Prupe.8G036100_v2.0.a1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0000093
Physical Location & Seq
Reverse (-)
3302276 .. 3302895
620 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G036100.1

Sequence Viewer

Length: 450 bp
ATGACGAACCCAAAGGAGAAGAAACTAAGAAATAGGGTGGTGTTTGACAATTTCACACCCCAACTCCAGCAAACCTTCAAGGCCATTTTCGACCAGGTAAATGAAAGATTCTCTCTAAAGCATCTAATCACCCCTTCCACCACAAGATCAGTTCATCCCTCTGCCCAGGCGCCTTGGGCAGCCCCTGCTGAGCCTTTTGTCAAAATAAATGTTGATGCCGCTTGGAGGAAAAGCACATGTCGTGCGGGGGCTGGCATAGTTATTCGAAACTTTGAAGGAAGATTTCTTGGGGCCAAATCTGTGGATTTTCAAGCGGAGAATGCTCTTATTGCTGAGGCAACAGCATTATGGGAGGGCTGCAAATTTGCTAAGGAGCGGGGTCACAACATGGTCTGTTTCGAGTCAGATTCTTTGGAGCTTATCAAAAGTGTTCGTGGCTCTTTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

150

Amino Acids

16.72

Weight (kDa)

9.39

Isoelectric Point (pI)

23.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AccBSI CCGCTC 1 cut(s) 376
AciI CCGC 4 cut(s) 219, 245, 314, 376
AcsI RAATTY 1 cut(s) 362
AcyI GRCGYC 1 cut(s) 170
AfiI CCNNNNNNNGG 1 cut(s) 225
AflIII ACRYGT 1 cut(s) 236
AgsI TTSAA 3 cut(s) 79, 275, 311
AjnI CCWGG 2 cut(s) 93, 165
AluBI AGCT 1 cut(s) 418
AluI AGCT 1 cut(s) 418
AlwNI CAGNNNCTG 1 cut(s) 185
AoxI GGCC 2 cut(s) 81, 291
ApeKI GCWGC 2 cut(s) 179, 357
ApoI RAATTY 1 cut(s) 362
AspLEI GCGC 1 cut(s) 172
AspS9I GGNCC 1 cut(s) 291
AsuHPI GGTGA 1 cut(s) 121
AsuII TTCGAA 1 cut(s) 265
BanI GGYRCC 1 cut(s) 169
BbvCI CCTCAGC 1 cut(s) 333
BbvI GCAGC 2 cut(s) 191, 344
BciT130I CCWGG 2 cut(s) 95, 167
BfoI RGCGCY 1 cut(s) 173
BisI GCNGC 3 cut(s) 180, 219, 358
BlpI GCTNAGC 1 cut(s) 189
BlsI GCNGC 3 cut(s) 181, 220, 359
Bme1390I CCNGG 2 cut(s) 95, 167
BmgT120I GGNCC 1 cut(s) 291
BmiI GGNNCC 2 cut(s) 171, 292
BmrFI CCNGG 2 cut(s) 95, 167
BmsI GCATC 2 cut(s) 130, 205
BpmI CTGGAG 1 cut(s) 50
Bpu10I CCTNAGC 2 cut(s) 333, 369
Bpu1102I GCTNAGC 1 cut(s) 189
Bpu14I TTCGAA 1 cut(s) 265
BsaHI GRCGYC 1 cut(s) 170
BsaJI CCNNGG 2 cut(s) 165, 173
BsaXI ACNNNNNCTCC 2 cut(s) 48, 78
Bsc4I CCNNNNNNNGG 1 cut(s) 225
BseBI CCWGG 2 cut(s) 95, 167
BseDI CCNNGG 2 cut(s) 165, 173
BseGI GGATG 1 cut(s) 154
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 2 cut(s) 180, 324
BseXI GCAGC 2 cut(s) 191, 344
BshFI GGCC 2 cut(s) 83, 293
BshNI GGYRCC 1 cut(s) 169
BslI CCNNNNNNNGG 1 cut(s) 225
BsmI GAATGC 1 cut(s) 325
BsnI GGCC 2 cut(s) 83, 293
Bsp119I TTCGAA 1 cut(s) 265
Bsp143I GATC 1 cut(s) 146
Bsp1720I GCTNAGC 1 cut(s) 189
BspACI CCGC 4 cut(s) 219, 245, 314, 376
BspANI GGCC 2 cut(s) 83, 293
BspCNI CTCAG 2 cut(s) 181, 325
BspLI GGNNCC 2 cut(s) 171, 292
BspT104I TTCGAA 1 cut(s) 265
BspT107I GGYRCC 1 cut(s) 169
BsrBI CCGCTC 1 cut(s) 376
BssECI CCNNGG 2 cut(s) 165, 173
BssMI GATC 1 cut(s) 146
BssNI GRCGYC 1 cut(s) 170
BssT1I CCWWGG 1 cut(s) 173
Bst2UI CCWGG 2 cut(s) 95, 167
BstACI GRCGYC 1 cut(s) 170
BstAPI GCANNNNNTGC 1 cut(s) 185
BstBI TTCGAA 1 cut(s) 265
BstC8I GCNNGC 1 cut(s) 253
BstDEI CTNAG 4 cut(s) 26, 189, 333, 369
BstF5I GGATG 1 cut(s) 154
BstH2I RGCGCY 1 cut(s) 173
BstHHI GCGC 1 cut(s) 172
BstKTI GATC 1 cut(s) 149
BstMBI GATC 1 cut(s) 146
BstMWI GCNNNNNNNGC 4 cut(s) 176, 185, 320, 329
BstNI CCWGG 2 cut(s) 95, 167
BstNSI RCATGY 1 cut(s) 240
BstSCI CCNGG 2 cut(s) 93, 165
BstV1I GCAGC 2 cut(s) 191, 344
BstXI CCANNNNNNTGG 1 cut(s) 301
BsuRI GGCC 2 cut(s) 83, 293
BtsCI GGATG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 253
CaiI CAGNNNCTG 1 cut(s) 185
CfoI GCGC 1 cut(s) 172
Cfr13I GGNCC 1 cut(s) 291
CsiI ACCWGGT 1 cut(s) 93
CviAII CATG 2 cut(s) 237, 388
CviJI RGCY 8 cut(s) 83, 182, 193, 251, 293, 357, 418, 438
CviKI_1 RGCY 8 cut(s) 83, 182, 193, 251, 293, 357, 418, 438
DdeI CTNAG 4 cut(s) 26, 189, 333, 369
DinI GGCGCC 1 cut(s) 171
DpnI GATC 1 cut(s) 148
DpnII GATC 1 cut(s) 146
Eco130I CCWWGG 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 93, 165
EcoT14I CCWWGG 1 cut(s) 173
EgeI GGCGCC 1 cut(s) 171
EheI GGCGCC 1 cut(s) 171
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 2 cut(s) 240, 391
FaiI YATR 4 cut(s) 238, 257, 349, 389
FatI CATG 2 cut(s) 236, 387
FauI CCCGC 2 cut(s) 238, 369
Fnu4HI GCNGC 3 cut(s) 180, 219, 358
FokI GGATG 1 cut(s) 141
Fsp4HI GCNGC 3 cut(s) 180, 219, 358
GlaI GCGC 1 cut(s) 171
GluI GCNGC 3 cut(s) 180, 219, 358
GsuI CTGGAG 1 cut(s) 50
HaeII RGCGCY 1 cut(s) 173
HaeIII GGCC 2 cut(s) 83, 293
HhaI GCGC 1 cut(s) 172
Hin1I GRCGYC 1 cut(s) 170
Hin1II CATG 2 cut(s) 240, 391
Hin6I GCGC 1 cut(s) 170
HinP1I GCGC 1 cut(s) 170
HinfI GANTC 3 cut(s) 108, 401, 407
HphI GGTGA 1 cut(s) 121
Hpy188I TCNGA 1 cut(s) 406
HpyAV CCTTC 3 cut(s) 85, 144, 269
HpyCH4V TGCA 1 cut(s) 360
HpyF10VI GCNNNNNNNGC 4 cut(s) 176, 185, 320, 329
HpyF3I CTNAG 4 cut(s) 26, 189, 333, 369
Hsp92I GRCGYC 1 cut(s) 170
Hsp92II CATG 2 cut(s) 240, 391
HspAI GCGC 1 cut(s) 170
KasI GGCGCC 1 cut(s) 169
Kzo9I GATC 1 cut(s) 146
LmnI GCTCC 2 cut(s) 373, 415
LpnPI CCDG 7 cut(s) 80, 80, 107, 152, 179, 198, 237
Lsp1109I GCAGC 2 cut(s) 191, 344
LweI GCATC 2 cut(s) 130, 205
MabI ACCWGGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 380
MalI GATC 1 cut(s) 148
MbiI CCGCTC 1 cut(s) 376
MboI GATC 1 cut(s) 146
MboII GAAGA 2 cut(s) 31, 291
MluCI AATT 2 cut(s) 49, 362
Mly113I GGCGCC 1 cut(s) 170
MlyI GAGTC 1 cut(s) 410
MnlI CCTC 4 cut(s) 169, 219, 328, 346
MspR9I CCNGG 2 cut(s) 95, 167
Mva1269I GAATGC 1 cut(s) 325
MvaI CCWGG 2 cut(s) 95, 167
MwoI GCNNNNNNNGC 4 cut(s) 176, 185, 320, 329
NarI GGCGCC 1 cut(s) 170
NdeII GATC 1 cut(s) 146
NlaIII CATG 2 cut(s) 240, 391
NlaIV GGNNCC 2 cut(s) 171, 292
NmuCI GTSAC 1 cut(s) 380
NspI RCATGY 1 cut(s) 240
NspV TTCGAA 1 cut(s) 265
PciI ACATGT 1 cut(s) 236
PctI GAATGC 1 cut(s) 325
PfeI GAWTC 2 cut(s) 108, 407
PkrI GCNGC 3 cut(s) 181, 220, 359
PleI GAGTC 1 cut(s) 409
PluTI GGCGCC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 409
PscI ACATGT 1 cut(s) 236
Psp6I CCWGG 2 cut(s) 93, 165
PspGI CCWGG 2 cut(s) 93, 165
PspN4I GGNNCC 2 cut(s) 171, 292
PspPI GGNCC 1 cut(s) 291
PstNI CAGNNNCTG 1 cut(s) 185
SatI GCNGC 3 cut(s) 180, 219, 358
Sau3AI GATC 1 cut(s) 146
Sau96I GGNCC 1 cut(s) 291
SchI GAGTC 1 cut(s) 410
ScrFI CCNGG 2 cut(s) 95, 167
SetI ASST 3 cut(s) 77, 99, 420
SexAI ACCWGGT 1 cut(s) 93
SfaNI GCATC 2 cut(s) 130, 205
SfoI GGCGCC 1 cut(s) 171
SfuI TTCGAA 1 cut(s) 265
Sse9I AATT 2 cut(s) 49, 362
SsiI CCGC 4 cut(s) 219, 245, 314, 376
SspDI GGCGCC 1 cut(s) 169
StyD4I CCNGG 2 cut(s) 93, 165
StyI CCWWGG 1 cut(s) 173
TaqI TCGA 3 cut(s) 90, 265, 399
TasI AATT 2 cut(s) 49, 362
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 2 cut(s) 108, 407
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 2 cut(s) 179, 357
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 117, 143
XapI RAATTY 1 cut(s) 362
XceI RCATGY 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.