Rmu_sc0006889.1_g000013

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006889.1
OG0000093
Physical Location & Seq
Forward (+)
38765 .. 40488
1724 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006889.1_g000013.1.cds

Sequence Viewer

Length: 654 bp
atggtgaaggaattaattgactgggatactaggtcttggaagcctgataggatcagtgacctaatttctgaggacgaccttttggatattgagttgatagctttgggtgaccagtctttgatggacaaaattatttggcctctgtcaaaaagtggccaatactcgtgtcctggtgcaatgtgtgtttggtttgcttctgatttaaactacaagatcaatctgcaagccattagtacttttgatttgtggtttgagaacattattctcataatggatggttgcaaaacaattagagaggagtttcttaccaaagttgtttttctcctctgggaaatttggaaagctaggaatgcttatgtttatgaggcagtcccaattgatccaagtttggtggccaagagagctggacgaggtctacataggaggcagaggcgatggcggcagcagtggctatcgatgaattctattacctcaaatgcgcgtttcgcttggttttggaatccaagaaaagcgaacattgcagttgatttggttgcctcgctagtagtgaggaagaagtgcccggaggtttggattgaccggccaccttcttccctcgtgcatgtcatttctcgcgacggtcttccttgcccaccctttcaaaatgatcaatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04144 map04144
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

217

Amino Acids

25.31

Weight (kDa)

8.26

Isoelectric Point (pI)

50.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 415
AccII CGCG 2 cut(s) 481, 615
AciI CCGC 1 cut(s) 439
AclWI GGATC 2 cut(s) 59, 374
AcoI YGGCCR 3 cut(s) 154, 393, 581
AcsI RAATTY 2 cut(s) 333, 460
AfaI GTAC 1 cut(s) 235
AgsI TTSAA 1 cut(s) 641
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 3 cut(s) 101, 344, 404
AluI AGCT 3 cut(s) 101, 344, 404
AlwI GGATC 2 cut(s) 59, 374
AoxI GGCC 4 cut(s) 137, 154, 393, 581
ApeKI GCWGC 1 cut(s) 442
ApoI RAATTY 2 cut(s) 333, 460
AseI ATTAAT 1 cut(s) 14
AspLEI GCGC 1 cut(s) 481
AsuC2I CCSGG 1 cut(s) 563
AsuHPI GGTGA 2 cut(s) 16, 119
BaeGI GKGCMC 1 cut(s) 563
BalI TGGCCA 2 cut(s) 156, 395
BauI CACGAG 2 cut(s) 163, 596
BbsI GAAGAC 1 cut(s) 614
BbvI GCAGC 1 cut(s) 454
BccI CCATC 3 cut(s) 115, 269, 429
BciT130I CCWGG 1 cut(s) 171
BciVI GTATCC 1 cut(s) 19
BclI TGATCA 1 cut(s) 646
BcnI CCSGG 1 cut(s) 563
BfaI CTAG 3 cut(s) 30, 345, 542
BfuI GTATCC 1 cut(s) 19
BisI GCNGC 2 cut(s) 440, 443
BlsI GCNGC 2 cut(s) 441, 444
BmcAI AGTACT 1 cut(s) 235
Bme1390I CCNGG 2 cut(s) 171, 563
BmrFI CCNGG 2 cut(s) 171, 563
BmrI ACTGGG 1 cut(s) 31
BmuI ACTGGG 1 cut(s) 31
BpiI GAAGAC 1 cut(s) 614
BpuMI CCSGG 1 cut(s) 563
Bsa29I ATCGAT 1 cut(s) 455
Bse118I RCCGGY 1 cut(s) 579
Bse1I ACTGG 2 cut(s) 26, 112
Bse3DI GCAATG 2 cut(s) 183, 516
BseBI CCWGG 1 cut(s) 171
BseCI ATCGAT 1 cut(s) 455
BseGI GGATG 1 cut(s) 280
BseMI GCAATG 2 cut(s) 183, 516
BseMII CTCAG 1 cut(s) 60
BseNI ACTGG 2 cut(s) 26, 112
BseRI GAGGAG 2 cut(s) 311, 314
BseSI GKGCMC 1 cut(s) 563
BseXI GCAGC 1 cut(s) 454
Bsh1236I CGCG 2 cut(s) 481, 615
BshFI GGCC 4 cut(s) 139, 156, 395, 583
BshVI ATCGAT 1 cut(s) 455
BsiSI CCGG 2 cut(s) 563, 580
BslFI GGGAC 1 cut(s) 356
BsmFI GGGAC 1 cut(s) 356
BsmI GAATGC 1 cut(s) 355
BsnI GGCC 4 cut(s) 139, 156, 395, 583
Bsp1286I GDGCHC 1 cut(s) 563
Bsp143I GATC 4 cut(s) 51, 213, 379, 646
Bsp68I TCGCGA 1 cut(s) 615
BspACI CCGC 1 cut(s) 439
BspANI GGCC 4 cut(s) 139, 156, 395, 583
BspCNI CTCAG 1 cut(s) 61
BspDI ATCGAT 1 cut(s) 455
BspFNI CGCG 2 cut(s) 481, 615
BspPI GGATC 2 cut(s) 59, 374
BsrDI GCAATG 2 cut(s) 183, 516
BsrFI RCCGGY 1 cut(s) 579
BsrI ACTGG 2 cut(s) 26, 112
BssAI RCCGGY 1 cut(s) 579
BssMI GATC 4 cut(s) 51, 213, 379, 646
BssSI CACGAG 2 cut(s) 163, 596
Bst2BI CACGAG 2 cut(s) 163, 596
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 1 cut(s) 620
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 69
BstEII GGTNACC 1 cut(s) 107
BstF5I GGATG 1 cut(s) 280
BstFNI CGCG 2 cut(s) 481, 615
BstHHI GCGC 1 cut(s) 481
BstKTI GATC 4 cut(s) 54, 216, 382, 649
BstMBI GATC 4 cut(s) 51, 213, 379, 646
BstMWI GCNNNNNNNGC 6 cut(s) 350, 401, 439, 448, 485, 518
BstNI CCWGG 1 cut(s) 171
BstNSI RCATGY 1 cut(s) 605
BstPI GGTNACC 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 169, 561
BstSLI GKGCMC 1 cut(s) 563
BstUI CGCG 2 cut(s) 481, 615
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 1 cut(s) 614
Bsu15I ATCGAT 1 cut(s) 455
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 4 cut(s) 139, 156, 395, 583
BsuTUI ATCGAT 1 cut(s) 455
BtgZI GCGATG 1 cut(s) 448
BtsCI GGATG 1 cut(s) 280
BtsI GCAGTG 1 cut(s) 452
BtsIMutI CAGTG 2 cut(s) 61, 452
BtuMI TCGCGA 1 cut(s) 615
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 481
Cfr10I RCCGGY 1 cut(s) 579
ClaI ATCGAT 1 cut(s) 455
Csp6I GTAC 1 cut(s) 234
CspCI CAANNNNNGTGG 2 cut(s) 372, 407
CviAII CATG 1 cut(s) 602
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 1 cut(s) 69
DpnI GATC 4 cut(s) 53, 215, 381, 648
DpnII GATC 4 cut(s) 51, 213, 379, 646
DraI TTTAAA 1 cut(s) 204
EaeI YGGCCR 3 cut(s) 154, 393, 581
Eco91I GGTNACC 1 cut(s) 107
EcoO65I GGTNACC 1 cut(s) 107
EcoRI GAATTC 1 cut(s) 460
EcoRII CCWGG 1 cut(s) 169
FaeI CATG 1 cut(s) 605
FaiI YATR 5 cut(s) 269, 357, 363, 420, 603
FaqI GGGAC 1 cut(s) 356
FatI CATG 1 cut(s) 601
FbaI TGATCA 1 cut(s) 646
FblI GTMKAC 1 cut(s) 415
Fnu4HI GCNGC 2 cut(s) 440, 443
FokI GGATG 1 cut(s) 287
Fsp4HI GCNGC 2 cut(s) 440, 443
FspBI CTAG 3 cut(s) 30, 345, 542
GlaI GCGC 1 cut(s) 480
GluI GCNGC 2 cut(s) 440, 443
HaeIII GGCC 4 cut(s) 139, 156, 395, 583
HapII CCGG 2 cut(s) 563, 580
HhaI GCGC 1 cut(s) 481
Hin1II CATG 1 cut(s) 605
Hin6I GCGC 1 cut(s) 479
HinP1I GCGC 1 cut(s) 479
HinfI GANTC 1 cut(s) 499
HpaII CCGG 2 cut(s) 563, 580
HphI GGTGA 2 cut(s) 16, 119
Hpy166II GTNNAC 1 cut(s) 416
Hpy188I TCNGA 2 cut(s) 70, 199
Hpy188III TCNNGA 1 cut(s) 614
Hpy8I GTNNAC 1 cut(s) 416
Hpy99I CGWCG 1 cut(s) 620
HpyAV CCTTC 1 cut(s) 597
HpyCH4III ACNGT 1 cut(s) 620
HpyCH4V TGCA 5 cut(s) 176, 223, 282, 521, 601
HpyF10VI GCNNNNNNNGC 6 cut(s) 350, 401, 439, 448, 485, 518
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 1 cut(s) 605
HspAI GCGC 1 cut(s) 479
Ksp22I TGATCA 1 cut(s) 646
Kzo9I GATC 4 cut(s) 51, 213, 379, 646
LpnPI CCDG 9 cut(s) 7, 57, 125, 156, 183, 313, 390, 576, 593
Lsp1109I GCAGC 1 cut(s) 454
MaeI CTAG 3 cut(s) 30, 345, 542
MaeIII GTNAC 2 cut(s) 56, 107
MalI GATC 4 cut(s) 53, 215, 381, 648
MboI GATC 4 cut(s) 51, 213, 379, 646
MboII GAAGA 3 cut(s) 565, 582, 614
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 563
MlsI TGGCCA 2 cut(s) 156, 395
MluCI AATT 8 cut(s) 11, 15, 63, 129, 288, 333, 375, 460
MluNI TGGCCA 2 cut(s) 156, 395
Mox20I TGGCCA 2 cut(s) 156, 395
MscI TGGCCA 2 cut(s) 156, 395
MseI TTAA 2 cut(s) 14, 203
Msp20I TGGCCA 2 cut(s) 156, 395
MspI CCGG 2 cut(s) 563, 580
MspR9I CCNGG 2 cut(s) 171, 563
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 355
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 2 cut(s) 481, 615
MwoI GCNNNNNNNGC 6 cut(s) 350, 401, 439, 448, 485, 518
NciI CCSGG 1 cut(s) 563
NdeII GATC 4 cut(s) 51, 213, 379, 646
NlaIII CATG 1 cut(s) 605
NmuCI GTSAC 2 cut(s) 56, 107
NruI TCGCGA 1 cut(s) 615
NspI RCATGY 1 cut(s) 605
PctI GAATGC 1 cut(s) 355
PfeI GAWTC 1 cut(s) 499
PflFI GACNNNGTC 1 cut(s) 411
PkrI GCNGC 2 cut(s) 441, 444
PshBI ATTAAT 1 cut(s) 14
Psp6I CCWGG 1 cut(s) 169
PspEI GGTNACC 1 cut(s) 107
PspGI CCWGG 1 cut(s) 169
PsyI GACNNNGTC 1 cut(s) 411
RruI TCGCGA 1 cut(s) 615
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 2 cut(s) 14, 203
SatI GCNGC 2 cut(s) 440, 443
Sau3AI GATC 4 cut(s) 51, 213, 379, 646
ScaI AGTACT 1 cut(s) 235
ScrFI CCNGG 2 cut(s) 171, 563
SduI GDGCHC 1 cut(s) 563
Sse9I AATT 8 cut(s) 11, 15, 63, 129, 288, 333, 375, 460
SsiI CCGC 1 cut(s) 439
SspMI CTAG 3 cut(s) 30, 345, 542
StyD4I CCNGG 2 cut(s) 169, 561
TaaI ACNGT 1 cut(s) 620
TaqI TCGA 1 cut(s) 455
TasI AATT 8 cut(s) 11, 15, 63, 129, 288, 333, 375, 460
TatI WGTACW 1 cut(s) 233
TauI GCSGC 1 cut(s) 442
TfiI GAWTC 1 cut(s) 499
Tru1I TTAA 2 cut(s) 14, 203
Tru9I TTAA 2 cut(s) 14, 203
TscAI CASTG 2 cut(s) 61, 452
TseFI GTSAC 2 cut(s) 56, 107
TseI GCWGC 1 cut(s) 442
Tsp45I GTSAC 2 cut(s) 56, 107
TspDTI ATGAA 1 cut(s) 473
TspRI CASTG 2 cut(s) 61, 452
Tth111I GACNNNGTC 1 cut(s) 411
VspI ATTAAT 1 cut(s) 14
XapI RAATTY 2 cut(s) 333, 460
XceI RCATGY 1 cut(s) 605
XmiI GTMKAC 1 cut(s) 415
XspI CTAG 3 cut(s) 30, 345, 542
ZrmI AGTACT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.