1547, 1695, 1855, 2322
AsuC2I CCSGG 3 cut(s) 584, 732, 1103
AsuHPI GGTGA 4 cut(s) 29, 467, 631, 1175
AsuII TTCGAA 1 cut(s) 273
AsuNHI GCTAGC 1 cut(s) 466
AvaI CYCGRG 1 cut(s) 149
AvaII GGWCC 3 cut(s) 761, 1695, 1855
AvrII CCTAGG 1 cut(s) 577
AxyI CCTNAGG 2 cut(s) 451, 740
BaeGI GKGCMC 1 cut(s) 533
BalI TGGCCA 2 cut(s) 1110, 1851
BamHI GGATCC 1 cut(s) 1304
BanI GGYRCC 2 cut(s) 209, 776
BanII GRGCYC 2 cut(s) 533, 1375
BauI CACGAG 2 cut(s) 657, 1828
BbsI GAAGAC 4 cut(s) 161, 367, 1265, 1301
Bbv12I GWGCWC 2 cut(s) 339, 1375
BbvCI CCTCAGC 2 cut(s) 525, 1472
BbvI GCAGC 6 cut(s) 88, 169, 982, 1585, 1588, 2096
BceAI ACGGC 2 cut(s) 904, 1323
BcgI CGANNNNNNTGC 4 cut(s) 209, 243, 1583, 1617
BciT130I CCWGG 4 cut(s) 67, 875, 1128, 1853
BciVI GTATCC 1 cut(s) 738
BclI TGATCA 2 cut(s) 19, 1786
BcnI CCSGG 3 cut(s) 584, 732, 1103
BcoDI GTCTC 2 cut(s) 414, 2115
BfaI CTAG 6 cut(s) 467, 578, 1118, 1251, 1679, 2177
BfmI CTRYAG 2 cut(s) 364, 1278
BfoI RGCGCY 3 cut(s) 73, 102, 1072
BfuI GTATCC 1 cut(s) 738
BglII AGATCT 2 cut(s) 829, 1457
BisI GCNGC 6 cut(s) 102, 183, 996, 1599, 1602, 2085
BlnI CCTAGG 1 cut(s) 577
BlsI GCNGC 6 cut(s) 103, 184, 997, 1600, 1603, 2086
Bme1390I CCNGG 7 cut(s) 67, 584, 732, 875, 1103, 1128, 1853
Bme18I GGWCC 3 cut(s) 761, 1695, 1855
BmeT110I CYCGRG 1 cut(s) 149
BmgBI CACGTC 1 cut(s) 1813
BmgT120I GGNCC 9 cut(s) 529, 530, 581, 761, 890, 1547, 1695, 1855, 2322
BmiI GGNNCC 6 cut(s) 211, 531, 778, 1306, 1697, 1857
BmrFI CCNGG 7 cut(s) 67, 584, 732, 875, 1103, 1128, 1853
BmrI ACTGGG 1 cut(s) 1572
BmsI GCATC 5 cut(s) 439, 982, 1585, 1915, 2063
BmtI GCTAGC 1 cut(s) 470
BmuI ACTGGG 1 cut(s) 1572
BpiI GAAGAC 4 cut(s) 161, 367, 1265, 1301
BpmI CTGGAG 1 cut(s) 1389
Bpu10I CCTNAGC 3 cut(s) 525, 1472, 1533
Bpu14I TTCGAA 1 cut(s) 273
BpuEI CTTGAG 2 cut(s) 1251, 1687
BpuMI CCSGG 3 cut(s) 584, 732, 1103
Bsa29I ATCGAT 1 cut(s) 1045
BsaBI GATNNNNATC 1 cut(s) 1110
BsaI GGTCTC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 94, 577
BsaXI ACNNNNNCTCC 4 cut(s) 1222, 1252, 2093, 2123
Bse1I ACTGG 5 cut(s) 29, 362, 1567, 1629, 1664
Bse21I CCTNAGG 2 cut(s) 451, 740
Bse3DI GCAATG 1 cut(s) 1693
Bse8I GATNNNNATC 1 cut(s) 1110
BseBI CCWGG 4 cut(s) 67, 875, 1128, 1853
BseCI ATCGAT 1 cut(s) 1045
BseDI CCNNGG 2 cut(s) 94, 577
BseGI GGATG 5 cut(s) 125, 159, 852, 985, 1111
BseJI GATNNNNATC 1 cut(s) 1110
BseMI GCAATG 1 cut(s) 1693
BseMII CTCAG 4 cut(s) 245, 516, 1463, 1524
BseNI ACTGG 5 cut(s) 29, 362, 1567, 1629, 1664
BseRI GAGGAG 4 cut(s) 83, 341, 2168, 2317
BseSI GKGCMC 1 cut(s) 533
BseXI GCAGC 6 cut(s) 88, 169, 982, 1585, 1588, 2096
BseYI CCCAGC 3 cut(s) 191, 1639, 1858
BsgI GTGCAG 1 cut(s) 208
Bsh1285I CGRYCG 1 cut(s) 2251
BshNI GGYRCC 2 cut(s) 209, 776
BshVI ATCGAT 1 cut(s) 1045
BsiEI CGRYCG 1 cut(s) 2251
BsiHKAI GWGCWC 2 cut(s) 339, 1375
BsiHKCI CYCGRG 1 cut(s) 149
BsiSI CCGG 3 cut(s) 584, 732, 1102
BslFI GGGAC 2 cut(s) 623, 1841
BsmAI GTCTC 2 cut(s) 414, 2115
BsmFI GGGAC 2 cut(s) 623, 1841
Bso31I GGTCTC 1 cut(s) 414
BsoBI CYCGRG 1 cut(s) 149
Bsp119I TTCGAA 1 cut(s) 273
Bsp120I GGGCCC 1 cut(s) 529
Bsp1286I GDGCHC 3 cut(s) 339, 533, 1375
Bsp1407I TGTACA 1 cut(s) 477
Bsp143I GATC 8 cut(s) 19, 328, 829, 1042, 1304, 1457, 1786, 2248
BspACI CCGC 3 cut(s) 63, 998, 2099
BspCNI CTCAG 4 cut(s) 244, 517, 1464, 1525
BspDI ATCGAT 1 cut(s) 1045
BspHI TCATGA 1 cut(s) 1843
BspLI GGNNCC 6 cut(s) 211, 531, 778, 1306, 1697, 1857
BspOI GCTAGC 1 cut(s) 470
BspPI GGATC 2 cut(s) 1299, 1312
BspQI GCTCTTC 1 cut(s) 2154
BspT104I TTCGAA 1 cut(s) 273
BspT107I GGYRCC 2 cut(s) 209, 776
BspTNI GGTCTC 1 cut(s) 414
BsrBI CCGCTC 1 cut(s) 2099
BsrDI GCAATG 1 cut(s) 1693
BsrGI TGTACA 1 cut(s) 477
BsrI ACTGG 5 cut(s) 29, 362, 1567, 1629, 1664
BssECI CCNNGG 2 cut(s) 94, 577
BssMI GATC 8 cut(s) 19, 328, 829, 1042, 1304, 1457, 1786, 2248
BssNAI GTATAC 1 cut(s) 923
BssSI CACGAG 2 cut(s) 657, 1828
BssT1I CCWWGG 1 cut(s) 577
Bst1107I GTATAC 1 cut(s) 923
Bst2BI CACGAG 2 cut(s) 657, 1828
Bst2UI CCWGG 4 cut(s) 67, 875, 1128, 1853
Bst4CI ACNGT 4 cut(s) 17, 477, 502, 1393
Bst6I CTCTTC 2 cut(s) 1161, 2154
BstAPI GCANNNNNTGC 1 cut(s) 599
BstAUI TGTACA 1 cut(s) 477
BstBI TTCGAA 1 cut(s) 273
BstC8I GCNNGC 2 cut(s) 468, 2272
BstDEI CTNAG 8 cut(s) 231, 451, 525, 740, 781, 1472, 1533, 1868
BstENI CCTNNNNNAGG 2 cut(s) 973, 1871
BstF5I GGATG 5 cut(s) 125, 159, 852, 985, 1111
BstH2I RGCGCY 3 cut(s) 73, 102, 1072
BstHHI GCGC 4 cut(s) 72, 101, 1071, 1961
BstKTI GATC 8 cut(s) 22, 331, 832, 1045, 1307, 1460, 1789, 2251
BstMAI GTCTC 2 cut(s) 414, 2115
BstMBI GATC 8 cut(s) 19, 328, 829, 1042, 1304, 1457, 1786, 2248
BstMCI CGRYCG 1 cut(s) 2251
BstMWI GCNNNNNNNGC 4 cut(s) 188, 599, 1660, 1775
BstNI CCWGG 4 cut(s) 67, 875, 1128, 1853
BstSCI CCNGG 7 cut(s) 65, 582, 730, 873, 1101, 1126, 1851
BstSFI CTRYAG 2 cut(s) 364, 1278
BstSLI GKGCMC 1 cut(s) 533
BstV1I GCAGC 6 cut(s) 88, 169, 982, 1585, 1588, 2096
BstV2I GAAGAC 4 cut(s) 161, 367, 1265, 1301
BstX2I RGATCY 3 cut(s) 829, 1304, 1457
BstXI CCANNNNNNTGG 1 cut(s) 136
BstYI RGATCY 3 cut(s) 829, 1304, 1457
BstZ17I GTATAC 1 cut(s) 923
Bsu15I ATCGAT 1 cut(s) 1045
Bsu36I CCTNAGG 2 cut(s) 451, 740
BsuI GTATCC 1 cut(s) 738
BsuTUI ATCGAT 1 cut(s) 1045
BtgZI GCGATG 1 cut(s) 1608
BtrI CACGTC 1 cut(s) 1813
BtsCI GGATG 5 cut(s) 125, 159, 852, 985, 1111
BtsI GCAGTG 1 cut(s) 225
BtsIMutI CAGTG 5 cut(s) 22, 225, 473, 498, 1389
Cac8I GCNNGC 2 cut(s) 468, 2272
CciI TCATGA 1 cut(s) 1843
CfoI GCGC 4 cut(s) 72, 101, 1071, 1961
Cfr13I GGNCC 9 cut(s) 529, 530, 581, 761, 890, 1547, 1695, 1855, 2322
ClaI ATCGAT 1 cut(s) 1045
CseI GACGC 1 cut(s) 715
Csp6I GTAC 4 cut(s) 383, 478, 983, 2135
CviAII CATG 7 cut(s) 206, 699, 1061, 1790, 1844, 1913, 2299
CviQI GTAC 4 cut(s) 383, 478, 983, 2135
DdeI CTNAG 8 cut(s) 231, 451, 525, 740, 781, 1472, 1533, 1868
DpnI GATC 8 cut(s) 21, 330, 831, 1044, 1306, 1459, 1788, 2250
DpnII GATC 8 cut(s) 19, 328, 829, 1042, 1304, 1457, 1786, 2248
EaeI YGGCCR 3 cut(s) 1108, 1336, 1849
Eam1104I CTCTTC 2 cut(s) 1161, 2154
EarI CTCTTC 2 cut(s) 1161, 2154
EciI GGCGGA 1 cut(s) 52
Ecl136II GAGCTC 1 cut(s) 1373
Eco130I CCWWGG 1 cut(s) 577
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 2 cut(s) 533, 1375
Eco31I GGTCTC 1 cut(s) 414
Eco47I GGWCC 3 cut(s) 761, 1695, 1855
Eco53kI GAGCTC 1 cut(s) 1373
Eco57I CTGAAG 5 cut(s) 372, 1438, 1545, 1563, 1800
Eco81I CCTNAGG 2 cut(s) 451, 740
Eco88I CYCGRG 1 cut(s) 149
EcoICRI GAGCTC 1 cut(s) 1373
EcoNI CCTNNNNNAGG 2 cut(s) 973, 1871
EcoO109I RGGNCCY 3 cut(s) 529, 1695, 1855
EcoRI GAATTC 1 cut(s) 930
EcoRII CCWGG 4 cut(s) 65, 873, 1126, 1851
EcoT14I CCWWGG 1 cut(s) 577
EcoT22I ATGCAT 1 cut(s) 1092
EcoT38I GRGCYC 2 cut(s) 533, 1375
ErhI CCWWGG 1 cut(s) 577
FaeI CATG 7 cut(s) 209, 702, 1064, 1793, 1847, 1916, 2302
FaqI GGGAC 2 cut(s) 623, 1841
FatI CATG 7 cut(s) 205, 698, 1060, 1789, 1843, 1912, 2298
FbaI TGATCA 2 cut(s) 19, 1786
FblI GTMKAC 2 cut(s) 859, 922
Fnu4HI GCNGC 6 cut(s) 102, 183, 996, 1599, 1602, 2085
FokI GGATG 5 cut(s) 112, 166, 859, 992, 1118
FriOI GRGCYC 2 cut(s) 533, 1375
Fsp4HI GCNGC 6 cut(s) 102, 183, 996, 1599, 1602, 2085
FspBI CTAG 6 cut(s) 467, 578, 1118, 1251, 1679, 2177
GlaI GCGC 4 cut(s) 71, 100, 1070, 1960
GluI GCNGC 6 cut(s) 102, 183, 996, 1599, 1602, 2085
GsaI CCCAGC 3 cut(s) 195, 1643, 1862
GsuI CTGGAG 1 cut(s) 1389
HaeII RGCGCY 3 cut(s) 73, 102, 1072
HapII CCGG 3 cut(s) 584, 732, 1102
HgaI GACGC 1 cut(s) 715
HhaI GCGC 4 cut(s) 72, 101, 1071, 1961
Hin1II CATG 7 cut(s) 209, 702, 1064, 1793, 1847, 1916, 2302
Hin6I GCGC 4 cut(s) 70, 99, 1069, 1959
HinP1I GCGC 4 cut(s) 70, 99, 1069, 1959
HincII GTYRAC 4 cut(s) 505, 627, 1396, 1995
HindII GTYRAC 4 cut(s) 505, 627, 1396, 1995
HindIII AAGCTT 1 cut(s) 1767
HinfI GANTC 5 cut(s) 166, 870, 1210, 1385, 2309
HpaII CCGG 3 cut(s) 584, 732, 1102
HphI GGTGA 4 cut(s) 29, 467, 631, 1175
Hpy166II GTNNAC 8 cut(s) 383, 505, 627, 860, 923, 1396, 1580, 1995
Hpy188I TCNGA 6 cut(s) 772, 1007, 1457, 1480, 1520, 2260
Hpy8I GTNNAC 8 cut(s) 383, 505, 627, 860, 923, 1396, 1580, 1995
Hpy99I CGWCG 2 cut(s) 2022, 2322
HpyAV CCTTC 7 cut(s) 25, 396, 717, 1154, 1462, 1538, 2057
HpyCH4III ACNGT 4 cut(s) 17, 477, 502, 1393
HpyCH4IV ACGT 5 cut(s) 177, 674, 1812, 1997, 2317
HpyF10VI GCNNNNNNNGC 4 cut(s) 188, 599, 1660, 1775
HpyF3I CTNAG 8 cut(s) 231, 451, 525, 740, 781, 1472, 1533, 1868
HpySE526I ACGT 5 cut(s) 177, 674, 1812, 1997, 2317
Hsp92II CATG 7 cut(s) 209, 702, 1064, 1793, 1847, 1916, 2302
HspAI GCGC 4 cut(s) 70, 99, 1069, 1959
Ksp22I TGATCA 2 cut(s) 19, 1786
Kzo9I GATC 8 cut(s) 19, 328, 829, 1042, 1304, 1457, 1786, 2248
LguI GCTCTTC 1 cut(s) 2154
LmnI GCTCC 4 cut(s) 1243, 1370, 1948, 2247
Lsp1109I GCAGC 6 cut(s) 88, 169, 982, 1585, 1588, 2096
LweI GCATC 5 cut(s) 439, 982, 1585, 1915, 2063
MaeI CTAG 6 cut(s) 467, 578, 1118, 1251, 1679, 2177
MaeII ACGT 5 cut(s) 177, 674, 1812, 1997, 2317
MaeIII GTNAC 5 cut(s) 305, 555, 1270, 1490, 2306
MalI GATC 8 cut(s) 21, 330, 831, 1044, 1306, 1459, 1788, 2250
MbiI CCGCTC 1 cut(s) 2099
MboI GATC 8 cut(s) 19, 328, 829, 1042, 1304, 1457, 1786, 2248
MflI RGATCY 3 cut(s) 829, 1304, 1457
MhlI GDGCHC 3 cut(s) 339, 533, 1375
MlsI TGGCCA 2 cut(s) 1110, 1851
MluNI TGGCCA 2 cut(s) 1110, 1851
MlyI GAGTC 3 cut(s) 175, 879, 2303
MmeI TCCRAC 4 cut(s) 153, 266, 683, 788
Mox20I TGGCCA 2 cut(s) 1110, 1851
Mph1103I ATGCAT 1 cut(s) 1092
MroXI GAANNNNTTC 2 cut(s) 749, 899
MscI TGGCCA 2 cut(s) 1110, 1851
MseI TTAA 9 cut(s) 957, 1380, 1416, 1880, 1907, 1944, 1953, 1989, 2139
MslI CAYNNNNRTG 2 cut(s) 303, 1404
Msp20I TGGCCA 2 cut(s) 1110, 1851
MspA1I CMGCKG 1 cut(s) 1277
MspI CCGG 3 cut(s) 584, 732, 1102
MspR9I CCNGG 7 cut(s) 67, 584, 732, 875, 1103, 1128, 1853
MvaI CCWGG 4 cut(s) 67, 875, 1128, 1853
MwoI GCNNNNNNNGC 4 cut(s) 188, 599, 1660, 1775
NciI CCSGG 3 cut(s) 584, 732, 1103
NdeII GATC 8 cut(s) 19, 328, 829, 1042, 1304, 1457, 1786, 2248
NheI GCTAGC 1 cut(s) 466
NlaIII CATG 7 cut(s) 209, 702, 1064, 1793, 1847, 1916, 2302
NlaIV GGNNCC 6 cut(s) 211, 531, 778, 1306, 1697, 1857
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 4 cut(s) 305, 1270, 1490, 2306
NsiI ATGCAT 1 cut(s) 1092
NspV TTCGAA 1 cut(s) 273
PagI TCATGA 1 cut(s) 1843
PceI AGGCCT 1 cut(s) 202
PciSI GCTCTTC 1 cut(s) 2154
PdmI GAANNNNTTC 2 cut(s) 749, 899
PfeI GAWTC 2 cut(s) 1210, 1385
PflFI GACNNNGTC 1 cut(s) 635
PflMI CCANNNNNTGG 1 cut(s) 515
PfoI TCCNGGA 1 cut(s) 1101
PkrI GCNGC 6 cut(s) 103, 184, 997, 1600, 1603, 2086
Ple19I CGATCG 1 cut(s) 2251
PleI GAGTC 3 cut(s) 174, 878, 2303
PpsI GAGTC 3 cut(s) 174, 878, 2303
PpuMI RGGWCCY 2 cut(s) 1695, 1855
Psp124BI GAGCTC 1 cut(s) 1375
Psp1406I AACGTT 1 cut(s) 674
Psp5II RGGWCCY 2 cut(s) 1695, 1855
Psp6I CCWGG 4 cut(s) 65, 873, 1126, 1851
PspFI CCCAGC 3 cut(s) 191, 1639, 1858
PspGI CCWGG 4 cut(s) 65, 873, 1126, 1851
PspN4I GGNNCC 6 cut(s) 211, 531, 778, 1306, 1697, 1857
PspOMI GGGCCC 1 cut(s) 529
PspPI GGNCC 9 cut(s) 529, 530, 581, 761, 890, 1547, 1695, 1855, 2322
PspPPI RGGWCCY 2 cut(s) 1695, 1855
PsuI RGATCY 3 cut(s) 829, 1304, 1457
PsyI GACNNNGTC 1 cut(s) 635
PvuI CGATCG 1 cut(s) 2251
PvuII CAGCTG 1 cut(s) 1277
RsaI GTAC 4 cut(s) 384, 479, 984, 2136
RsaNI GTAC 4 cut(s) 383, 478, 983, 2135
RseI CAYNNNNRTG 2 cut(s) 303, 1404
SacI GAGCTC 1 cut(s) 1375
SapI GCTCTTC 1 cut(s) 2154
SaqAI TTAA 9 cut(s) 957, 1380, 1416, 1880, 1907, 1944, 1953, 1989, 2139
SatI GCNGC 6 cut(s) 102, 183, 996, 1599, 1602, 2085
Sau3AI GATC 8 cut(s) 19, 328, 829, 1042, 1304, 1457, 1786, 2248
Sau96I GGNCC 9 cut(s) 529, 530, 581, 761, 890, 1547, 1695, 1855, 2322
SchI GAGTC 3 cut(s) 175, 879, 2303
ScrFI CCNGG 7 cut(s) 67, 584, 732, 875, 1103, 1128, 1853
SduI GDGCHC 3 cut(s) 339, 533, 1375
SfaNI GCATC 5 cut(s) 439, 982, 1585, 1915, 2063
SfcI CTRYAG 2 cut(s) 364, 1278
SfuI TTCGAA 1 cut(s) 273
SinI GGWCC 3 cut(s) 761, 1695, 1855
SmiMI CAYNNNNRTG 2 cut(s) 303, 1404
SmlI CTYRAG 2 cut(s) 1266, 1702
SmoI CTYRAG 2 cut(s) 1266, 1702
SseBI AGGCCT 1 cut(s) 202
SsiI CCGC 3 cut(s) 63, 998, 2099
SspI AATATT 2 cut(s) 1735, 2188
SspMI CTAG 6 cut(s) 467, 578, 1118, 1251, 1679, 2177
SstI GAGCTC 1 cut(s) 1375
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 7 cut(s) 65, 582, 730, 873, 1101, 1126, 1851
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 4 cut(s) 17, 477, 502, 1393
TaiI ACGT 5 cut(s) 180, 677, 1815, 2000, 2320
TatI WGTACW 2 cut(s) 477, 982
TfiI GAWTC 2 cut(s) 1210, 1385
Tru1I TTAA 9 cut(s) 957, 1380, 1416, 1880, 1907, 1944, 1953, 1989, 2139
Tru9I TTAA 9 cut(s) 957, 1380, 1416, 1880, 1907, 1944, 1953, 1989, 2139
TscAI CASTG 5 cut(s) 29, 232, 480, 505, 1396
TseFI GTSAC 4 cut(s) 305, 1270, 1490, 2306
TseI GCWGC 6 cut(s) 101, 182, 995, 1598, 1601, 2084
Tsp45I GTSAC 4 cut(s) 305, 1270, 1490, 2306
TspGWI ACGGA 1 cut(s) 1789
TspRI CASTG 5 cut(s) 29, 232, 480, 505, 1396
Tth111I GACNNNGTC 1 cut(s) 635
Van91I CCANNNNNTGG 1 cut(s) 515
VpaK11BI GGWCC 3 cut(s) 761, 1695, 1855
XagI CCTNNNNNAGG 2 cut(s) 973, 1871
XapI RAATTY 5 cut(s) 881, 930, 1481, 1981, 2201
XbaI TCTAGA 1 cut(s) 1117
XmaJI CCTAGG 1 cut(s) 577
XmiI GTMKAC 2 cut(s) 859, 922
XmnI GAANNNNTTC 2 cut(s) 749, 899
XspI CTAG 6 cut(s) 467, 578, 1118, 1251, 1679, 2177
Zsp2I ATGCAT 1 cut(s) 1092
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.