Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 97 - 194 | 2.8e-09 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 173 |
| Acc36I | ACCTGC | 1 cut(s) | 173 |
| AciI | CCGC | 4 cut(s) | 413, 425, 428, 431 |
| AclWI | GGATC | 2 cut(s) | 107, 406 |
| AcoI | YGGCCR | 2 cut(s) | 126, 447 |
| AcsI | RAATTY | 3 cut(s) | 66, 155, 571 |
| AfaI | GTAC | 2 cut(s) | 142, 529 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 255, 272, 371, 595 |
| AflIII | ACRYGT | 1 cut(s) | 530 |
| AgsI | TTSAA | 4 cut(s) | 311, 492, 522, 576 |
| AjnI | CCWGG | 1 cut(s) | 271 |
| AjuI | GAANNNNNNNTTGG | 1 cut(s) | 578 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 298, 330 |
| AluBI | AGCT | 5 cut(s) | 77, 137, 322, 344, 377 |
| AluI | AGCT | 5 cut(s) | 77, 137, 322, 344, 377 |
| Alw26I | GTCTC | 1 cut(s) | 210 |
| AlwI | GGATC | 2 cut(s) | 107, 406 |
| Ama87I | CYCGRG | 1 cut(s) | 479 |
| AoxI | GGCC | 3 cut(s) | 126, 260, 447 |
| ApeKI | GCWGC | 3 cut(s) | 146, 149, 299 |
| ApoI | RAATTY | 3 cut(s) | 66, 155, 571 |
| AspLEI | GCGC | 1 cut(s) | 456 |
| AspS9I | GGNCC | 1 cut(s) | 261 |
| AsuHPI | GGTGA | 2 cut(s) | 31, 154 |
| AsuII | TTCGAA | 1 cut(s) | 317 |
| AvaI | CYCGRG | 1 cut(s) | 479 |
| BalI | TGGCCA | 2 cut(s) | 128, 449 |
| BauI | CACGAG | 1 cut(s) | 345 |
| BbvI | GCAGC | 3 cut(s) | 133, 136, 311 |
| BccI | CCATC | 1 cut(s) | 365 |
| BceAI | ACGGC | 1 cut(s) | 438 |
| BciT130I | CCWGG | 1 cut(s) | 273 |
| BcoDI | GTCTC | 1 cut(s) | 210 |
| BfaI | CTAG | 2 cut(s) | 78, 607 |
| BfmI | CTRYAG | 2 cut(s) | 150, 339 |
| BfuAI | ACCTGC | 1 cut(s) | 173 |
| BisI | GCNGC | 5 cut(s) | 147, 150, 300, 426, 429 |
| BlsI | GCNGC | 5 cut(s) | 148, 151, 301, 427, 430 |
| Bme1390I | CCNGG | 1 cut(s) | 273 |
| BmeT110I | CYCGRG | 1 cut(s) | 479 |
| BmgT120I | GGNCC | 1 cut(s) | 261 |
| BmiI | GGNNCC | 2 cut(s) | 263, 361 |
| BmrFI | CCNGG | 1 cut(s) | 273 |
| BmsI | GCATC | 2 cut(s) | 286, 465 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 250, 282, 532, 564 |
| BpmI | CTGGAG | 1 cut(s) | 202 |
| Bpu14I | TTCGAA | 1 cut(s) | 317 |
| Bsa29I | ATCGAT | 1 cut(s) | 441 |
| BsaJI | CCNNGG | 1 cut(s) | 42 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 255, 272, 371, 595 |
| Bse118I | RCCGGY | 1 cut(s) | 326 |
| BseBI | CCWGG | 1 cut(s) | 273 |
| BseCI | ATCGAT | 1 cut(s) | 441 |
| BseDI | CCNNGG | 1 cut(s) | 42 |
| BseGI | GGATG | 1 cut(s) | 456 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 255, 272, 371, 595 |
| BseRI | GAGGAG | 2 cut(s) | 44, 258 |
| BseXI | GCAGC | 3 cut(s) | 133, 136, 311 |
| BshFI | GGCC | 3 cut(s) | 128, 262, 449 |
| BshVI | ATCGAT | 1 cut(s) | 441 |
| BsiHKCI | CYCGRG | 1 cut(s) | 479 |
| BsiSI | CCGG | 1 cut(s) | 327 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 255, 272, 371, 595 |
| BsmAI | GTCTC | 1 cut(s) | 210 |
| BsmI | GAATGC | 1 cut(s) | 88 |
| BsnI | GGCC | 3 cut(s) | 128, 262, 449 |
| BsoBI | CYCGRG | 1 cut(s) | 479 |
| Bsp119I | TTCGAA | 1 cut(s) | 317 |
| Bsp143I | GATC | 3 cut(s) | 112, 191, 398 |
| BspACI | CCGC | 4 cut(s) | 413, 425, 428, 431 |
| BspANI | GGCC | 3 cut(s) | 128, 262, 449 |
| BspDI | ATCGAT | 1 cut(s) | 441 |
| BspLI | GGNNCC | 2 cut(s) | 263, 361 |
| BspMAI | CTGCAG | 1 cut(s) | 154 |
| BspMI | ACCTGC | 1 cut(s) | 173 |
| BspPI | GGATC | 2 cut(s) | 107, 406 |
| BspT104I | TTCGAA | 1 cut(s) | 317 |
| BsrFI | RCCGGY | 1 cut(s) | 326 |
| BssAI | RCCGGY | 1 cut(s) | 326 |
| BssECI | CCNNGG | 1 cut(s) | 42 |
| BssMI | GATC | 3 cut(s) | 112, 191, 398 |
| BssSI | CACGAG | 1 cut(s) | 345 |
| BssT1I | CCWWGG | 1 cut(s) | 42 |
| Bst2BI | CACGAG | 1 cut(s) | 345 |
| Bst2UI | CCWGG | 1 cut(s) | 273 |
| Bst4CI | ACNGT | 1 cut(s) | 293 |
| BstBI | TTCGAA | 1 cut(s) | 317 |
| BstF5I | GGATG | 1 cut(s) | 456 |
| BstHHI | GCGC | 1 cut(s) | 456 |
| BstKTI | GATC | 3 cut(s) | 115, 194, 401 |
| BstMAI | GTCTC | 1 cut(s) | 210 |
| BstMBI | GATC | 3 cut(s) | 112, 191, 398 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 83, 134, 143, 425, 434 |
| BstNI | CCWGG | 1 cut(s) | 273 |
| BstNSI | RCATGY | 1 cut(s) | 534 |
| BstSCI | CCNGG | 1 cut(s) | 271 |
| BstSFI | CTRYAG | 2 cut(s) | 150, 339 |
| BstV1I | GCAGC | 3 cut(s) | 133, 136, 311 |
| BstX2I | RGATCY | 1 cut(s) | 398 |
| BstYI | RGATCY | 1 cut(s) | 398 |
| Bsu15I | ATCGAT | 1 cut(s) | 441 |
| BsuRI | GGCC | 3 cut(s) | 128, 262, 449 |
| BsuTUI | ATCGAT | 1 cut(s) | 441 |
| BtsCI | GGATG | 1 cut(s) | 456 |
| BveI | ACCTGC | 1 cut(s) | 173 |
| CfoI | GCGC | 1 cut(s) | 456 |
| Cfr10I | RCCGGY | 1 cut(s) | 326 |
| Cfr13I | GGNCC | 1 cut(s) | 261 |
| ClaI | ATCGAT | 1 cut(s) | 441 |
| CseI | GACGC | 1 cut(s) | 235 |
| Csp6I | GTAC | 2 cut(s) | 141, 528 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 105, 140 |
| CviAII | CATG | 5 cut(s) | 184, 303, 356, 531, 591 |
| CviQI | GTAC | 2 cut(s) | 141, 528 |
| DpnI | GATC | 3 cut(s) | 114, 193, 400 |
| DpnII | GATC | 3 cut(s) | 112, 191, 398 |
| EaeI | YGGCCR | 2 cut(s) | 126, 447 |
| EciI | GGCGGA | 1 cut(s) | 428 |
| Eco130I | CCWWGG | 1 cut(s) | 42 |
| Eco88I | CYCGRG | 1 cut(s) | 479 |
| EcoO109I | RGGNCCY | 1 cut(s) | 261 |
| EcoRI | GAATTC | 1 cut(s) | 155 |
| EcoRII | CCWGG | 1 cut(s) | 271 |
| EcoT14I | CCWWGG | 1 cut(s) | 42 |
| ErhI | CCWWGG | 1 cut(s) | 42 |
| FaeI | CATG | 5 cut(s) | 187, 306, 359, 534, 594 |
| FatI | CATG | 5 cut(s) | 183, 302, 355, 530, 590 |
| FauNDI | CATATG | 1 cut(s) | 210 |
| Fnu4HI | GCNGC | 5 cut(s) | 147, 150, 300, 426, 429 |
| FokI | GGATG | 1 cut(s) | 443 |
| Fsp4HI | GCNGC | 5 cut(s) | 147, 150, 300, 426, 429 |
| FspBI | CTAG | 2 cut(s) | 78, 607 |
| GlaI | GCGC | 1 cut(s) | 455 |
| GluI | GCNGC | 5 cut(s) | 147, 150, 300, 426, 429 |
| GsuI | CTGGAG | 1 cut(s) | 202 |
| HaeIII | GGCC | 3 cut(s) | 128, 262, 449 |
| HapII | CCGG | 1 cut(s) | 327 |
| HgaI | GACGC | 1 cut(s) | 235 |
| HhaI | GCGC | 1 cut(s) | 456 |
| Hin1II | CATG | 5 cut(s) | 187, 306, 359, 534, 594 |
| Hin6I | GCGC | 1 cut(s) | 454 |
| HinP1I | GCGC | 1 cut(s) | 454 |
| HindIII | AAGCTT | 1 cut(s) | 320 |
| HinfI | GANTC | 3 cut(s) | 350, 482, 488 |
| HpaII | CCGG | 1 cut(s) | 327 |
| HphI | GGTGA | 2 cut(s) | 31, 154 |
| Hpy166II | GTNNAC | 1 cut(s) | 505 |
| Hpy188I | TCNGA | 1 cut(s) | 487 |
| Hpy188III | TCNNGA | 2 cut(s) | 189, 347 |
| Hpy8I | GTNNAC | 1 cut(s) | 505 |
| Hpy99I | CGWCG | 1 cut(s) | 424 |
| HpyAV | CCTTC | 1 cut(s) | 471 |
| HpyCH4III | ACNGT | 1 cut(s) | 293 |
| HpyCH4V | TGCA | 5 cut(s) | 15, 152, 168, 214, 299 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 83, 134, 143, 425, 434 |
| Hsp92II | CATG | 5 cut(s) | 187, 306, 359, 534, 594 |
| HspAI | GCGC | 1 cut(s) | 454 |
| Kzo9I | GATC | 3 cut(s) | 112, 191, 398 |
| LmnI | GCTCC | 3 cut(s) | 365, 374, 553 |
| LpnPI | CCDG | 7 cut(s) | 123, 178, 232, 236, 258, 285, 340 |
| Lsp1109I | GCAGC | 3 cut(s) | 133, 136, 311 |
| LweI | GCATC | 2 cut(s) | 286, 465 |
| MaeI | CTAG | 2 cut(s) | 78, 607 |
| MalI | GATC | 3 cut(s) | 114, 193, 400 |
| MboI | GATC | 3 cut(s) | 112, 191, 398 |
| MboII | GAAGA | 1 cut(s) | 456 |
| MfeI | CAATTG | 2 cut(s) | 108, 552 |
| MflI | RGATCY | 1 cut(s) | 398 |
| MlsI | TGGCCA | 2 cut(s) | 128, 449 |
| MluNI | TGGCCA | 2 cut(s) | 128, 449 |
| MlyI | GAGTC | 1 cut(s) | 491 |
| MmeI | TCCRAC | 1 cut(s) | 236 |
| MnlI | CCTC | 9 cut(s) | 22, 91, 252, 276, 279, 403, 409, 488, 592 |
| Mox20I | TGGCCA | 2 cut(s) | 128, 449 |
| MscI | TGGCCA | 2 cut(s) | 128, 449 |
| MseI | TTAA | 1 cut(s) | 282 |
| Msp20I | TGGCCA | 2 cut(s) | 128, 449 |
| MspI | CCGG | 1 cut(s) | 327 |
| MspR9I | CCNGG | 1 cut(s) | 273 |
| MunI | CAATTG | 2 cut(s) | 108, 552 |
| Mva1269I | GAATGC | 1 cut(s) | 88 |
| MvaI | CCWGG | 1 cut(s) | 273 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 83, 134, 143, 425, 434 |
| NdeI | CATATG | 1 cut(s) | 210 |
| NdeII | GATC | 3 cut(s) | 112, 191, 398 |
| NlaIII | CATG | 5 cut(s) | 187, 306, 359, 534, 594 |
| NlaIV | GGNNCC | 2 cut(s) | 263, 361 |
| NspI | RCATGY | 1 cut(s) | 534 |
| NspV | TTCGAA | 1 cut(s) | 317 |
| PaeR7I | CTCGAG | 1 cut(s) | 479 |
| PaqCI | CACCTGC | 1 cut(s) | 173 |
| PciI | ACATGT | 1 cut(s) | 530 |
| PctI | GAATGC | 1 cut(s) | 88 |
| PfeI | GAWTC | 2 cut(s) | 350, 488 |
| PflFI | GACNNNGTC | 1 cut(s) | 229 |
| PkrI | GCNGC | 5 cut(s) | 148, 151, 301, 427, 430 |
| PleI | GAGTC | 1 cut(s) | 490 |
| PpsI | GAGTC | 1 cut(s) | 490 |
| PscI | ACATGT | 1 cut(s) | 530 |
| Psp6I | CCWGG | 1 cut(s) | 271 |
| PspGI | CCWGG | 1 cut(s) | 271 |
| PspN4I | GGNNCC | 2 cut(s) | 263, 361 |
| PspPI | GGNCC | 1 cut(s) | 261 |
| PspXI | VCTCGAGB | 1 cut(s) | 479 |
| PstI | CTGCAG | 1 cut(s) | 154 |
| PsuI | RGATCY | 1 cut(s) | 398 |
| PsyI | GACNNNGTC | 1 cut(s) | 229 |
| RsaI | GTAC | 2 cut(s) | 142, 529 |
| RsaNI | GTAC | 2 cut(s) | 141, 528 |
| SaqAI | TTAA | 1 cut(s) | 282 |
| SatI | GCNGC | 5 cut(s) | 147, 150, 300, 426, 429 |
| Sau3AI | GATC | 3 cut(s) | 112, 191, 398 |
| Sau96I | GGNCC | 1 cut(s) | 261 |
| SchI | GAGTC | 1 cut(s) | 491 |
| ScrFI | CCNGG | 1 cut(s) | 273 |
| SetI | ASST | 9 cut(s) | 48, 79, 139, 167, 324, 346, 379, 383, 584 |
| SfaNI | GCATC | 2 cut(s) | 286, 465 |
| SfcI | CTRYAG | 2 cut(s) | 150, 339 |
| Sfr274I | CTCGAG | 1 cut(s) | 479 |
| SfuI | TTCGAA | 1 cut(s) | 317 |
| SlaI | CTCGAG | 1 cut(s) | 479 |
| SmlI | CTYRAG | 1 cut(s) | 479 |
| SmoI | CTYRAG | 1 cut(s) | 479 |
| SsiI | CCGC | 4 cut(s) | 413, 425, 428, 431 |
| SspMI | CTAG | 2 cut(s) | 78, 607 |
| StyD4I | CCNGG | 1 cut(s) | 271 |
| StyI | CCWWGG | 1 cut(s) | 42 |
| TaaI | ACNGT | 1 cut(s) | 293 |
| TaqI | TCGA | 4 cut(s) | 317, 441, 480, 584 |
| TatI | WGTACW | 1 cut(s) | 527 |
| TauI | GCSGC | 2 cut(s) | 428, 431 |
| TfiI | GAWTC | 2 cut(s) | 350, 488 |
| Tru1I | TTAA | 1 cut(s) | 282 |
| Tru9I | TTAA | 1 cut(s) | 282 |
| TseI | GCWGC | 3 cut(s) | 146, 149, 299 |
| TspDTI | ATGAA | 1 cut(s) | 148 |
| Tth111I | GACNNNGTC | 1 cut(s) | 229 |
| XapI | RAATTY | 3 cut(s) | 66, 155, 571 |
| XceI | RCATGY | 1 cut(s) | 534 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 597 |
| XhoI | CTCGAG | 1 cut(s) | 479 |
| XspI | CTAG | 2 cut(s) | 78, 607 |