Rw5G010950

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000063
Physical Location & Seq
Forward (+)
12043399 .. 12049254
5856 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G010950.1

Sequence Viewer

Length: 1905 bp
ATGGACGACATTACTAACCATCTGGATCGCACGTACAGTGCAACAGATTCGGTGATTTCTGTTAATTGTGACAAAAGTGTCGAGCTTGGCCCTTGTTGGCCTAAGATTCCCCCTGCTTCTGTTCAAGACTTACTCAAGGATGAGCCTTCAAGGCTTGTTCCGGTCCACTGTCGTCGAGGTGAAGAAATTTCATGGAATGATTGGTCGGATAAGCCATTCCCAAGTTGGCCAACCCACGATGAAGCCTGGACTACCTGGGTCGAAAAGATGCTTCCTTATTACGGTGATCACTGGAAGAAGGCCAACATCTACGACCCAATAATGCTCTCCGCCAAGCGCTTCTTCCCCGACAAGGCTCTCCTCAGCGCTGCGTTTTGCTTTTGGAACTCATCATCCAACACTATGGACTTGCCTCTCGGGATGATGAGTGTGAGTCTGCTTGACGTTGCTGCCATTGCTGGGTTTAGGCCTCATGGCGCCGCTTATGACTGCACTGCTCCGTTGAAGCCCAAAACCAAGTTTAGGTGTGGTCGGCACTTTGAATATGGAAGTTGGATAGACTATCATAATAGTGACAAAAGCAACAAAGTTGTCGATCAAGAGCACATAGCGTTCCTCCTCTACTGGCTCTGTAGGTATGTCTTCTGTGTACCTTCAGGGATTAGTAAAGAGTGGTCTCATTTGGCAGAAGTTTTGCATCGAGGAACTGATGTGGCCTTAGGTGAGTTAGTGCTAGCCTCACTGTACAGGGGTTTGCAGAAAATCACTGTAAACCCATTTGATGGCAAAGCTGAGGGGCCACTTTGGCTGTTCCAAATGTGGTTACAGATTTACTTCCCAGACCTAGGCCCGGTTAGTGCATTTCCTGCCGATGAGGTTATGGGGGTTAGGTTGACAGACCAAGTCCCAAAACCACACTCCCCTCGTGATTGCTTCGCAACGTTGTGGAGTTTGAAATCAAACCCATGTTGGACGCACACCTTGACGAGAAGGTATCCCGGTTTCCTAAGGAATAGGTTCATGGATGGTCCAACCTCTGATGGTGCCTTAGATGAGGAAATACAGGCTGTGCTAACGAGTGTGGTGGTGCAGAGAGATCTGCTGTATGGAGGGATGAAAAATGGTAGATATTATGGAGTCCAGGCCGAATTTTATGGCCCGAACCATTTCAGTAGGCAGTTTGGTTGCCTACAAGGAATTCCTCACTCTGGTCATAAAATCGTTAATTGTTATACCTCATGGAGGGATGTACTAAAAGATGCTGCGGAAATCAGAGGCGTGTTAAATTCCAGTCGTTCCACAAAGTTGAAACCATTCCTCACCAGGTATGTGCTAACCTCTGAAACTACCCCAGGCTTTGACAAATGGTGGCATAGTCAAACCAAAGATCGATTTTCGGTAGAACATGATGGGCCCGTTGCTATCTTATATATGCATTGTCCATTCCGGGATAGCCATCATCTAGAAGTTCCAGGCTTTTCCCTTGCTGATGGAGAAAGGGAAGAAGGTGAAGAGGGAGAAGCTAAAGTTGAAAGCCCTCTCCCTACCGACAAGAATCGAAAGAGGAAAGGCAACACAAATGCTCCAAAATCAGCTAGGCAGAAGACTACTCAAGTCACAGACCGAGTCTCATTTCAGACCTTCGGAACTATGAAAAAGCTGATGTCAGATTTTTCAAGCGACACCTCCAAAAGAGCTGAGAAAATCGAAACTGAAGAACCTGAACAGACTGAGGGGCCATTGATGGGAACTGTGGAGCTAGGAAGTAAACAAATGTATGGCGATGCTGCCGTTGAAGCTGCCTCTATACCTAACAGTTTTGACAGTTTTGAGCTGGGTGCTGCAAGTGAGCCAACCACGCTAGTTCAAGGATTAATAGAGGGCAATGTCCATGAAAAGTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

634

Amino Acids

71.61

Weight (kDa)

6.04

Isoelectric Point (pI)

39.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 103 - 408 2.7e-30 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000063)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g21382 FvH4_1g29794 FvH4_1g29795 FvH4_2g35573 FvH4_2g35574 FvH4_4g18552 FvH4_5g16044
malus_domestica MD05G1017000.v1.1
prunus_persica Prupe.3G140800_v2.0.a1 Prupe.6G164100_v2.0.a1
pyrus_communis pycom01g04330 pycom03g19820 pycom04g06720 pycom06g11360 pycom06g19000 pycom10g08100 pycom13g16660 pycom13g27590 pycom13g27640 pycom13g27890 pycom16g11770 pycom16g19530
rosa_chinensis RchiOBHm_Chr1g0317341 RchiOBHm_Chr1g0317351 RchiOBHm_Chr1g0320431 RchiOBHm_Chr1g0320711 RchiOBHm_Chr1g0320721 RchiOBHm_Chr1g0321611 RchiOBHm_Chr1g0321621 RchiOBHm_Chr1g0321631 RchiOBHm_Chr1g0323651 RchiOBHm_Chr1g0332991 RchiOBHm_Chr1g0333001 RchiOBHm_Chr1g0335981 RchiOBHm_Chr1g0335991 RchiOBHm_Chr1g0336001 RchiOBHm_Chr1g0350201 RchiOBHm_Chr1g0368201 RchiOBHm_Chr2g0105531 RchiOBHm_Chr2g0105541 RchiOBHm_Chr2g0116571 RchiOBHm_Chr2g0116581 RchiOBHm_Chr2g0121071 RchiOBHm_Chr2g0131351 RchiOBHm_Chr2g0131661 RchiOBHm_Chr2g0133021 RchiOBHm_Chr2g0138181 RchiOBHm_Chr2g0138191 RchiOBHm_Chr2g0142701 RchiOBHm_Chr2g0142711 RchiOBHm_Chr2g0152981 RchiOBHm_Chr3g0456181 RchiOBHm_Chr3g0456191 RchiOBHm_Chr3g0493631 RchiOBHm_Chr3g0496201 RchiOBHm_Chr4g0401541 RchiOBHm_Chr4g0410311 RchiOBHm_Chr4g0410321 RchiOBHm_Chr4g0419231 RchiOBHm_Chr4g0419511 RchiOBHm_Chr4g0419521 RchiOBHm_Chr5g0004311 RchiOBHm_Chr5g0004321 RchiOBHm_Chr5g0038131 RchiOBHm_Chr5g0038251 RchiOBHm_Chr5g0038261 RchiOBHm_Chr5g0038271 RchiOBHm_Chr5g0052241 RchiOBHm_Chr5g0053911 RchiOBHm_Chr5g0074641 RchiOBHm_Chr5g0076651 RchiOBHm_Chr5g0076661 RchiOBHm_Chr6g0249161 RchiOBHm_Chr6g0249171 RchiOBHm_Chr6g0250961 RchiOBHm_Chr6g0253701 RchiOBHm_Chr6g0262131 RchiOBHm_Chr6g0263181 RchiOBHm_Chr6g0263231 RchiOBHm_Chr6g0263241 RchiOBHm_Chr6g0263251 RchiOBHm_Chr6g0291271 RchiOBHm_Chr7g0194611 RchiOBHm_Chr7g0219691 RchiOBHm_Chr7g0219701 RchiOBHm_Chr7g0225431 RchiOBHm_Chr7g0234221 RchiOBHm_Chr7g0238711 RchiOBHm_Chr7g0238721 RchiOBHm_Chr7g0238731 RchiOBHm_Chr7g0239611 RchiOBHm_Chr7g0239621
rosa_laevigata RLG00000001361 RLG00000001376 RLG00000001860 RLG00000002051 RLG00000002362 RLG00000008940 RLG00000012764 RLG00000018782 RLG00000029639 RLG00000030151
rosa_multiflora Rmu_co8090794.1_g000001 Rmu_co8135356.1_g000001 Rmu_co8224968.1_g000001 Rmu_sc0000016.1_g000020 Rmu_sc0000029.1_g000061 Rmu_sc0000035.1_g000032 Rmu_sc0000060.1_g000041 Rmu_sc0000148.1_g000041 Rmu_sc0000315.1_g000084 Rmu_sc0000527.1_g000005 Rmu_sc0000527.1_g000007 Rmu_sc0000527.1_g000008 Rmu_sc0000648.1_g000002 Rmu_sc0000762.1_g000076 Rmu_sc0000870.1_g000003 Rmu_sc0000870.1_g000004 Rmu_sc0000948.1_g000037 Rmu_sc0000997.1_g000003 Rmu_sc0001047.1_g000041 Rmu_sc0001047.1_g000042 Rmu_sc0001075.1_g000044 Rmu_sc0001174.1_g000006 Rmu_sc0001235.1_g000025 Rmu_sc0001292.1_g000008 Rmu_sc0001301.1_g000038 Rmu_sc0001461.1_g000069 Rmu_sc0001461.1_g000070 Rmu_sc0001669.1_g000041 Rmu_sc0001689.1_g000027 Rmu_sc0001896.1_g000008 Rmu_sc0001909.1_g000013 Rmu_sc0002170.1_g000038 Rmu_sc0002200.1_g000014 Rmu_sc0002283.1_g000027 Rmu_sc0002284.1_g000014 Rmu_sc0002294.1_g000017 Rmu_sc0002294.1_g000018 Rmu_sc0002307.1_g000020 Rmu_sc0002307.1_g000021 Rmu_sc0002307.1_g000023 Rmu_sc0002357.1_g000054 Rmu_sc0002409.1_g000005 Rmu_sc0002535.1_g000002 Rmu_sc0002589.1_g000014 Rmu_sc0002759.1_g000016 Rmu_sc0002759.1_g000017 Rmu_sc0002777.1_g000015 Rmu_sc0002824.1_g000016 Rmu_sc0002872.1_g000005 Rmu_sc0002872.1_g000012 Rmu_sc0002872.1_g000013 Rmu_sc0002942.1_g000019 Rmu_sc0003337.1_g000001 Rmu_sc0003410.1_g000052 Rmu_sc0003445.1_g000010 Rmu_sc0003773.1_g000007 Rmu_sc0003773.1_g000008 Rmu_sc0003895.1_g000002 Rmu_sc0004063.1_g000006 Rmu_sc0004088.1_g000009 Rmu_sc0004088.1_g000010 Rmu_sc0004174.1_g000027 Rmu_sc0004196.1_g000010 Rmu_sc0004515.1_g000006 Rmu_sc0004727.1_g000010 Rmu_sc0004755.1_g000018 Rmu_sc0005016.1_g000030 Rmu_sc0005026.1_g000001 Rmu_sc0005044.1_g000007 Rmu_sc0005284.1_g000001 Rmu_sc0005431.1_g000030 Rmu_sc0005802.1_g000014 Rmu_sc0005802.1_g000015 Rmu_sc0005994.1_g000004 Rmu_sc0005994.1_g000005 Rmu_sc0006059.1_g000048 Rmu_sc0006583.1_g000013 Rmu_sc0006824.1_g000009 Rmu_sc0007458.1_g000005 Rmu_sc0007707.1_g000002 Rmu_sc0008242.1_g000012 Rmu_sc0008713.1_g000006 Rmu_sc0008770.1_g000008 Rmu_sc0009785.1_g000004 Rmu_sc0009785.1_g000005 Rmu_sc0010125.1_g000001 Rmu_sc0010211.1_g000004 Rmu_sc0011034.1_g000001 Rmu_sc0011833.1_g000006 Rmu_sc0014851.1_g000001 Rmu_sc0014899.1_g000001 Rmu_sc0015060.1_g000003 Rmu_sc0015186.1_g000001 Rmu_sc0015248.1_g000003 Rmu_sc0015248.1_g000004 Rmu_sc0015314.1_g000001 Rmu_sc0018098.1_g000002 Rmu_sc0022706.1_g000004 Rmu_sc0023350.1_g000002 Rmu_sc0027636.1_g000001 Rmu_sc0027672.1_g000003 Rmu_sc0030879.1_g000001 Rmu_ssc0000008.1_g000029 Rmu_ssc0000019.1_g000014 Rmu_ssc0000050.1_g000082 Rmu_ssc0000282.1_g000004 Rmu_ssc0000311.1_g000010
rosa_roxburghii Rroxscaffold_1G00015190 Rroxscaffold_1G00031880 Rroxscaffold_1G00031890 Rroxscaffold_1G00059310 Rroxscaffold_1G00060420 Rroxscaffold_1G00067930 Rroxscaffold_1G00075030 Rroxscaffold_2G00082210 Rroxscaffold_2G00122970 Rroxscaffold_3G00218230 Rroxscaffold_3G00219020 Rroxscaffold_3G00219030 Rroxscaffold_3G00223680 Rroxscaffold_3G00223690 Rroxscaffold_3G00223700 Rroxscaffold_3G00226870 Rroxscaffold_3G00226880 Rroxscaffold_3G00232990 Rroxscaffold_3G00265610 Rroxscaffold_3G00265620 Rroxscaffold_3G00265630 Rroxscaffold_4G00318660 Rroxscaffold_4G00319060 Rroxscaffold_4G00323500 Rroxscaffold_5G00357520 Rroxscaffold_5G00366150 Rroxscaffold_5G00377470 Rroxscaffold_6G00395700 Rroxscaffold_6G00413950 Rroxscaffold_7G00187650 Rroxscaffold_7G00198290 Rroxscaffold_7G00198300 Rroxscaffold_7G00208060
rosa_rugosa Rorug01G0173900 Rorug01G0174000 Rorug01G0174100 Rorug01G0174100 Rorug02G0341200 Rorug04G0135700 Rorug04G0135800 Rorug05G0032500 Rorug06G0021800
rosa_samantha Rh1AG036600 Rh1AG245800 Rh1CG021700 Rh1CG021800 Rh1CG085800 Rh1CG085900 Rh1CG187900 Rh1CG229600 Rh1CG239600 Rh1CG246500 Rh1CG246600 Rh2BG478100 Rh2DG341300 Rh2DG366600 Rh2DG375700 Rh2DG384300 Rh2DG487000 Rh2DG504000 Rh2DG504100 Rh3AG311800 Rh3AG327500 Rh3AG328300 Rh3BG345100 Rh3CG320100 Rh4AG005700 Rh4AG067900 Rh4AG068000 Rh4AG084400 Rh4AG106700 Rh4AG160000 Rh4AG173900 Rh4AG174000 Rh4CG125300 Rh4CG125500 Rh4CG264500 Rh4DG110800 Rh5AG047300 Rh5AG085200 Rh5AG126300 Rh5AG127300 Rh5AG203000 Rh5AG332400 Rh5AG332500 Rh5AG342400 Rh5AG344100 Rh5AG375600 Rh5AG378300 Rh5AG386000 Rh5AG529600 Rh5BG125200 Rh5CG137600 Rh5CG137700 Rh5DG125200 Rh6BG134100 Rh6BG175400 Rh6BG179500 Rh6BG179600 Rh6BG181600 Rh6BG181700 Rh6BG191100 Rh6BG232900 Rh6BG259700 Rh6BG259800 Rh7AG028000 Rh7AG319400 Rh7AG352700 Rh7AG352800 Rh7AG352900 Rh7AG482500 Rh7AG482600 Rh7AG503800 Rh7BG334700 Rh7CG200100 Rh7CG336200 Rh7CG370200 Rh7CG370400 Rh7CG370500
rosa_wichuraiana Rw1G001580 Rw1G003570 Rw1G004260 Rw1G004270 Rw1G021170 Rw2G019390 Rw2G040280 Rw2G044050 Rw4G004430 Rw5G010950 Rw5G018350 Rw5G032890 Rw6G002840 Rw6G006510 Rw6G007780 Rw6G033790 Rw7G036320 Rw7G040550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AccB1I GGYRCC 2 cut(s) 476, 1043
AccB7I CCANNNNNTGG 1 cut(s) 782
AciI CCGC 3 cut(s) 330, 480, 1265
AclI AACGTT 1 cut(s) 941
AclWI GGATC 1 cut(s) 33
AcoI YGGCCR 1 cut(s) 227
AcsI RAATTY 4 cut(s) 186, 1148, 1197, 1285
AcuI CTGAAG 2 cut(s) 639, 1734
AcyI GRCGYC 1 cut(s) 477
AfaI GTAC 4 cut(s) 35, 651, 746, 1251
AfeI AGCGCT 2 cut(s) 338, 367
AjnI CCWGG 6 cut(s) 245, 254, 1140, 1322, 1351, 1471
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AloI GAACNNNNNNTCC 2 cut(s) 377, 409
AluBI AGCT 9 cut(s) 85, 791, 1523, 1595, 1660, 1697, 1759, 1799, 1834
AluI AGCT 9 cut(s) 85, 791, 1523, 1595, 1660, 1697, 1759, 1799, 1834
Alw21I GWGCWC 1 cut(s) 606
Alw26I GTCTC 2 cut(s) 681, 1633
AlwI GGATC 1 cut(s) 33
Ama87I CYCGRG 1 cut(s) 416
Aor51HI AGCGCT 2 cut(s) 338, 367
ApaI GGGCCC 1 cut(s) 1416
ApeKI GCWGC 6 cut(s) 368, 449, 1262, 1787, 1799, 1841
ApoI RAATTY 4 cut(s) 186, 1148, 1197, 1285
AseI ATTAAT 1 cut(s) 1874
Asp700I GAANNNNTTC 3 cut(s) 1016, 1166, 1313
AspA2I CCTAGG 1 cut(s) 844
AspLEI GCGC 3 cut(s) 339, 368, 479
AspS9I GGNCC 9 cut(s) 89, 163, 797, 848, 1028, 1157, 1412, 1413, 1736
AsuC2I CCSGG 3 cut(s) 851, 999, 1448
AsuHPI GGTGA 6 cut(s) 64, 191, 296, 734, 1312, 1520
AsuNHI GCTAGC 1 cut(s) 733
AvaI CYCGRG 1 cut(s) 416
AvaII GGWCC 2 cut(s) 163, 1028
AvrII CCTAGG 1 cut(s) 844
AxyI CCTNAGG 2 cut(s) 718, 1007
BaeGI GKGCMC 1 cut(s) 1416
BalI TGGCCA 1 cut(s) 229
BanI GGYRCC 2 cut(s) 476, 1043
BanII GRGCYC 1 cut(s) 1416
BauI CACGAG 1 cut(s) 924
BbsI GAAGAC 2 cut(s) 634, 1610
Bbv12I GWGCWC 1 cut(s) 606
BbvCI CCTCAGC 2 cut(s) 362, 792
BbvI GCAGC 6 cut(s) 355, 436, 1249, 1774, 1786, 1828
BccI CCATC 8 cut(s) 27, 776, 1019, 1034, 1403, 1464, 1484, 1738
BceAI ACGGC 1 cut(s) 1775
BcgI CGANNNNNNTGC 2 cut(s) 30, 64
BciT130I CCWGG 6 cut(s) 247, 256, 1142, 1324, 1353, 1473
BciVI GTATCC 1 cut(s) 1005
BclI TGATCA 1 cut(s) 286
BcnI CCSGG 3 cut(s) 851, 999, 1448
BcoDI GTCTC 2 cut(s) 681, 1633
BfaI CTAG 6 cut(s) 734, 845, 1463, 1596, 1760, 1862
BfmI CTRYAG 1 cut(s) 631
BfoI RGCGCY 3 cut(s) 340, 369, 480
BfuI GTATCC 1 cut(s) 1005
BglI GCCNNNNNGGC 2 cut(s) 151, 805
BglII AGATCT 1 cut(s) 1096
BisI GCNGC 7 cut(s) 369, 450, 480, 1263, 1788, 1800, 1842
BlnI CCTAGG 1 cut(s) 844
BlsI GCNGC 7 cut(s) 370, 451, 481, 1264, 1789, 1801, 1843
Bme1390I CCNGG 9 cut(s) 247, 256, 851, 999, 1142, 1324, 1353, 1448, 1473
Bme18I GGWCC 2 cut(s) 163, 1028
BmeT110I CYCGRG 1 cut(s) 416
BmgT120I GGNCC 9 cut(s) 89, 163, 797, 848, 1028, 1157, 1412, 1413, 1736
BmiI GGNNCC 5 cut(s) 478, 798, 1045, 1414, 1737
BmrFI CCNGG 9 cut(s) 247, 256, 851, 999, 1142, 1324, 1353, 1448, 1473
BmsI GCATC 4 cut(s) 258, 706, 1249, 1774
BmtI GCTAGC 1 cut(s) 737
BpiI GAAGAC 2 cut(s) 634, 1610
Bpu10I CCTNAGC 2 cut(s) 362, 792
BpuEI CTTGAG 2 cut(s) 119, 1596
BpuMI CCSGG 3 cut(s) 851, 999, 1448
Bsa29I ATCGAT 1 cut(s) 1390
BsaAI YACGTR 1 cut(s) 33
BsaBI GATNNNNATC 1 cut(s) 1455
BsaHI GRCGYC 1 cut(s) 477
BsaI GGTCTC 1 cut(s) 681
BsaJI CCNNGG 3 cut(s) 255, 844, 1351
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 2 cut(s) 1567, 1597
Bse1I ACTGG 3 cut(s) 296, 629, 1290
Bse21I CCTNAGG 2 cut(s) 718, 1007
Bse3DI GCAATG 2 cut(s) 453, 1891
Bse8I GATNNNNATC 1 cut(s) 1455
BseBI CCWGG 6 cut(s) 247, 256, 1142, 1324, 1353, 1473
BseCI ATCGAT 1 cut(s) 1390
BseDI CCNNGG 3 cut(s) 255, 844, 1351
BseGI GGATG 6 cut(s) 145, 392, 426, 1030, 1119, 1252
BseJI GATNNNNATC 1 cut(s) 1455
BseMI GCAATG 2 cut(s) 453, 1891
BseMII CTCAG 4 cut(s) 376, 783, 1689, 1722
BseNI ACTGG 3 cut(s) 296, 629, 1290
BseRI GAGGAG 2 cut(s) 350, 608
BseSI GKGCMC 1 cut(s) 1416
BseXI GCAGC 6 cut(s) 355, 436, 1249, 1774, 1786, 1828
BseYI CCCAGC 2 cut(s) 458, 1834
BsgI GTGCAG 2 cut(s) 475, 1109
BshNI GGYRCC 2 cut(s) 476, 1043
BshVI ATCGAT 1 cut(s) 1390
BsiHKAI GWGCWC 1 cut(s) 606
BsiHKCI CYCGRG 1 cut(s) 416
BsiSI CCGG 4 cut(s) 161, 851, 999, 1447
BslFI GGGAC 1 cut(s) 890
BsmAI GTCTC 2 cut(s) 681, 1633
BsmFI GGGAC 1 cut(s) 890
Bso31I GGTCTC 1 cut(s) 681
BsoBI CYCGRG 1 cut(s) 416
Bsp120I GGGCCC 1 cut(s) 1412
Bsp1286I GDGCHC 2 cut(s) 606, 1416
Bsp1407I TGTACA 1 cut(s) 744
Bsp143I GATC 5 cut(s) 25, 286, 595, 1096, 1387
BspACI CCGC 3 cut(s) 330, 480, 1265
BspCNI CTCAG 4 cut(s) 375, 784, 1690, 1723
BspDI ATCGAT 1 cut(s) 1390
BspLI GGNNCC 5 cut(s) 478, 798, 1045, 1414, 1737
BspOI GCTAGC 1 cut(s) 737
BspPI GGATC 1 cut(s) 33
BspT107I GGYRCC 2 cut(s) 476, 1043
BspTNI GGTCTC 1 cut(s) 681
BsrDI GCAATG 2 cut(s) 453, 1891
BsrGI TGTACA 1 cut(s) 744
BsrI ACTGG 3 cut(s) 296, 629, 1290
BssECI CCNNGG 3 cut(s) 255, 844, 1351
BssMI GATC 5 cut(s) 25, 286, 595, 1096, 1387
BssNI GRCGYC 1 cut(s) 477
BssSI CACGAG 1 cut(s) 924
BssT1I CCWWGG 1 cut(s) 844
Bst2BI CACGAG 1 cut(s) 924
Bst2UI CCWGG 6 cut(s) 247, 256, 1142, 1324, 1353, 1473
Bst4CI ACNGT 8 cut(s) 38, 170, 284, 744, 769, 1753, 1817, 1826
Bst6I CTCTTC 1 cut(s) 1506
BstACI GRCGYC 1 cut(s) 477
BstAPI GCANNNNNTGC 1 cut(s) 866
BstAUI TGTACA 1 cut(s) 744
BstBAI YACGTR 1 cut(s) 33
BstC8I GCNNGC 1 cut(s) 735
BstDEI CTNAG 8 cut(s) 102, 362, 718, 792, 1007, 1048, 1698, 1731
BstENI CCTNNNNNAGG 1 cut(s) 1240
BstF5I GGATG 6 cut(s) 145, 392, 426, 1030, 1119, 1252
BstH2I RGCGCY 3 cut(s) 340, 369, 480
BstHHI GCGC 3 cut(s) 339, 368, 479
BstKTI GATC 5 cut(s) 28, 289, 598, 1099, 1390
BstMAI GTCTC 2 cut(s) 681, 1633
BstMBI GATC 5 cut(s) 25, 286, 595, 1096, 1387
BstMWI GCNNNNNNNGC 6 cut(s) 151, 455, 805, 866, 1796, 1858
BstNI CCWGG 6 cut(s) 247, 256, 1142, 1324, 1353, 1473
BstSCI CCNGG 9 cut(s) 245, 254, 849, 997, 1140, 1322, 1351, 1446, 1471
BstSFI CTRYAG 1 cut(s) 631
BstSLI GKGCMC 1 cut(s) 1416
BstV1I GCAGC 6 cut(s) 355, 436, 1249, 1774, 1786, 1828
BstV2I GAAGAC 2 cut(s) 634, 1610
BstX2I RGATCY 1 cut(s) 1096
BstXI CCANNNNNNTGG 1 cut(s) 403
BstYI RGATCY 1 cut(s) 1096
Bsu15I ATCGAT 1 cut(s) 1390
Bsu36I CCTNAGG 2 cut(s) 718, 1007
BsuI GTATCC 1 cut(s) 1005
BsuTUI ATCGAT 1 cut(s) 1390
BtgZI GCGATG 1 cut(s) 1797
BtsCI GGATG 6 cut(s) 145, 392, 426, 1030, 1119, 1252
BtsI GCAGTG 1 cut(s) 492
BtsIMutI CAGTG 6 cut(s) 43, 166, 289, 492, 740, 765
Cac8I GCNNGC 1 cut(s) 735
CfoI GCGC 3 cut(s) 339, 368, 479
Cfr13I GGNCC 9 cut(s) 89, 163, 797, 848, 1028, 1157, 1412, 1413, 1736
ClaI ATCGAT 1 cut(s) 1390
CseI GACGC 1 cut(s) 982
CsiI ACCWGGT 1 cut(s) 1322
Csp6I GTAC 4 cut(s) 34, 650, 745, 1250
CviAII CATG 7 cut(s) 192, 473, 966, 1021, 1239, 1406, 1892
CviQI GTAC 4 cut(s) 34, 650, 745, 1250
DdeI CTNAG 8 cut(s) 102, 362, 718, 792, 1007, 1048, 1698, 1731
DinI GGCGCC 1 cut(s) 478
DpnI GATC 5 cut(s) 27, 288, 597, 1098, 1389
DpnII GATC 5 cut(s) 25, 286, 595, 1096, 1387
DrdI GACNNNNNNGTC 1 cut(s) 77
DseDI GACNNNNNNGTC 1 cut(s) 77
EaeI YGGCCR 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 1506
EarI CTCTTC 1 cut(s) 1506
EciI GGCGGA 1 cut(s) 319
Eco130I CCWWGG 1 cut(s) 844
Eco147I AGGCCT 1 cut(s) 469
Eco24I GRGCYC 1 cut(s) 1416
Eco31I GGTCTC 1 cut(s) 681
Eco47I GGWCC 2 cut(s) 163, 1028
Eco47III AGCGCT 2 cut(s) 338, 367
Eco57I CTGAAG 2 cut(s) 639, 1734
Eco81I CCTNAGG 2 cut(s) 718, 1007
Eco88I CYCGRG 1 cut(s) 416
EcoNI CCTNNNNNAGG 1 cut(s) 1240
EcoRI GAATTC 1 cut(s) 1197
EcoRII CCWGG 6 cut(s) 245, 254, 1140, 1322, 1351, 1471
EcoT14I CCWWGG 1 cut(s) 844
EcoT22I ATGCAT 1 cut(s) 1437
EcoT38I GRGCYC 1 cut(s) 1416
EgeI GGCGCC 1 cut(s) 478
EheI GGCGCC 1 cut(s) 478
ErhI CCWWGG 1 cut(s) 844
FaeI CATG 7 cut(s) 195, 476, 969, 1024, 1242, 1409, 1895
FalI AAGNNNNNCTT 2 cut(s) 326, 358
FaqI GGGAC 1 cut(s) 890
FatI CATG 7 cut(s) 191, 472, 965, 1020, 1238, 1405, 1891
FbaI TGATCA 1 cut(s) 286
Fnu4HI GCNGC 7 cut(s) 369, 450, 480, 1263, 1788, 1800, 1842
FokI GGATG 6 cut(s) 152, 379, 433, 1037, 1126, 1259
FriOI GRGCYC 1 cut(s) 1416
Fsp4HI GCNGC 7 cut(s) 369, 450, 480, 1263, 1788, 1800, 1842
FspBI CTAG 6 cut(s) 734, 845, 1463, 1596, 1760, 1862
GlaI GCGC 3 cut(s) 338, 367, 478
GluI GCNGC 7 cut(s) 369, 450, 480, 1263, 1788, 1800, 1842
GsaI CCCAGC 2 cut(s) 462, 1838
HaeII RGCGCY 3 cut(s) 340, 369, 480
HapII CCGG 4 cut(s) 161, 851, 999, 1447
HgaI GACGC 1 cut(s) 982
HhaI GCGC 3 cut(s) 339, 368, 479
Hin1I GRCGYC 1 cut(s) 477
Hin1II CATG 7 cut(s) 195, 476, 969, 1024, 1242, 1409, 1895
Hin6I GCGC 3 cut(s) 337, 366, 477
HinP1I GCGC 3 cut(s) 337, 366, 477
HincII GTYRAC 1 cut(s) 894
HindII GTYRAC 1 cut(s) 894
HinfI GANTC 6 cut(s) 47, 106, 433, 1137, 1555, 1626
HpaII CCGG 4 cut(s) 161, 851, 999, 1447
HphI GGTGA 6 cut(s) 64, 191, 296, 734, 1312, 1520
Hpy166II GTNNAC 5 cut(s) 166, 650, 772, 894, 1769
Hpy188I TCNGA 7 cut(s) 208, 1039, 1274, 1342, 1638, 1646, 1669
Hpy188III TCNNGA 6 cut(s) 23, 125, 418, 599, 926, 1463
Hpy8I GTNNAC 5 cut(s) 166, 650, 772, 894, 1769
Hpy99I CGWCG 1 cut(s) 177
HpyAV CCTTC 6 cut(s) 156, 292, 663, 984, 1499, 1651
HpyCH4III ACNGT 8 cut(s) 38, 170, 284, 744, 769, 1753, 1817, 1826
HpyCH4IV ACGT 3 cut(s) 32, 444, 941
HpyCH4V TGCA 8 cut(s) 41, 492, 697, 757, 860, 1090, 1435, 1844
HpyF10VI GCNNNNNNNGC 6 cut(s) 151, 455, 805, 866, 1796, 1858
HpyF3I CTNAG 8 cut(s) 102, 362, 718, 792, 1007, 1048, 1698, 1731
HpySE526I ACGT 3 cut(s) 32, 444, 941
Hsp92I GRCGYC 1 cut(s) 477
Hsp92II CATG 7 cut(s) 195, 476, 969, 1024, 1242, 1409, 1895
HspAI GCGC 3 cut(s) 337, 366, 477
KasI GGCGCC 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 286
Kzo9I GATC 5 cut(s) 25, 286, 595, 1096, 1387
LmnI GCTCC 3 cut(s) 502, 1588, 1756
Lsp1109I GCAGC 6 cut(s) 355, 436, 1249, 1774, 1786, 1828
LweI GCATC 4 cut(s) 258, 706, 1249, 1774
MabI ACCWGGT 1 cut(s) 1322
MaeI CTAG 6 cut(s) 734, 845, 1463, 1596, 1760, 1862
MaeII ACGT 3 cut(s) 32, 444, 941
MaeIII GTNAC 4 cut(s) 68, 572, 822, 1615
MalI GATC 5 cut(s) 27, 288, 597, 1098, 1389
MboI GATC 5 cut(s) 25, 286, 595, 1096, 1387
MboII GAAGA 8 cut(s) 194, 307, 334, 634, 1514, 1523, 1615, 1727
MflI RGATCY 1 cut(s) 1096
MhlI GDGCHC 2 cut(s) 606, 1416
MlsI TGGCCA 1 cut(s) 229
MluCI AATT 6 cut(s) 64, 186, 1148, 1197, 1225, 1285
MluNI TGGCCA 1 cut(s) 229
Mly113I GGCGCC 1 cut(s) 477
MlyI GAGTC 3 cut(s) 442, 1146, 1635
MmeI TCCRAC 5 cut(s) 186, 420, 533, 950, 1055
Mox20I TGGCCA 1 cut(s) 229
Mph1103I ATGCAT 1 cut(s) 1437
MroXI GAANNNNTTC 3 cut(s) 1016, 1166, 1313
MscI TGGCCA 1 cut(s) 229
MseI TTAA 5 cut(s) 63, 1224, 1283, 1874, 1903
MslI CAYNNNNRTG 1 cut(s) 570
Msp20I TGGCCA 1 cut(s) 229
MspI CCGG 4 cut(s) 161, 851, 999, 1447
MspR9I CCNGG 9 cut(s) 247, 256, 851, 999, 1142, 1324, 1353, 1448, 1473
MvaI CCWGG 6 cut(s) 247, 256, 1142, 1324, 1353, 1473
MwoI GCNNNNNNNGC 6 cut(s) 151, 455, 805, 866, 1796, 1858
NarI GGCGCC 1 cut(s) 477
NciI CCSGG 3 cut(s) 851, 999, 1448
NdeII GATC 5 cut(s) 25, 286, 595, 1096, 1387
NheI GCTAGC 1 cut(s) 733
NlaIII CATG 7 cut(s) 195, 476, 969, 1024, 1242, 1409, 1895
NlaIV GGNNCC 5 cut(s) 478, 798, 1045, 1414, 1737
NmuCI GTSAC 3 cut(s) 68, 572, 1615
NsiI ATGCAT 1 cut(s) 1437
PceI AGGCCT 1 cut(s) 469
PdmI GAANNNNTTC 3 cut(s) 1016, 1166, 1313
PfeI GAWTC 3 cut(s) 47, 106, 1555
PflFI GACNNNGTC 2 cut(s) 902, 1625
PflMI CCANNNNNTGG 1 cut(s) 782
PfoI TCCNGGA 1 cut(s) 1446
PkrI GCNGC 7 cut(s) 370, 451, 481, 1264, 1789, 1801, 1843
PleI GAGTC 3 cut(s) 441, 1145, 1634
PluTI GGCGCC 1 cut(s) 480
PpsI GAGTC 3 cut(s) 441, 1145, 1634
Ppu21I YACGTR 1 cut(s) 33
PshBI ATTAAT 1 cut(s) 1874
Psp1406I AACGTT 1 cut(s) 941
Psp6I CCWGG 6 cut(s) 245, 254, 1140, 1322, 1351, 1471
PspFI CCCAGC 2 cut(s) 458, 1834
PspGI CCWGG 6 cut(s) 245, 254, 1140, 1322, 1351, 1471
PspN4I GGNNCC 5 cut(s) 478, 798, 1045, 1414, 1737
PspOMI GGGCCC 1 cut(s) 1412
PspPI GGNCC 9 cut(s) 89, 163, 797, 848, 1028, 1157, 1412, 1413, 1736
PsuI RGATCY 1 cut(s) 1096
PsyI GACNNNGTC 2 cut(s) 902, 1625
RsaI GTAC 4 cut(s) 35, 651, 746, 1251
RsaNI GTAC 4 cut(s) 34, 650, 745, 1250
RseI CAYNNNNRTG 1 cut(s) 570
SaqAI TTAA 5 cut(s) 63, 1224, 1283, 1874, 1903
SatI GCNGC 7 cut(s) 369, 450, 480, 1263, 1788, 1800, 1842
Sau3AI GATC 5 cut(s) 25, 286, 595, 1096, 1387
Sau96I GGNCC 9 cut(s) 89, 163, 797, 848, 1028, 1157, 1412, 1413, 1736
SchI GAGTC 3 cut(s) 442, 1146, 1635
ScrFI CCNGG 9 cut(s) 247, 256, 851, 999, 1142, 1324, 1353, 1448, 1473
SduI GDGCHC 2 cut(s) 606, 1416
SexAI ACCWGGT 1 cut(s) 1322
SfaNI GCATC 4 cut(s) 258, 706, 1249, 1774
SfcI CTRYAG 1 cut(s) 631
SfoI GGCGCC 1 cut(s) 478
SinI GGWCC 2 cut(s) 163, 1028
SmiMI CAYNNNNRTG 1 cut(s) 570
SmlI CTYRAG 2 cut(s) 134, 1611
SmoI CTYRAG 2 cut(s) 134, 1611
Sse9I AATT 6 cut(s) 64, 186, 1148, 1197, 1225, 1285
SseBI AGGCCT 1 cut(s) 469
SsiI CCGC 3 cut(s) 330, 480, 1265
SspDI GGCGCC 1 cut(s) 476
SspMI CTAG 6 cut(s) 734, 845, 1463, 1596, 1760, 1862
StuI AGGCCT 1 cut(s) 469
StyD4I CCNGG 9 cut(s) 245, 254, 849, 997, 1140, 1322, 1351, 1446, 1471
StyI CCWWGG 1 cut(s) 844
TaaI ACNGT 8 cut(s) 38, 170, 284, 744, 769, 1753, 1817, 1826
TaiI ACGT 3 cut(s) 35, 447, 944
TaqI TCGA 8 cut(s) 81, 175, 261, 594, 700, 1390, 1558, 1707
TaqII GACCGA 1 cut(s) 1638
TasI AATT 6 cut(s) 64, 186, 1148, 1197, 1225, 1285
TatI WGTACW 2 cut(s) 744, 1249
TauI GCSGC 1 cut(s) 482
TfiI GAWTC 3 cut(s) 47, 106, 1555
Tru1I TTAA 5 cut(s) 63, 1224, 1283, 1874, 1903
Tru9I TTAA 5 cut(s) 63, 1224, 1283, 1874, 1903
TscAI CASTG 6 cut(s) 43, 173, 296, 499, 747, 772
TseFI GTSAC 3 cut(s) 68, 572, 1615
TseI GCWGC 6 cut(s) 368, 449, 1262, 1787, 1799, 1841
Tsp45I GTSAC 3 cut(s) 68, 572, 1615
TspDTI ATGAA 5 cut(s) 180, 255, 1009, 1130, 1667
TspGWI ACGGA 1 cut(s) 489
TspRI CASTG 6 cut(s) 43, 173, 296, 499, 747, 772
Tth111I GACNNNGTC 2 cut(s) 902, 1625
Van91I CCANNNNNTGG 1 cut(s) 782
VpaK11BI GGWCC 2 cut(s) 163, 1028
VspI ATTAAT 1 cut(s) 1874
XagI CCTNNNNNAGG 1 cut(s) 1240
XapI RAATTY 4 cut(s) 186, 1148, 1197, 1285
XbaI TCTAGA 1 cut(s) 1462
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XmaJI CCTAGG 1 cut(s) 844
XmnI GAANNNNTTC 3 cut(s) 1016, 1166, 1313
XspI CTAG 6 cut(s) 734, 845, 1463, 1596, 1760, 1862
Zsp2I ATGCAT 1 cut(s) 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.