Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 34 - 138 | 9.8e-22 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 172 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 16, 80 |
| AgsI | TTSAA | 2 cut(s) | 93, 277 |
| AluBI | AGCT | 2 cut(s) | 188, 224 |
| AluI | AGCT | 2 cut(s) | 188, 224 |
| Alw26I | GTCTC | 1 cut(s) | 321 |
| AoxI | GGCC | 2 cut(s) | 82, 405 |
| ApeKI | GCWGC | 2 cut(s) | 49, 260 |
| ApoI | RAATTY | 1 cut(s) | 172 |
| AspS9I | GGNCC | 3 cut(s) | 7, 69, 406 |
| AvaII | GGWCC | 2 cut(s) | 7, 69 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 184, 216 |
| BbvI | GCAGC | 2 cut(s) | 61, 247 |
| BccI | CCATC | 1 cut(s) | 101 |
| BcoDI | GTCTC | 1 cut(s) | 321 |
| BfaI | CTAG | 2 cut(s) | 189, 290 |
| BisI | GCNGC | 2 cut(s) | 50, 261 |
| BlsI | GCNGC | 2 cut(s) | 51, 262 |
| Bme18I | GGWCC | 2 cut(s) | 7, 69 |
| BmgT120I | GGNCC | 3 cut(s) | 7, 69, 406 |
| BmiI | GGNNCC | 2 cut(s) | 71, 408 |
| BpmI | CTGGAG | 2 cut(s) | 204, 370 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 16, 80 |
| Bse1I | ACTGG | 2 cut(s) | 85, 353 |
| BseGI | GGATG | 2 cut(s) | 40, 112 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 16, 80 |
| BseMII | CTCAG | 2 cut(s) | 317, 423 |
| BseNI | ACTGG | 2 cut(s) | 85, 353 |
| BseXI | GCAGC | 2 cut(s) | 61, 247 |
| BsgI | GTGCAG | 2 cut(s) | 68, 246 |
| BshFI | GGCC | 2 cut(s) | 84, 407 |
| BslFI | GGGAC | 2 cut(s) | 55, 131 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 16, 80 |
| BsmAI | GTCTC | 1 cut(s) | 321 |
| BsmFI | GGGAC | 2 cut(s) | 55, 131 |
| BsmI | GAATGC | 1 cut(s) | 340 |
| BsnI | GGCC | 2 cut(s) | 84, 407 |
| BspANI | GGCC | 2 cut(s) | 84, 407 |
| BspCNI | CTCAG | 2 cut(s) | 316, 424 |
| BspLI | GGNNCC | 2 cut(s) | 71, 408 |
| BsrI | ACTGG | 2 cut(s) | 85, 353 |
| BstDEI | CTNAG | 3 cut(s) | 303, 323, 432 |
| BstF5I | GGATG | 2 cut(s) | 40, 112 |
| BstMAI | GTCTC | 1 cut(s) | 321 |
| BstNSI | RCATGY | 1 cut(s) | 56 |
| BstV1I | GCAGC | 2 cut(s) | 61, 247 |
| BsuRI | GGCC | 2 cut(s) | 84, 407 |
| BtsCI | GGATG | 2 cut(s) | 40, 112 |
| BtsI | GCAGTG | 1 cut(s) | 243 |
| BtsIMutI | CAGTG | 2 cut(s) | 78, 243 |
| Cfr13I | GGNCC | 3 cut(s) | 7, 69, 406 |
| CviAII | CATG | 2 cut(s) | 53, 245 |
| CviJI | RGCY | 7 cut(s) | 84, 141, 182, 188, 224, 288, 407 |
| CviKI_1 | RGCY | 7 cut(s) | 84, 141, 182, 188, 224, 288, 407 |
| DdeI | CTNAG | 3 cut(s) | 303, 323, 432 |
| Eco32I | GATATC | 1 cut(s) | 357 |
| Eco47I | GGWCC | 2 cut(s) | 7, 69 |
| EcoRI | GAATTC | 1 cut(s) | 172 |
| EcoRV | GATATC | 1 cut(s) | 357 |
| FaeI | CATG | 2 cut(s) | 56, 248 |
| FaiI | YATR | 8 cut(s) | 12, 54, 165, 207, 246, 284, 309, 395 |
| FaqI | GGGAC | 2 cut(s) | 55, 131 |
| FatI | CATG | 2 cut(s) | 52, 244 |
| Fnu4HI | GCNGC | 2 cut(s) | 50, 261 |
| FokI | GGATG | 2 cut(s) | 47, 119 |
| Fsp4HI | GCNGC | 2 cut(s) | 50, 261 |
| FspBI | CTAG | 2 cut(s) | 189, 290 |
| GluI | GCNGC | 2 cut(s) | 50, 261 |
| GsuI | CTGGAG | 2 cut(s) | 204, 370 |
| HaeIII | GGCC | 2 cut(s) | 84, 407 |
| Hin1II | CATG | 2 cut(s) | 56, 248 |
| HinfI | GANTC | 2 cut(s) | 299, 329 |
| Hpy188I | TCNGA | 2 cut(s) | 158, 433 |
| HpyAV | CCTTC | 2 cut(s) | 271, 421 |
| HpyCH4V | TGCA | 4 cut(s) | 49, 123, 236, 263 |
| HpyF3I | CTNAG | 3 cut(s) | 303, 323, 432 |
| Hsp92II | CATG | 2 cut(s) | 56, 248 |
| LmnI | GCTCC | 1 cut(s) | 185 |
| LpnPI | CCDG | 5 cut(s) | 12, 48, 66, 168, 334 |
| Lsp1109I | GCAGC | 2 cut(s) | 61, 247 |
| MaeI | CTAG | 2 cut(s) | 189, 290 |
| MaeIII | GTNAC | 1 cut(s) | 296 |
| MboII | GAAGA | 1 cut(s) | 406 |
| MluCI | AATT | 2 cut(s) | 172, 208 |
| MlyI | GAGTC | 2 cut(s) | 293, 323 |
| MnlI | CCTC | 8 cut(s) | 13, 25, 84, 95, 161, 211, 345, 366 |
| MseI | TTAA | 1 cut(s) | 399 |
| Mva1269I | GAATGC | 1 cut(s) | 340 |
| NlaIII | CATG | 2 cut(s) | 56, 248 |
| NlaIV | GGNNCC | 2 cut(s) | 71, 408 |
| NmeAIII | GCCGAG | 1 cut(s) | 383 |
| NmuCI | GTSAC | 1 cut(s) | 296 |
| NspI | RCATGY | 1 cut(s) | 56 |
| PctI | GAATGC | 1 cut(s) | 340 |
| PkrI | GCNGC | 2 cut(s) | 51, 262 |
| PleI | GAGTC | 2 cut(s) | 293, 323 |
| PpsI | GAGTC | 2 cut(s) | 293, 323 |
| PspN4I | GGNNCC | 2 cut(s) | 71, 408 |
| PspPI | GGNCC | 3 cut(s) | 7, 69, 406 |
| SaqAI | TTAA | 1 cut(s) | 399 |
| SatI | GCNGC | 2 cut(s) | 50, 261 |
| Sau96I | GGNCC | 3 cut(s) | 7, 69, 406 |
| SchI | GAGTC | 2 cut(s) | 293, 323 |
| SetI | ASST | 3 cut(s) | 9, 190, 226 |
| SinI | GGWCC | 2 cut(s) | 7, 69 |
| Sse9I | AATT | 2 cut(s) | 172, 208 |
| SspMI | CTAG | 2 cut(s) | 189, 290 |
| TaqI | TCGA | 2 cut(s) | 332, 371 |
| TasI | AATT | 2 cut(s) | 172, 208 |
| Tru1I | TTAA | 1 cut(s) | 399 |
| Tru9I | TTAA | 1 cut(s) | 399 |
| TscAI | CASTG | 2 cut(s) | 85, 243 |
| TseFI | GTSAC | 1 cut(s) | 296 |
| TseI | GCWGC | 2 cut(s) | 49, 260 |
| Tsp45I | GTSAC | 1 cut(s) | 296 |
| TspRI | CASTG | 2 cut(s) | 85, 243 |
| VpaK11BI | GGWCC | 2 cut(s) | 7, 69 |
| XapI | RAATTY | 1 cut(s) | 172 |
| XceI | RCATGY | 1 cut(s) | 56 |
| XspI | CTAG | 2 cut(s) | 189, 290 |