RLG00000012764

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000063
Physical Location & Seq
Forward (+)
22159002 .. 22161970
2969 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012764

Sequence Viewer

Length: 1449 bp
ATGGGAAGCCTTTTTGAAGAAGAAGCCATGGAATTCTCAGAAAAATACGACAAAGTTTTGTCTTATGTACTTGAAAAAATGCGAGGTGGAGAGATTCACAAATTGGCAGGGCAAACTCCACCAAGCCTTTACTTAGGCCCTCACTTTCCTGATGTCTCACGACGTTACCAAGAGCGTCTCAACCGTTTCAAGATGGAACCTTACCAAACGAGTTGCACGGCTACACCTCTTTTCGTCAATTGGTGGTCAGATTACTCAAAGAAATTCATTGGCCCAGATTTAAGGGAACTGTTCACACAGCGGATTGTCCAAGAAGTTGATGATATCTTGAAAAGCCAAGATGGGCGGAAAAGAAAGTGGACTACTACTGATGGTCGCAAGGAAATACCAGTTTTAGCACAACAGATTTCATCATTTTCTGAAGAATATTCTCTTGCCGGCTCGGATAACAACAGCGGCCATACTATTGAATTAACTATTGATGATGAGGAGGCTGAAACTTTTGTTAATGGTGAGGACCACGCTTTAATTGATGAATCAGTTCATTCTTTCCCTGACGATCGTGAGAGAGAAACGATAGCCATTCAACAAAATACTTTTAATCAAGCAACTTCTTCTACACCTTTGCTGTCTGCAAAGGCCTTAGCCTTCTTGGACGAGCTTGCTATGCCAACAAAGATGACACCAAAACAGATTGGCAATGATCGGGAGAAGACAGCGGCCGAGTTTGTAACTGCATATTGCCGCAAACCCCTTTTGACCGTGGTTGACAACAATCTTTATGACCGCTTCAAACAAGAAATAAAATTCTTGATTTCGGTCAATCATTTTAGTCCAGACCGCATGCAACAAATTGAAGATCATTTCAAAGTTACAGATGTTAGTGTAATTGCCTATACATATGCTTTGGAAAAATGGGACACTGGCCGCGCTCTAGAAAAGAAATATGGACCTATTGTGGAGCGTCAATCTTCAAGGCCCGTGAAACTCACCCAACTCCGTGATGAGTTCAACAAAGATGTGCAAGAGTTAGCTGAGCTAGAGAGTCGAGTGAATGTGATCCGGGAGCGCATGTCCACGGCTTCAAACATTATAAACCAAGAGTATAAAGAACATCATGAAGAGCTCCGCGCTCTAGAAAAGAAATATGGACCTATTGTGGAGCGTCAATCTTCAAGGGTCGCGAAACTCACCCAACTCTGTGATGAGTTCAACAAAGATGTGCAAGAGTTAGCTAAGCTAGAGAGTCGAGTGAATGTGATCCGGGAGCGCATGTCCACGGCTTCAAGCATTATAAACCAAGAGTATAAAGAACATCATGAAGAGCTCAAGTTGTTTTCCATACATGGTAGGGACACCCAAGCCTTTTTAGAAATCAAGCATGATCTTGATGAAGCAATGAAGAAGAATGACGCTGACTGGGCTGCGTGGGAGAGGATCTTGCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

483

Amino Acids

55.99

Weight (kDa)

5.34

Isoelectric Point (pI)

40.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 1094, 1295
AccII CGCG 3 cut(s) 930, 1131, 1184
AciI CCGC 9 cut(s) 301, 346, 456, 719, 745, 787, 841, 928, 1129
AclWI GGATC 3 cut(s) 1054, 1255, 1445
AcoI YGGCCR 3 cut(s) 457, 720, 925
AcsI RAATTY 3 cut(s) 32, 263, 806
AcuI CTGAAG 1 cut(s) 441
AfaI GTAC 1 cut(s) 69
AluBI AGCT 7 cut(s) 661, 1034, 1039, 1126, 1235, 1240, 1327
AluI AGCT 7 cut(s) 661, 1034, 1039, 1126, 1235, 1240, 1327
Alw21I GWGCWC 2 cut(s) 1128, 1329
Alw26I GTCTC 2 cut(s) 160, 182
AlwI GGATC 3 cut(s) 1054, 1255, 1445
AoxI GGCC 7 cut(s) 136, 271, 457, 639, 720, 925, 977
ApeKI GCWGC 1 cut(s) 1424
ApoI RAATTY 3 cut(s) 32, 263, 806
Asp700I GAANNNNTTC 1 cut(s) 540
AspLEI GCGC 4 cut(s) 932, 1071, 1133, 1272
AspS9I GGNCC 6 cut(s) 137, 272, 517, 950, 978, 1151
AsuC2I CCSGG 2 cut(s) 1064, 1265
AsuHPI GGTGA 3 cut(s) 524, 982, 1183
AvaII GGWCC 3 cut(s) 517, 950, 1151
BanII GRGCYC 2 cut(s) 1128, 1329
BbsI GAAGAC 1 cut(s) 719
Bbv12I GWGCWC 2 cut(s) 1128, 1329
BbvI GCAGC 1 cut(s) 1411
BccI CCATC 3 cut(s) 187, 335, 365
BceAI ACGGC 3 cut(s) 234, 1095, 1296
BcnI CCSGG 2 cut(s) 1064, 1265
BcoDI GTCTC 2 cut(s) 160, 182
BfaI CTAG 4 cut(s) 935, 1040, 1136, 1241
BisI GCNGC 5 cut(s) 457, 720, 745, 928, 1425
BlpI GCTNAGC 2 cut(s) 1035, 1236
BlsI GCNGC 5 cut(s) 458, 721, 746, 929, 1426
Bme1390I CCNGG 2 cut(s) 1064, 1265
Bme18I GGWCC 3 cut(s) 517, 950, 1151
BmgT120I GGNCC 6 cut(s) 137, 272, 517, 950, 978, 1151
BmiI GGNNCC 1 cut(s) 198
BmrFI CCNGG 2 cut(s) 1064, 1265
BmrI ACTGGG 1 cut(s) 1429
BmuI ACTGGG 1 cut(s) 1429
BpiI GAAGAC 1 cut(s) 719
Bpu10I CCTNAGC 1 cut(s) 643
Bpu1102I GCTNAGC 2 cut(s) 1035, 1236
BpuEI CTTGAG 1 cut(s) 1313
BpuMI CCSGG 2 cut(s) 1064, 1265
BsaJI CCNNGG 4 cut(s) 27, 762, 1077, 1278
BsaXI ACNNNNNCTCC 4 cut(s) 1058, 1088, 1259, 1289
Bse118I RCCGGY 1 cut(s) 437
Bse1I ACTGG 3 cut(s) 389, 928, 1424
Bse3DI GCAATG 2 cut(s) 706, 1404
BseDI CCNNGG 4 cut(s) 27, 762, 1077, 1278
BseMI GCAATG 2 cut(s) 706, 1404
BseMII CTCAG 2 cut(s) 51, 1026
BseNI ACTGG 3 cut(s) 389, 928, 1424
BseRI GAGGAG 1 cut(s) 503
BseX3I CGGCCG 1 cut(s) 720
BseXI GCAGC 1 cut(s) 1411
Bsh1236I CGCG 3 cut(s) 930, 1131, 1184
Bsh1285I CGRYCG 2 cut(s) 562, 723
BshFI GGCC 7 cut(s) 138, 273, 459, 641, 722, 927, 979
BsiEI CGRYCG 2 cut(s) 562, 723
BsiHKAI GWGCWC 2 cut(s) 1128, 1329
BsiSI CCGG 3 cut(s) 438, 1063, 1264
BslFI GGGAC 2 cut(s) 932, 1367
BsmAI GTCTC 2 cut(s) 160, 182
BsmBI CGTCTC 1 cut(s) 182
BsmFI GGGAC 2 cut(s) 932, 1367
BsnI GGCC 7 cut(s) 138, 273, 459, 641, 722, 927, 979
Bsp1286I GDGCHC 2 cut(s) 1128, 1329
Bsp143I GATC 7 cut(s) 559, 703, 859, 1059, 1260, 1384, 1437
Bsp1720I GCTNAGC 2 cut(s) 1035, 1236
Bsp19I CCATGG 1 cut(s) 27
Bsp68I TCGCGA 1 cut(s) 1184
BspACI CCGC 9 cut(s) 301, 346, 456, 719, 745, 787, 841, 928, 1129
BspANI GGCC 7 cut(s) 138, 273, 459, 641, 722, 927, 979
BspCNI CTCAG 2 cut(s) 50, 1027
BspFNI CGCG 3 cut(s) 930, 1131, 1184
BspHI TCATGA 2 cut(s) 1117, 1318
BspLI GGNNCC 1 cut(s) 198
BspPI GGATC 3 cut(s) 1054, 1255, 1445
BspQI GCTCTTC 2 cut(s) 1116, 1317
BsrDI GCAATG 2 cut(s) 706, 1404
BsrFI RCCGGY 1 cut(s) 437
BsrI ACTGG 3 cut(s) 389, 928, 1424
BssAI RCCGGY 1 cut(s) 437
BssECI CCNNGG 4 cut(s) 27, 762, 1077, 1278
BssMI GATC 7 cut(s) 559, 703, 859, 1059, 1260, 1384, 1437
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 3 cut(s) 185, 291, 763
Bst6I CTCTTC 2 cut(s) 1116, 1317
BstC8I GCNNGC 3 cut(s) 439, 663, 845
BstDEI CTNAG 5 cut(s) 37, 133, 643, 1035, 1236
BstDSI CCRYGG 4 cut(s) 27, 762, 1077, 1278
BstFNI CGCG 3 cut(s) 930, 1131, 1184
BstHHI GCGC 4 cut(s) 932, 1071, 1133, 1272
BstKTI GATC 7 cut(s) 562, 706, 862, 1062, 1263, 1387, 1440
BstMAI GTCTC 2 cut(s) 160, 182
BstMBI GATC 7 cut(s) 559, 703, 859, 1059, 1260, 1384, 1437
BstMCI CGRYCG 2 cut(s) 562, 723
BstMWI GCNNNNNNNGC 2 cut(s) 667, 1421
BstNSI RCATGY 3 cut(s) 847, 1075, 1276
BstSCI CCNGG 2 cut(s) 1062, 1263
BstUI CGCG 3 cut(s) 930, 1131, 1184
BstV1I GCAGC 1 cut(s) 1411
BstV2I GAAGAC 1 cut(s) 719
BstX2I RGATCY 1 cut(s) 1437
BstYI RGATCY 1 cut(s) 1437
BstZI CGGCCG 1 cut(s) 720
BsuRI GGCC 7 cut(s) 138, 273, 459, 641, 722, 927, 979
BtgI CCRYGG 4 cut(s) 27, 762, 1077, 1278
BtsIMutI CAGTG 1 cut(s) 921
BtuMI TCGCGA 1 cut(s) 1184
Cac8I GCNNGC 3 cut(s) 439, 663, 845
CciI TCATGA 2 cut(s) 1117, 1318
CfoI GCGC 4 cut(s) 932, 1071, 1133, 1272
Cfr10I RCCGGY 1 cut(s) 437
Cfr13I GGNCC 6 cut(s) 137, 272, 517, 950, 978, 1151
CseI GACGC 4 cut(s) 164, 953, 1154, 1421
Csp6I GTAC 1 cut(s) 68
CviAII CATG 8 cut(s) 28, 844, 1072, 1118, 1273, 1319, 1346, 1382
CviQI GTAC 1 cut(s) 68
DdeI CTNAG 5 cut(s) 37, 133, 643, 1035, 1236
DpnI GATC 7 cut(s) 561, 705, 861, 1061, 1262, 1386, 1439
DpnII GATC 7 cut(s) 559, 703, 859, 1059, 1260, 1384, 1437
EaeI YGGCCR 3 cut(s) 457, 720, 925
EagI CGGCCG 1 cut(s) 720
Eam1104I CTCTTC 2 cut(s) 1116, 1317
EarI CTCTTC 2 cut(s) 1116, 1317
EciI GGCGGA 1 cut(s) 361
Ecl136II GAGCTC 2 cut(s) 1126, 1327
EclXI CGGCCG 1 cut(s) 720
Eco130I CCWWGG 1 cut(s) 27
Eco147I AGGCCT 1 cut(s) 641
Eco24I GRGCYC 2 cut(s) 1128, 1329
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 3 cut(s) 517, 950, 1151
Eco52I CGGCCG 1 cut(s) 720
Eco53kI GAGCTC 2 cut(s) 1126, 1327
Eco57I CTGAAG 1 cut(s) 441
EcoICRI GAGCTC 2 cut(s) 1126, 1327
EcoO109I RGGNCCY 1 cut(s) 137
EcoRI GAATTC 1 cut(s) 32
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 1128, 1329
ErhI CCWWGG 1 cut(s) 27
Esp3I CGTCTC 1 cut(s) 182
FaeI CATG 8 cut(s) 31, 847, 1075, 1121, 1276, 1322, 1349, 1385
FaqI GGGAC 2 cut(s) 932, 1367
FatI CATG 8 cut(s) 27, 843, 1071, 1117, 1272, 1318, 1345, 1381
FauNDI CATATG 1 cut(s) 901
Fnu4HI GCNGC 5 cut(s) 457, 720, 745, 928, 1425
FriOI GRGCYC 2 cut(s) 1128, 1329
Fsp4HI GCNGC 5 cut(s) 457, 720, 745, 928, 1425
FspBI CTAG 4 cut(s) 935, 1040, 1136, 1241
GlaI GCGC 4 cut(s) 931, 1070, 1132, 1271
GluI GCNGC 5 cut(s) 457, 720, 745, 928, 1425
HaeIII GGCC 7 cut(s) 138, 273, 459, 641, 722, 927, 979
HapII CCGG 3 cut(s) 438, 1063, 1264
HgaI GACGC 4 cut(s) 164, 953, 1154, 1421
HhaI GCGC 4 cut(s) 932, 1071, 1133, 1272
Hin1II CATG 8 cut(s) 31, 847, 1075, 1121, 1276, 1322, 1349, 1385
Hin6I GCGC 4 cut(s) 930, 1069, 1131, 1270
HinP1I GCGC 4 cut(s) 930, 1069, 1131, 1270
HincII GTYRAC 1 cut(s) 769
HindII GTYRAC 1 cut(s) 769
HinfI GANTC 4 cut(s) 94, 536, 1045, 1246
HpaII CCGG 3 cut(s) 438, 1063, 1264
HphI GGTGA 3 cut(s) 524, 982, 1183
Hpy166II GTNNAC 5 cut(s) 294, 360, 769, 1077, 1278
Hpy188I TCNGA 4 cut(s) 40, 250, 421, 445
Hpy8I GTNNAC 5 cut(s) 294, 360, 769, 1077, 1278
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 658
HpyCH4III ACNGT 3 cut(s) 185, 291, 763
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 6 cut(s) 216, 635, 737, 847, 1024, 1225
HpyF10VI GCNNNNNNNGC 2 cut(s) 667, 1421
HpyF3I CTNAG 5 cut(s) 37, 133, 643, 1035, 1236
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 8 cut(s) 31, 847, 1075, 1121, 1276, 1322, 1349, 1385
HspAI GCGC 4 cut(s) 930, 1069, 1131, 1270
KroI GCCGGC 1 cut(s) 437
KroNI GCCGGC 1 cut(s) 439
Kzo9I GATC 7 cut(s) 559, 703, 859, 1059, 1260, 1384, 1437
LguI GCTCTTC 2 cut(s) 1116, 1317
LmnI GCTCC 5 cut(s) 961, 1066, 1131, 1162, 1267
Lsp1109I GCAGC 1 cut(s) 1411
MaeI CTAG 4 cut(s) 935, 1040, 1136, 1241
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 3 cut(s) 164, 730, 871
MalI GATC 7 cut(s) 561, 705, 861, 1061, 1262, 1386, 1439
MboI GATC 7 cut(s) 559, 703, 859, 1059, 1260, 1384, 1437
MfeI CAATTG 1 cut(s) 238
MflI RGATCY 1 cut(s) 1437
MhlI GDGCHC 2 cut(s) 1128, 1329
MluCI AATT 9 cut(s) 32, 101, 238, 263, 470, 528, 806, 852, 888
MlyI GAGTC 2 cut(s) 1054, 1255
MnlI CCTC 7 cut(s) 77, 150, 237, 481, 484, 508, 1428
MroNI GCCGGC 1 cut(s) 437
MroXI GAANNNNTTC 1 cut(s) 540
MseI TTAA 5 cut(s) 281, 473, 507, 527, 600
MspA1I CMGCKG 3 cut(s) 301, 456, 719
MspI CCGG 3 cut(s) 438, 1063, 1264
MspR9I CCNGG 2 cut(s) 1064, 1265
MunI CAATTG 1 cut(s) 238
MvnI CGCG 3 cut(s) 930, 1131, 1184
MwoI GCNNNNNNNGC 2 cut(s) 667, 1421
NaeI GCCGGC 1 cut(s) 439
NciI CCSGG 2 cut(s) 1064, 1265
NcoI CCATGG 1 cut(s) 27
NdeI CATATG 1 cut(s) 901
NdeII GATC 7 cut(s) 559, 703, 859, 1059, 1260, 1384, 1437
NgoMIV GCCGGC 1 cut(s) 437
NlaIII CATG 8 cut(s) 31, 847, 1075, 1121, 1276, 1322, 1349, 1385
NlaIV GGNNCC 1 cut(s) 198
NmeAIII GCCGAG 1 cut(s) 748
NruI TCGCGA 1 cut(s) 1184
NspI RCATGY 3 cut(s) 847, 1075, 1276
PaeI GCATGC 1 cut(s) 847
PagI TCATGA 2 cut(s) 1117, 1318
PceI AGGCCT 1 cut(s) 641
PciSI GCTCTTC 2 cut(s) 1116, 1317
PdiI GCCGGC 1 cut(s) 439
PdmI GAANNNNTTC 1 cut(s) 540
PfeI GAWTC 2 cut(s) 94, 536
PfoI TCCNGGA 2 cut(s) 1062, 1263
PkrI GCNGC 5 cut(s) 458, 721, 746, 929, 1426
Ple19I CGATCG 1 cut(s) 562
PleI GAGTC 2 cut(s) 1053, 1254
PpsI GAGTC 2 cut(s) 1053, 1254
PsiI TTATAA 2 cut(s) 1094, 1295
Psp124BI GAGCTC 2 cut(s) 1128, 1329
PspN4I GGNNCC 1 cut(s) 198
PspPI GGNCC 6 cut(s) 137, 272, 517, 950, 978, 1151
PsuI RGATCY 1 cut(s) 1437
PvuI CGATCG 1 cut(s) 562
RruI TCGCGA 1 cut(s) 1184
RsaI GTAC 1 cut(s) 69
RsaNI GTAC 1 cut(s) 68
SacI GAGCTC 2 cut(s) 1128, 1329
SapI GCTCTTC 2 cut(s) 1116, 1317
SaqAI TTAA 5 cut(s) 281, 473, 507, 527, 600
SatI GCNGC 5 cut(s) 457, 720, 745, 928, 1425
Sau3AI GATC 7 cut(s) 559, 703, 859, 1059, 1260, 1384, 1437
Sau96I GGNCC 6 cut(s) 137, 272, 517, 950, 978, 1151
SchI GAGTC 2 cut(s) 1054, 1255
ScrFI CCNGG 2 cut(s) 1064, 1265
SduI GDGCHC 2 cut(s) 1128, 1329
SinI GGWCC 3 cut(s) 517, 950, 1151
SmlI CTYRAG 1 cut(s) 1328
SmoI CTYRAG 1 cut(s) 1328
SphI GCATGC 1 cut(s) 847
Sse9I AATT 9 cut(s) 32, 101, 238, 263, 470, 528, 806, 852, 888
SseBI AGGCCT 1 cut(s) 641
SsiI CCGC 9 cut(s) 301, 346, 456, 719, 745, 787, 841, 928, 1129
SspI AATATT 1 cut(s) 428
SspMI CTAG 4 cut(s) 935, 1040, 1136, 1241
SstI GAGCTC 2 cut(s) 1128, 1329
StuI AGGCCT 1 cut(s) 641
StyD4I CCNGG 2 cut(s) 1062, 1263
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 3 cut(s) 185, 291, 763
TaiI ACGT 1 cut(s) 166
TaqI TCGA 2 cut(s) 1048, 1249
TaqII GACCGA 1 cut(s) 808
TasI AATT 9 cut(s) 32, 101, 238, 263, 470, 528, 806, 852, 888
TatI WGTACW 1 cut(s) 67
TauI GCSGC 4 cut(s) 459, 722, 747, 930
TfiI GAWTC 2 cut(s) 94, 536
Tru1I TTAA 5 cut(s) 281, 473, 507, 527, 600
Tru9I TTAA 5 cut(s) 281, 473, 507, 527, 600
TscAI CASTG 1 cut(s) 928
TseI GCWGC 1 cut(s) 1424
TspDTI ATGAA 8 cut(s) 256, 399, 533, 549, 1134, 1335, 1407, 1415
TspGWI ACGGA 1 cut(s) 989
TspRI CASTG 1 cut(s) 928
VpaK11BI GGWCC 3 cut(s) 517, 950, 1151
XapI RAATTY 3 cut(s) 32, 263, 806
XbaI TCTAGA 2 cut(s) 934, 1135
XceI RCATGY 3 cut(s) 847, 1075, 1276
XmnI GAANNNNTTC 1 cut(s) 540
XspI CTAG 4 cut(s) 935, 1040, 1136, 1241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.