Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 35 - 154 | 1.7e-23 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 2 cut(s) | 111, 227 |
| AclWI | GGATC | 2 cut(s) | 368, 499 |
| AdeI | CACNNNGTG | 1 cut(s) | 428 |
| AfaI | GTAC | 1 cut(s) | 486 |
| AgeI | ACCGGT | 1 cut(s) | 497 |
| AgsI | TTSAA | 2 cut(s) | 46, 345 |
| AluBI | AGCT | 3 cut(s) | 179, 233, 408 |
| AluI | AGCT | 3 cut(s) | 179, 233, 408 |
| Alw26I | GTCTC | 3 cut(s) | 56, 119, 342 |
| AlwI | GGATC | 2 cut(s) | 368, 499 |
| AoxI | GGCC | 1 cut(s) | 294 |
| ApeKI | GCWGC | 1 cut(s) | 197 |
| AseI | ATTAAT | 1 cut(s) | 314 |
| AsiGI | ACCGGT | 1 cut(s) | 497 |
| AspA2I | CCTAGG | 1 cut(s) | 388 |
| AsuC2I | CCSGG | 3 cut(s) | 167, 202, 489 |
| AsuHPI | GGTGA | 2 cut(s) | 271, 319 |
| AvrII | CCTAGG | 1 cut(s) | 388 |
| BbvI | GCAGC | 1 cut(s) | 209 |
| BccI | CCATC | 2 cut(s) | 141, 332 |
| BcnI | CCSGG | 3 cut(s) | 167, 202, 489 |
| BcoDI | GTCTC | 3 cut(s) | 56, 119, 342 |
| BfaI | CTAG | 2 cut(s) | 389, 452 |
| BfmI | CTRYAG | 1 cut(s) | 234 |
| BisI | GCNGC | 2 cut(s) | 111, 198 |
| BlnI | CCTAGG | 1 cut(s) | 388 |
| BlsI | GCNGC | 2 cut(s) | 112, 199 |
| Bme1390I | CCNGG | 3 cut(s) | 167, 202, 489 |
| BmrFI | CCNGG | 3 cut(s) | 167, 202, 489 |
| BmsI | GCATC | 1 cut(s) | 97 |
| BpuMI | CCSGG | 3 cut(s) | 167, 202, 489 |
| Bsa29I | ATCGAT | 1 cut(s) | 269 |
| BsaBI | GATNNNNATC | 1 cut(s) | 275 |
| BsaJI | CCNNGG | 1 cut(s) | 388 |
| BsaWI | WCCGGW | 1 cut(s) | 497 |
| Bse118I | RCCGGY | 1 cut(s) | 497 |
| Bse8I | GATNNNNATC | 1 cut(s) | 275 |
| BseCI | ATCGAT | 1 cut(s) | 269 |
| BseDI | CCNNGG | 1 cut(s) | 388 |
| BseGI | GGATG | 2 cut(s) | 152, 372 |
| BseJI | GATNNNNATC | 1 cut(s) | 275 |
| BseMII | CTCAG | 2 cut(s) | 312, 324 |
| BseXI | GCAGC | 1 cut(s) | 209 |
| Bsh1285I | CGRYCG | 2 cut(s) | 88, 273 |
| BshFI | GGCC | 1 cut(s) | 296 |
| BshTI | ACCGGT | 1 cut(s) | 497 |
| BshVI | ATCGAT | 1 cut(s) | 269 |
| BsiEI | CGRYCG | 2 cut(s) | 88, 273 |
| BsiSI | CCGG | 4 cut(s) | 167, 202, 489, 498 |
| BsmAI | GTCTC | 3 cut(s) | 56, 119, 342 |
| BsnI | GGCC | 1 cut(s) | 296 |
| Bsp143I | GATC | 4 cut(s) | 85, 270, 360, 491 |
| BspACI | CCGC | 2 cut(s) | 111, 227 |
| BspANI | GGCC | 1 cut(s) | 296 |
| BspCNI | CTCAG | 2 cut(s) | 311, 325 |
| BspDI | ATCGAT | 1 cut(s) | 269 |
| BspPI | GGATC | 2 cut(s) | 368, 499 |
| BsrFI | RCCGGY | 1 cut(s) | 497 |
| BssAI | RCCGGY | 1 cut(s) | 497 |
| BssECI | CCNNGG | 1 cut(s) | 388 |
| BssMI | GATC | 4 cut(s) | 85, 270, 360, 491 |
| BssT1I | CCWWGG | 1 cut(s) | 388 |
| BstDEI | CTNAG | 2 cut(s) | 298, 333 |
| BstF5I | GGATG | 2 cut(s) | 152, 372 |
| BstKTI | GATC | 4 cut(s) | 88, 273, 363, 494 |
| BstMAI | GTCTC | 3 cut(s) | 56, 119, 342 |
| BstMBI | GATC | 4 cut(s) | 85, 270, 360, 491 |
| BstMCI | CGRYCG | 2 cut(s) | 88, 273 |
| BstSCI | CCNGG | 3 cut(s) | 165, 200, 487 |
| BstSFI | CTRYAG | 1 cut(s) | 234 |
| BstV1I | GCAGC | 1 cut(s) | 209 |
| Bsu15I | ATCGAT | 1 cut(s) | 269 |
| BsuRI | GGCC | 1 cut(s) | 296 |
| BsuTUI | ATCGAT | 1 cut(s) | 269 |
| BtsCI | GGATG | 2 cut(s) | 152, 372 |
| Cfr10I | RCCGGY | 1 cut(s) | 497 |
| ClaI | ATCGAT | 1 cut(s) | 269 |
| Csp6I | GTAC | 1 cut(s) | 485 |
| CspAI | ACCGGT | 1 cut(s) | 497 |
| CviAII | CATG | 2 cut(s) | 122, 223 |
| CviJI | RGCY | 7 cut(s) | 141, 179, 200, 233, 296, 323, 408 |
| CviKI_1 | RGCY | 7 cut(s) | 141, 179, 200, 233, 296, 323, 408 |
| CviQI | GTAC | 1 cut(s) | 485 |
| DdeI | CTNAG | 2 cut(s) | 298, 333 |
| DpnI | GATC | 4 cut(s) | 87, 272, 362, 493 |
| DpnII | GATC | 4 cut(s) | 85, 270, 360, 491 |
| DraI | TTTAAA | 1 cut(s) | 504 |
| DraIII | CACNNNGTG | 1 cut(s) | 428 |
| EciI | GGCGGA | 1 cut(s) | 242 |
| Eco130I | CCWWGG | 1 cut(s) | 388 |
| EcoT14I | CCWWGG | 1 cut(s) | 388 |
| ErhI | CCWWGG | 1 cut(s) | 388 |
| FaeI | CATG | 2 cut(s) | 125, 226 |
| FaiI | YATR | 4 cut(s) | 123, 224, 236, 357 |
| FatI | CATG | 2 cut(s) | 121, 222 |
| Fnu4HI | GCNGC | 2 cut(s) | 111, 198 |
| FokI | GGATG | 2 cut(s) | 159, 359 |
| Fsp4HI | GCNGC | 2 cut(s) | 111, 198 |
| FspBI | CTAG | 2 cut(s) | 389, 452 |
| GluI | GCNGC | 2 cut(s) | 111, 198 |
| HaeIII | GGCC | 1 cut(s) | 296 |
| HapII | CCGG | 4 cut(s) | 167, 202, 489, 498 |
| Hin1II | CATG | 2 cut(s) | 125, 226 |
| HinfI | GANTC | 3 cut(s) | 302, 335, 433 |
| HpaII | CCGG | 4 cut(s) | 167, 202, 489, 498 |
| HphI | GGTGA | 2 cut(s) | 271, 319 |
| Hpy188I | TCNGA | 4 cut(s) | 158, 212, 301, 334 |
| Hpy188III | TCNNGA | 1 cut(s) | 77 |
| HpyAV | CCTTC | 2 cut(s) | 80, 351 |
| HpyCH4V | TGCA | 1 cut(s) | 398 |
| HpyF3I | CTNAG | 2 cut(s) | 298, 333 |
| Hsp92II | CATG | 2 cut(s) | 125, 226 |
| Kzo9I | GATC | 4 cut(s) | 85, 270, 360, 491 |
| LpnPI | CCDG | 4 cut(s) | 90, 180, 215, 502 |
| Lsp1109I | GCAGC | 1 cut(s) | 209 |
| LweI | GCATC | 1 cut(s) | 97 |
| MaeI | CTAG | 2 cut(s) | 389, 452 |
| MaeIII | GTNAC | 1 cut(s) | 91 |
| MalI | GATC | 4 cut(s) | 87, 272, 362, 493 |
| MboI | GATC | 4 cut(s) | 85, 270, 360, 491 |
| MboII | GAAGA | 3 cut(s) | 16, 19, 91 |
| MluCI | AATT | 4 cut(s) | 59, 160, 311, 379 |
| MlyI | GAGTC | 1 cut(s) | 344 |
| MnlI | CCTC | 6 cut(s) | 92, 228, 257, 307, 340, 386 |
| MseI | TTAA | 3 cut(s) | 63, 314, 503 |
| MspI | CCGG | 4 cut(s) | 167, 202, 489, 498 |
| MspR9I | CCNGG | 3 cut(s) | 167, 202, 489 |
| MssI | GTTTAAAC | 1 cut(s) | 504 |
| NciI | CCSGG | 3 cut(s) | 167, 202, 489 |
| NdeII | GATC | 4 cut(s) | 85, 270, 360, 491 |
| NlaIII | CATG | 2 cut(s) | 125, 226 |
| NmuCI | GTSAC | 1 cut(s) | 91 |
| PfeI | GAWTC | 2 cut(s) | 302, 433 |
| PinAI | ACCGGT | 1 cut(s) | 497 |
| PkrI | GCNGC | 2 cut(s) | 112, 199 |
| Ple19I | CGATCG | 2 cut(s) | 88, 273 |
| PleI | GAGTC | 1 cut(s) | 343 |
| PmeI | GTTTAAAC | 1 cut(s) | 504 |
| PpsI | GAGTC | 1 cut(s) | 343 |
| PshBI | ATTAAT | 1 cut(s) | 314 |
| PvuI | CGATCG | 2 cut(s) | 88, 273 |
| RsaI | GTAC | 1 cut(s) | 486 |
| RsaNI | GTAC | 1 cut(s) | 485 |
| SaqAI | TTAA | 3 cut(s) | 63, 314, 503 |
| SatI | GCNGC | 2 cut(s) | 111, 198 |
| Sau3AI | GATC | 4 cut(s) | 85, 270, 360, 491 |
| SchI | GAGTC | 1 cut(s) | 344 |
| ScrFI | CCNGG | 3 cut(s) | 167, 202, 489 |
| SetI | ASST | 6 cut(s) | 84, 181, 235, 332, 410, 510 |
| SfaNI | GCATC | 1 cut(s) | 97 |
| SfcI | CTRYAG | 1 cut(s) | 234 |
| Sse9I | AATT | 4 cut(s) | 59, 160, 311, 379 |
| SsiI | CCGC | 2 cut(s) | 111, 227 |
| SspMI | CTAG | 2 cut(s) | 389, 452 |
| StyD4I | CCNGG | 3 cut(s) | 165, 200, 487 |
| StyI | CCWWGG | 1 cut(s) | 388 |
| TaqI | TCGA | 2 cut(s) | 84, 269 |
| TasI | AATT | 4 cut(s) | 59, 160, 311, 379 |
| TauI | GCSGC | 1 cut(s) | 113 |
| TfiI | GAWTC | 2 cut(s) | 302, 433 |
| Tru1I | TTAA | 3 cut(s) | 63, 314, 503 |
| Tru9I | TTAA | 3 cut(s) | 63, 314, 503 |
| TseFI | GTSAC | 1 cut(s) | 91 |
| TseI | GCWGC | 1 cut(s) | 197 |
| Tsp45I | GTSAC | 1 cut(s) | 91 |
| TspDTI | ATGAA | 2 cut(s) | 19, 462 |
| VspI | ATTAAT | 1 cut(s) | 314 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 289 |
| XmaJI | CCTAGG | 1 cut(s) | 388 |
| XspI | CTAG | 2 cut(s) | 389, 452 |