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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 994 |
| AccI | GTMKAC | 2 cut(s) | 761, 984 |
| AccIII | TCCGGA | 1 cut(s) | 203 |
| AciI | CCGC | 3 cut(s) | 51, 71, 596 |
| AcoI | YGGCCR | 2 cut(s) | 91, 772 |
| AcsI | RAATTY | 1 cut(s) | 673 |
| AcuI | CTGAAG | 4 cut(s) | 249, 308, 428, 873 |
| AfaI | GTAC | 4 cut(s) | 87, 132, 606, 950 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 64, 133, 134, 274, 364, 484, 994 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 782, 814, 824, 856 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 880, 912 |
| AluBI | AGCT | 8 cut(s) | 19, 254, 303, 373, 423, 493, 851, 924 |
| AluI | AGCT | 8 cut(s) | 19, 254, 303, 373, 423, 493, 851, 924 |
| Alw26I | GTCTC | 1 cut(s) | 686 |
| Aor13HI | TCCGGA | 1 cut(s) | 203 |
| AoxI | GGCC | 3 cut(s) | 91, 772, 876 |
| ApoI | RAATTY | 1 cut(s) | 673 |
| AspLEI | GCGC | 1 cut(s) | 266 |
| AsuC2I | CCSGG | 3 cut(s) | 128, 359, 479 |
| AsuHPI | GGTGA | 1 cut(s) | 20 |
| BalI | TGGCCA | 1 cut(s) | 774 |
| BanII | GRGCYC | 2 cut(s) | 359, 479 |
| BbsI | GAAGAC | 3 cut(s) | 81, 797, 1005 |
| BccI | CCATC | 3 cut(s) | 120, 277, 890 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 387, 421, 507, 541 |
| BclI | TGATCA | 1 cut(s) | 247 |
| BcnI | CCSGG | 3 cut(s) | 128, 359, 479 |
| BcoDI | GTCTC | 1 cut(s) | 686 |
| BfaI | CTAG | 4 cut(s) | 341, 461, 573, 915 |
| BglII | AGATCT | 1 cut(s) | 907 |
| BlpI | GCTNAGC | 2 cut(s) | 107, 279 |
| BmcAI | AGTACT | 1 cut(s) | 606 |
| Bme1390I | CCNGG | 3 cut(s) | 128, 359, 479 |
| BmrFI | CCNGG | 3 cut(s) | 128, 359, 479 |
| BmsI | GCATC | 3 cut(s) | 58, 225, 583 |
| BpiI | GAAGAC | 3 cut(s) | 81, 797, 1005 |
| BpmI | CTGGAG | 2 cut(s) | 335, 455 |
| Bpu10I | CCTNAGC | 1 cut(s) | 63 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 107, 279 |
| BpuEI | CTTGAG | 1 cut(s) | 615 |
| BpuMI | CCSGG | 3 cut(s) | 128, 359, 479 |
| BsaJI | CCNNGG | 3 cut(s) | 156, 567, 988 |
| BsaWI | WCCGGW | 1 cut(s) | 203 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 64, 133, 134, 274, 364, 484, 994 |
| Bse118I | RCCGGY | 1 cut(s) | 719 |
| Bse1I | ACTGG | 1 cut(s) | 757 |
| Bse3DI | GCAATG | 1 cut(s) | 101 |
| BseAI | TCCGGA | 1 cut(s) | 203 |
| BseDI | CCNNGG | 3 cut(s) | 156, 567, 988 |
| BseGI | GGATG | 6 cut(s) | 73, 240, 295, 415, 598, 882 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 64, 133, 134, 274, 364, 484, 994 |
| BseMI | GCAATG | 1 cut(s) | 101 |
| BseMII | CTCAG | 1 cut(s) | 270 |
| BseNI | ACTGG | 1 cut(s) | 757 |
| BshFI | GGCC | 3 cut(s) | 93, 774, 878 |
| BsiSI | CCGG | 5 cut(s) | 128, 204, 359, 479, 720 |
| BslFI | GGGAC | 2 cut(s) | 110, 649 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 64, 133, 134, 274, 364, 484, 994 |
| BsmAI | GTCTC | 1 cut(s) | 686 |
| BsmFI | GGGAC | 2 cut(s) | 110, 649 |
| BsmI | GAATGC | 1 cut(s) | 213 |
| BsnI | GGCC | 3 cut(s) | 93, 774, 878 |
| Bsp1286I | GDGCHC | 2 cut(s) | 359, 479 |
| Bsp13I | TCCGGA | 1 cut(s) | 203 |
| Bsp143I | GATC | 3 cut(s) | 247, 766, 907 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 107, 279 |
| BspACI | CCGC | 3 cut(s) | 51, 71, 596 |
| BspANI | GGCC | 3 cut(s) | 93, 774, 878 |
| BspCNI | CTCAG | 1 cut(s) | 271 |
| BspEI | TCCGGA | 1 cut(s) | 203 |
| BspQI | GCTCTTC | 1 cut(s) | 849 |
| BsrDI | GCAATG | 1 cut(s) | 101 |
| BsrFI | RCCGGY | 1 cut(s) | 719 |
| BsrI | ACTGG | 1 cut(s) | 757 |
| BssAI | RCCGGY | 1 cut(s) | 719 |
| BssECI | CCNNGG | 3 cut(s) | 156, 567, 988 |
| BssMI | GATC | 3 cut(s) | 247, 766, 907 |
| BssT1I | CCWWGG | 2 cut(s) | 156, 988 |
| Bst6I | CTCTTC | 1 cut(s) | 849 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 820 |
| BstDEI | CTNAG | 5 cut(s) | 63, 107, 279, 513, 694 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 62 |
| BstF5I | GGATG | 6 cut(s) | 73, 240, 295, 415, 598, 882 |
| BstHHI | GCGC | 1 cut(s) | 266 |
| BstKTI | GATC | 3 cut(s) | 250, 769, 910 |
| BstMAI | GTCTC | 1 cut(s) | 686 |
| BstMBI | GATC | 3 cut(s) | 247, 766, 907 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 50, 59, 68, 820 |
| BstSCI | CCNGG | 3 cut(s) | 126, 357, 477 |
| BstV2I | GAAGAC | 3 cut(s) | 81, 797, 1005 |
| BstX2I | RGATCY | 1 cut(s) | 907 |
| BstYI | RGATCY | 1 cut(s) | 907 |
| BsuRI | GGCC | 3 cut(s) | 93, 774, 878 |
| BtsCI | GGATG | 6 cut(s) | 73, 240, 295, 415, 598, 882 |
| CfoI | GCGC | 1 cut(s) | 266 |
| Cfr10I | RCCGGY | 1 cut(s) | 719 |
| Csp6I | GTAC | 4 cut(s) | 86, 131, 605, 949 |
| CviAII | CATG | 1 cut(s) | 653 |
| CviQI | GTAC | 4 cut(s) | 86, 131, 605, 949 |
| DdeI | CTNAG | 5 cut(s) | 63, 107, 279, 513, 694 |
| DpnI | GATC | 3 cut(s) | 249, 768, 909 |
| DpnII | GATC | 3 cut(s) | 247, 766, 907 |
| EaeI | YGGCCR | 2 cut(s) | 91, 772 |
| Eam1104I | CTCTTC | 1 cut(s) | 849 |
| EarI | CTCTTC | 1 cut(s) | 849 |
| Eco130I | CCWWGG | 2 cut(s) | 156, 988 |
| Eco24I | GRGCYC | 2 cut(s) | 359, 479 |
| Eco57I | CTGAAG | 4 cut(s) | 249, 308, 428, 873 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 62 |
| EcoT14I | CCWWGG | 2 cut(s) | 156, 988 |
| EcoT22I | ATGCAT | 1 cut(s) | 968 |
| EcoT38I | GRGCYC | 2 cut(s) | 359, 479 |
| ErhI | CCWWGG | 2 cut(s) | 156, 988 |
| FaeI | CATG | 1 cut(s) | 656 |
| FaiI | YATR | 7 cut(s) | 200, 645, 654, 744, 783, 921, 995 |
| FaqI | GGGAC | 2 cut(s) | 110, 649 |
| FatI | CATG | 1 cut(s) | 652 |
| FbaI | TGATCA | 1 cut(s) | 247 |
| FblI | GTMKAC | 2 cut(s) | 761, 984 |
| FokI | GGATG | 6 cut(s) | 80, 247, 302, 422, 605, 869 |
| FriOI | GRGCYC | 2 cut(s) | 359, 479 |
| FspBI | CTAG | 4 cut(s) | 341, 461, 573, 915 |
| GlaI | GCGC | 1 cut(s) | 265 |
| GsuI | CTGGAG | 2 cut(s) | 335, 455 |
| HaeIII | GGCC | 3 cut(s) | 93, 774, 878 |
| HapII | CCGG | 5 cut(s) | 128, 204, 359, 479, 720 |
| HhaI | GCGC | 1 cut(s) | 266 |
| Hin1II | CATG | 1 cut(s) | 656 |
| Hin6I | GCGC | 1 cut(s) | 264 |
| HinP1I | GCGC | 1 cut(s) | 264 |
| HincII | GTYRAC | 1 cut(s) | 985 |
| HindII | GTYRAC | 1 cut(s) | 985 |
| HindIII | AAGCTT | 2 cut(s) | 371, 491 |
| HinfI | GANTC | 2 cut(s) | 404, 524 |
| HpaII | CCGG | 5 cut(s) | 128, 204, 359, 479, 720 |
| HphI | GGTGA | 1 cut(s) | 20 |
| Hpy166II | GTNNAC | 3 cut(s) | 86, 762, 985 |
| Hpy188I | TCNGA | 3 cut(s) | 409, 533, 887 |
| Hpy188III | TCNNGA | 5 cut(s) | 204, 314, 332, 434, 452 |
| Hpy8I | GTNNAC | 3 cut(s) | 86, 762, 985 |
| Hpy99I | CGWCG | 2 cut(s) | 277, 940 |
| HpyAV | CCTTC | 3 cut(s) | 204, 224, 804 |
| HpyCH4V | TGCA | 2 cut(s) | 671, 966 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 50, 59, 68, 820 |
| HpyF3I | CTNAG | 5 cut(s) | 63, 107, 279, 513, 694 |
| Hsp92II | CATG | 1 cut(s) | 656 |
| HspAI | GCGC | 1 cut(s) | 264 |
| Kpn2I | TCCGGA | 1 cut(s) | 203 |
| Ksp22I | TGATCA | 1 cut(s) | 247 |
| Kzo9I | GATC | 3 cut(s) | 247, 766, 907 |
| LguI | GCTCTTC | 1 cut(s) | 849 |
| LweI | GCATC | 3 cut(s) | 58, 225, 583 |
| MaeI | CTAG | 4 cut(s) | 341, 461, 573, 915 |
| MaeIII | GTNAC | 3 cut(s) | 318, 438, 562 |
| MalI | GATC | 3 cut(s) | 249, 768, 909 |
| MboI | GATC | 3 cut(s) | 247, 766, 907 |
| MboII | GAAGA | 6 cut(s) | 86, 161, 802, 866, 970, 1010 |
| MfeI | CAATTG | 1 cut(s) | 839 |
| MflI | RGATCY | 1 cut(s) | 907 |
| MhlI | GDGCHC | 2 cut(s) | 359, 479 |
| MlsI | TGGCCA | 1 cut(s) | 774 |
| MluCI | AATT | 6 cut(s) | 148, 536, 673, 728, 839, 867 |
| MluNI | TGGCCA | 1 cut(s) | 774 |
| MmeI | TCCRAC | 1 cut(s) | 203 |
| Mox20I | TGGCCA | 1 cut(s) | 774 |
| Mph1103I | ATGCAT | 1 cut(s) | 968 |
| MroI | TCCGGA | 1 cut(s) | 203 |
| MscI | TGGCCA | 1 cut(s) | 774 |
| MseI | TTAA | 1 cut(s) | 1014 |
| Msp20I | TGGCCA | 1 cut(s) | 774 |
| MspI | CCGG | 5 cut(s) | 128, 204, 359, 479, 720 |
| MspR9I | CCNGG | 3 cut(s) | 128, 359, 479 |
| MunI | CAATTG | 1 cut(s) | 839 |
| Mva1269I | GAATGC | 1 cut(s) | 213 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 50, 59, 68, 820 |
| NciI | CCSGG | 3 cut(s) | 128, 359, 479 |
| NdeII | GATC | 3 cut(s) | 247, 766, 907 |
| NlaIII | CATG | 1 cut(s) | 656 |
| NmeAIII | GCCGAG | 1 cut(s) | 119 |
| NsiI | ATGCAT | 1 cut(s) | 968 |
| PciSI | GCTCTTC | 1 cut(s) | 849 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 944 |
| PctI | GAATGC | 1 cut(s) | 213 |
| PfeI | GAWTC | 2 cut(s) | 404, 524 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 994 |
| PsuI | RGATCY | 1 cut(s) | 907 |
| RsaI | GTAC | 4 cut(s) | 87, 132, 606, 950 |
| RsaNI | GTAC | 4 cut(s) | 86, 131, 605, 949 |
| SalI | GTCGAC | 1 cut(s) | 983 |
| SapI | GCTCTTC | 1 cut(s) | 849 |
| SaqAI | TTAA | 1 cut(s) | 1014 |
| Sau3AI | GATC | 3 cut(s) | 247, 766, 907 |
| ScaI | AGTACT | 1 cut(s) | 606 |
| ScrFI | CCNGG | 3 cut(s) | 128, 359, 479 |
| SduI | GDGCHC | 2 cut(s) | 359, 479 |
| SfaNI | GCATC | 3 cut(s) | 58, 225, 583 |
| SmlI | CTYRAG | 1 cut(s) | 630 |
| SmoI | CTYRAG | 1 cut(s) | 630 |
| Sse9I | AATT | 6 cut(s) | 148, 536, 673, 728, 839, 867 |
| SsiI | CCGC | 3 cut(s) | 51, 71, 596 |
| SspI | AATATT | 1 cut(s) | 28 |
| SspMI | CTAG | 4 cut(s) | 341, 461, 573, 915 |
| StyD4I | CCNGG | 3 cut(s) | 126, 357, 477 |
| StyI | CCWWGG | 2 cut(s) | 156, 988 |
| TaqI | TCGA | 5 cut(s) | 241, 333, 453, 846, 984 |
| TaqII | GACCGA | 2 cut(s) | 517, 928 |
| TasI | AATT | 6 cut(s) | 148, 536, 673, 728, 839, 867 |
| TatI | WGTACW | 2 cut(s) | 85, 604 |
| TfiI | GAWTC | 2 cut(s) | 404, 524 |
| Tru1I | TTAA | 1 cut(s) | 1014 |
| Tru9I | TTAA | 1 cut(s) | 1014 |
| TspDTI | ATGAA | 5 cut(s) | 306, 426, 641, 660, 770 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 994 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 62 |
| XapI | RAATTY | 1 cut(s) | 673 |
| XmiI | GTMKAC | 2 cut(s) | 761, 984 |
| XspI | CTAG | 4 cut(s) | 341, 461, 573, 915 |
| ZrmI | AGTACT | 1 cut(s) | 606 |
| Zsp2I | ATGCAT | 1 cut(s) | 968 |