MD04G1168000.v1.1

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0000093
Physical Location & Seq
Forward (+)
25815914 .. 25817098
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1168000.v1.1.491

Sequence Viewer

Length: 681 bp
ATGTGGAAGACCTTACAGGAGGCAGTGGCAAATAAGGCTAATTTGTTTAAGCGCCGATCTTCTCCTTCACCAATCTGCCCTTTTTGCAACTCGAAGGAAGAATCAATGATACATCTTTTTCTTCAATGCCCGTGGGTGGAGAAGGTGTGGCACGGGAGAATGTTGACAAGAGGCTTACGCAGGGGGGAGGTTACATCTTGGGCGAATTGGTTGGGTGTTATTCCTGATTCGGTAAATGGACAGACTAGTGCAAGGAGCAGCTTGCTTTCATATGTTGCTATCACTTGTTGGCACATATGGAAGGCAAGATGCAACTTCCTCTTCAATCAACAATCCATCTTTCCACGGCAGATTATTGCAGCTATCACCCATTCGGTGGTTGCTTTTAAGGAAACTAATCAGACCCTGTCCATTAGCTTGTCGATCTTTGTCCCAGATTTGGCTACGATGGGCAGTTGGGAAGCTTTCCCAATTCTAGCGCGGAGCAAAGGAATGGGGGAGGCTTTTAATGACTGCCGCTGGTGTTCAGTTTCAAGATCGGTCAATATGGCTGCAGATCTTTTGGCGTCGCGGCAAAGTAGGGAGGTATGTGATAATGTTTGTGATAATGTTTGGGTTTATAGACCCTCATGCTCCCTTGTGTATGTTTTGTGTAATGATGGTCTTCATTGTCCCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

227

Amino Acids

25.57

Weight (kDa)

8.89

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 1 - 50 1.6e-09 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 376
AccII CGCG 2 cut(s) 481, 571
AciI CCGC 3 cut(s) 481, 517, 571
AcyI GRCGYC 1 cut(s) 566
AfiI CCNNNNNNNGG 3 cut(s) 136, 376, 439
AgsI TTSAA 3 cut(s) 125, 325, 534
AhlI ACTAGT 1 cut(s) 245
AluBI AGCT 4 cut(s) 261, 362, 417, 464
AluI AGCT 4 cut(s) 261, 362, 417, 464
AlwNI CAGNNNCTG 1 cut(s) 406
ApeKI GCWGC 3 cut(s) 258, 359, 551
AspLEI GCGC 2 cut(s) 54, 481
AsuHPI GGTGA 2 cut(s) 60, 358
BbsI GAAGAC 2 cut(s) 14, 656
BbvI GCAGC 3 cut(s) 270, 371, 538
BccI CCATC 3 cut(s) 344, 442, 653
BceAI ACGGC 1 cut(s) 362
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 2 cut(s) 246, 476
BfmI CTRYAG 1 cut(s) 552
BfoI RGCGCY 1 cut(s) 55
BglII AGATCT 1 cut(s) 556
BisI GCNGC 5 cut(s) 259, 360, 517, 552, 572
BlsI GCNGC 5 cut(s) 260, 361, 518, 553, 573
BmsI GCATC 1 cut(s) 299
BpiI GAAGAC 2 cut(s) 14, 656
BsaHI GRCGYC 1 cut(s) 566
BsaJI CCNNGG 2 cut(s) 131, 344
BsaXI ACNNNNNCTCC 2 cut(s) 131, 161
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 376, 439
BseDI CCNNGG 2 cut(s) 131, 344
BseLI CCNNNNNNNGG 3 cut(s) 136, 376, 439
BseXI GCAGC 3 cut(s) 270, 371, 538
Bsh1236I CGCG 2 cut(s) 481, 571
BslFI GGGAC 2 cut(s) 416, 657
BslI CCNNNNNNNGG 3 cut(s) 136, 376, 439
BsmFI GGGAC 2 cut(s) 416, 657
Bsp143I GATC 4 cut(s) 56, 423, 536, 556
BspACI CCGC 3 cut(s) 481, 517, 571
BspFNI CGCG 2 cut(s) 481, 571
BspMAI CTGCAG 1 cut(s) 556
BssECI CCNNGG 2 cut(s) 131, 344
BssMI GATC 4 cut(s) 56, 423, 536, 556
BssNI GRCGYC 1 cut(s) 566
Bst6I CTCTTC 1 cut(s) 326
BstACI GRCGYC 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 263
BstDSI CCRYGG 2 cut(s) 131, 344
BstFNI CGCG 2 cut(s) 481, 571
BstH2I RGCGCY 1 cut(s) 55
BstHHI GCGC 2 cut(s) 54, 481
BstKTI GATC 4 cut(s) 59, 426, 539, 559
BstMBI GATC 4 cut(s) 56, 423, 536, 556
BstMWI GCNNNNNNNGC 2 cut(s) 35, 84
BstSFI CTRYAG 1 cut(s) 552
BstUI CGCG 2 cut(s) 481, 571
BstV1I GCAGC 3 cut(s) 270, 371, 538
BstV2I GAAGAC 2 cut(s) 14, 656
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BtgI CCRYGG 2 cut(s) 131, 344
BtsI GCAGTG 1 cut(s) 30
BtsIMutI CAGTG 1 cut(s) 30
Cac8I GCNNGC 1 cut(s) 263
CaiI CAGNNNCTG 1 cut(s) 406
CfoI GCGC 2 cut(s) 54, 481
CseI GACGC 1 cut(s) 555
CspCI CAANNNNNGTGG 2 cut(s) 113, 148
CviAII CATG 1 cut(s) 630
CviJI RGCY 9 cut(s) 38, 174, 261, 362, 417, 443, 464, 503, 551
CviKI_1 RGCY 9 cut(s) 38, 174, 261, 362, 417, 443, 464, 503, 551
DpnI GATC 4 cut(s) 58, 425, 538, 558
DpnII GATC 4 cut(s) 56, 423, 536, 556
Eam1104I CTCTTC 1 cut(s) 326
EarI CTCTTC 1 cut(s) 326
FaeI CATG 1 cut(s) 633
FaiI YATR 9 cut(s) 271, 273, 296, 298, 548, 589, 621, 631, 645
FaqI GGGAC 2 cut(s) 416, 657
FatI CATG 1 cut(s) 629
FauNDI CATATG 2 cut(s) 271, 296
Fnu4HI GCNGC 5 cut(s) 259, 360, 517, 552, 572
Fsp4HI GCNGC 5 cut(s) 259, 360, 517, 552, 572
FspBI CTAG 2 cut(s) 246, 476
GlaI GCGC 2 cut(s) 53, 480
GluI GCNGC 5 cut(s) 259, 360, 517, 552, 572
HaeII RGCGCY 1 cut(s) 55
HgaI GACGC 1 cut(s) 555
HhaI GCGC 2 cut(s) 54, 481
Hin1I GRCGYC 1 cut(s) 566
Hin1II CATG 1 cut(s) 633
Hin6I GCGC 2 cut(s) 52, 479
HinP1I GCGC 2 cut(s) 52, 479
HincII GTYRAC 1 cut(s) 165
HindII GTYRAC 1 cut(s) 165
HindIII AAGCTT 1 cut(s) 462
HinfI GANTC 2 cut(s) 101, 227
HphI GGTGA 2 cut(s) 60, 358
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 1 cut(s) 402
Hpy188III TCNNGA 2 cut(s) 224, 534
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 1 cut(s) 571
HpyAV CCTTC 4 cut(s) 75, 88, 136, 295
HpyCH4V TGCA 5 cut(s) 87, 251, 312, 359, 554
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 84
Hsp92I GRCGYC 1 cut(s) 566
Hsp92II CATG 1 cut(s) 633
HspAI GCGC 2 cut(s) 52, 479
Kzo9I GATC 4 cut(s) 56, 423, 536, 556
LmnI GCTCC 3 cut(s) 255, 483, 638
LpnPI CCDG 6 cut(s) 2, 166, 237, 419, 447, 505
Lsp1109I GCAGC 3 cut(s) 270, 371, 538
LweI GCATC 1 cut(s) 299
MaeI CTAG 2 cut(s) 246, 476
MaeIII GTNAC 1 cut(s) 190
MalI GATC 4 cut(s) 58, 425, 538, 558
MboI GATC 4 cut(s) 56, 423, 536, 556
MboII GAAGA 6 cut(s) 19, 51, 110, 113, 313, 656
MflI RGATCY 1 cut(s) 556
MluCI AATT 3 cut(s) 40, 205, 471
MnlI CCTC 7 cut(s) 13, 164, 181, 329, 493, 577, 637
MseI TTAA 4 cut(s) 48, 387, 507, 679
MspA1I CMGCKG 1 cut(s) 519
MvnI CGCG 2 cut(s) 481, 571
MwoI GCNNNNNNNGC 2 cut(s) 35, 84
NdeI CATATG 2 cut(s) 271, 296
NdeII GATC 4 cut(s) 56, 423, 536, 556
NlaIII CATG 1 cut(s) 633
PfeI GAWTC 2 cut(s) 101, 227
PflFI GACNNNGTC 1 cut(s) 406
PflMI CCANNNNNTGG 1 cut(s) 376
PkrI GCNGC 5 cut(s) 260, 361, 518, 553, 573
PstI CTGCAG 1 cut(s) 556
PstNI CAGNNNCTG 1 cut(s) 406
PsuI RGATCY 1 cut(s) 556
PsyI GACNNNGTC 1 cut(s) 406
SaqAI TTAA 4 cut(s) 48, 387, 507, 679
SatI GCNGC 5 cut(s) 259, 360, 517, 552, 572
Sau3AI GATC 4 cut(s) 56, 423, 536, 556
SetI ASST 8 cut(s) 14, 147, 192, 263, 364, 419, 466, 588
SfaNI GCATC 1 cut(s) 299
SfcI CTRYAG 1 cut(s) 552
SpeI ACTAGT 1 cut(s) 245
Sse9I AATT 3 cut(s) 40, 205, 471
SsiI CCGC 3 cut(s) 481, 517, 571
SspMI CTAG 2 cut(s) 246, 476
TaqI TCGA 2 cut(s) 92, 422
TaqII GACCGA 1 cut(s) 529
TasI AATT 3 cut(s) 40, 205, 471
TauI GCSGC 2 cut(s) 519, 574
TfiI GAWTC 2 cut(s) 101, 227
Tru1I TTAA 4 cut(s) 48, 387, 507, 679
Tru9I TTAA 4 cut(s) 48, 387, 507, 679
TscAI CASTG 1 cut(s) 30
TseI GCWGC 3 cut(s) 258, 359, 551
TspDTI ATGAA 2 cut(s) 258, 656
TspRI CASTG 1 cut(s) 30
Tth111I GACNNNGTC 1 cut(s) 406
Van91I CCANNNNNTGG 1 cut(s) 376
XspI CTAG 2 cut(s) 246, 476
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.