Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| RVT_3 | PF13456 | 71 - 148 | 1.2e-10 | Reverse transcriptase-like |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 332 |
| AcsI | RAATTY | 1 cut(s) | 235 |
| AcuI | CTGAAG | 1 cut(s) | 116 |
| AgsI | TTSAA | 2 cut(s) | 120, 205 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 178 |
| AluBI | AGCT | 2 cut(s) | 340, 379 |
| AluI | AGCT | 2 cut(s) | 340, 379 |
| Alw21I | GWGCWC | 1 cut(s) | 342 |
| Alw26I | GTCTC | 2 cut(s) | 186, 247 |
| ApeKI | GCWGC | 1 cut(s) | 89 |
| ApoI | RAATTY | 1 cut(s) | 235 |
| AsuHPI | GGTGA | 1 cut(s) | 35 |
| BanII | GRGCYC | 1 cut(s) | 342 |
| Bbv12I | GWGCWC | 1 cut(s) | 342 |
| BbvI | GCAGC | 1 cut(s) | 76 |
| BccI | CCATC | 1 cut(s) | 287 |
| BcoDI | GTCTC | 2 cut(s) | 186, 247 |
| BfaI | CTAG | 1 cut(s) | 329 |
| BisI | GCNGC | 2 cut(s) | 90, 333 |
| BlpI | GCTNAGC | 1 cut(s) | 336 |
| BlsI | GCNGC | 2 cut(s) | 91, 334 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 178 |
| BmsI | GCATC | 3 cut(s) | 208, 413, 453 |
| BpmI | CTGGAG | 1 cut(s) | 297 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 336 |
| BpuEI | CTTGAG | 1 cut(s) | 438 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 166, 196 |
| BseGI | GGATG | 1 cut(s) | 444 |
| BseMII | CTCAG | 1 cut(s) | 327 |
| BseRI | GAGGAG | 2 cut(s) | 174, 441 |
| BseXI | GCAGC | 1 cut(s) | 76 |
| BsiHKAI | GWGCWC | 1 cut(s) | 342 |
| BsmAI | GTCTC | 2 cut(s) | 186, 247 |
| BsmBI | CGTCTC | 1 cut(s) | 247 |
| Bsp1286I | GDGCHC | 1 cut(s) | 342 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 336 |
| BspACI | CCGC | 1 cut(s) | 332 |
| BspCNI | CTCAG | 1 cut(s) | 328 |
| BstDEI | CTNAG | 1 cut(s) | 336 |
| BstF5I | GGATG | 1 cut(s) | 444 |
| BstMAI | GTCTC | 2 cut(s) | 186, 247 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 77, 86 |
| BstV1I | GCAGC | 1 cut(s) | 76 |
| BtsCI | GGATG | 1 cut(s) | 444 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 151, 186 |
| CviAII | CATG | 2 cut(s) | 73, 397 |
| CviJI | RGCY | 9 cut(s) | 71, 89, 136, 317, 335, 340, 360, 379, 431 |
| CviKI_1 | RGCY | 9 cut(s) | 71, 89, 136, 317, 335, 340, 360, 379, 431 |
| DdeI | CTNAG | 1 cut(s) | 336 |
| DriI | GACNNNNNGTC | 1 cut(s) | 178 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 178 |
| Ecl136II | GAGCTC | 1 cut(s) | 340 |
| Eco24I | GRGCYC | 1 cut(s) | 342 |
| Eco53kI | GAGCTC | 1 cut(s) | 340 |
| Eco57I | CTGAAG | 1 cut(s) | 116 |
| EcoICRI | GAGCTC | 1 cut(s) | 340 |
| EcoT38I | GRGCYC | 1 cut(s) | 342 |
| Esp3I | CGTCTC | 1 cut(s) | 247 |
| FaeI | CATG | 2 cut(s) | 76, 400 |
| FaiI | YATR | 5 cut(s) | 65, 74, 157, 278, 398 |
| FatI | CATG | 2 cut(s) | 72, 396 |
| Fnu4HI | GCNGC | 2 cut(s) | 90, 333 |
| FokI | GGATG | 1 cut(s) | 431 |
| FriOI | GRGCYC | 1 cut(s) | 342 |
| Fsp4HI | GCNGC | 2 cut(s) | 90, 333 |
| FspBI | CTAG | 1 cut(s) | 329 |
| GluI | GCNGC | 2 cut(s) | 90, 333 |
| GsuI | CTGGAG | 1 cut(s) | 297 |
| Hin1II | CATG | 2 cut(s) | 76, 400 |
| HindIII | AAGCTT | 1 cut(s) | 377 |
| HinfI | GANTC | 1 cut(s) | 410 |
| HphI | GGTGA | 1 cut(s) | 35 |
| Hpy166II | GTNNAC | 1 cut(s) | 211 |
| Hpy188I | TCNGA | 1 cut(s) | 409 |
| Hpy188III | TCNNGA | 3 cut(s) | 95, 104, 455 |
| Hpy8I | GTNNAC | 1 cut(s) | 211 |
| HpyAV | CCTTC | 2 cut(s) | 126, 350 |
| HpyCH4V | TGCA | 3 cut(s) | 257, 347, 374 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 77, 86 |
| HpyF3I | CTNAG | 1 cut(s) | 336 |
| Hsp92II | CATG | 2 cut(s) | 76, 400 |
| LmnI | GCTCC | 1 cut(s) | 345 |
| LpnPI | CCDG | 6 cut(s) | 80, 204, 231, 327, 413, 426 |
| Lsp1109I | GCAGC | 1 cut(s) | 76 |
| LweI | GCATC | 3 cut(s) | 208, 413, 453 |
| MaeI | CTAG | 1 cut(s) | 329 |
| MboII | GAAGA | 1 cut(s) | 294 |
| MhlI | GDGCHC | 1 cut(s) | 342 |
| MluCI | AATT | 2 cut(s) | 235, 285 |
| MnlI | CCTC | 5 cut(s) | 157, 195, 393, 459, 462 |
| MseI | TTAA | 2 cut(s) | 39, 125 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 77, 86 |
| NlaIII | CATG | 2 cut(s) | 76, 400 |
| PfeI | GAWTC | 1 cut(s) | 410 |
| PkrI | GCNGC | 2 cut(s) | 91, 334 |
| Psp124BI | GAGCTC | 1 cut(s) | 342 |
| SacI | GAGCTC | 1 cut(s) | 342 |
| SaqAI | TTAA | 2 cut(s) | 39, 125 |
| SatI | GCNGC | 2 cut(s) | 90, 333 |
| SduI | GDGCHC | 1 cut(s) | 342 |
| SetI | ASST | 3 cut(s) | 179, 342, 381 |
| SfaNI | GCATC | 3 cut(s) | 208, 413, 453 |
| SmlI | CTYRAG | 1 cut(s) | 453 |
| SmoI | CTYRAG | 1 cut(s) | 453 |
| Sse9I | AATT | 2 cut(s) | 235, 285 |
| SsiI | CCGC | 1 cut(s) | 332 |
| SspMI | CTAG | 1 cut(s) | 329 |
| SstI | GAGCTC | 1 cut(s) | 342 |
| TaqII | GACCGA | 1 cut(s) | 382 |
| TasI | AATT | 2 cut(s) | 235, 285 |
| TauI | GCSGC | 1 cut(s) | 335 |
| TfiI | GAWTC | 1 cut(s) | 410 |
| Tru1I | TTAA | 2 cut(s) | 39, 125 |
| Tru9I | TTAA | 2 cut(s) | 39, 125 |
| TseI | GCWGC | 1 cut(s) | 89 |
| TspDTI | ATGAA | 3 cut(s) | 89, 144, 246 |
| TspGWI | ACGGA | 1 cut(s) | 229 |
| XapI | RAATTY | 1 cut(s) | 235 |
| XspI | CTAG | 1 cut(s) | 329 |