ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 168 |
| AciI | CCGC | 1 cut(s) | 97 |
| AclI | AACGTT | 1 cut(s) | 250 |
| AclWI | GGATC | 5 cut(s) | 231, 403, 411, 461, 474 |
| AcsI | RAATTY | 1 cut(s) | 491 |
| AcyI | GRCGYC | 1 cut(s) | 902 |
| AfeI | AGCGCT | 1 cut(s) | 289 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 449 |
| AgsI | TTSAA | 8 cut(s) | 182, 236, 373, 496, 512, 544, 710, 746 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 365, 397 |
| AleI | CACNNNNGTG | 1 cut(s) | 722 |
| AluBI | AGCT | 6 cut(s) | 73, 265, 270, 499, 508, 736 |
| AluI | AGCT | 6 cut(s) | 73, 265, 270, 499, 508, 736 |
| Alw21I | GWGCWC | 1 cut(s) | 75 |
| Alw26I | GTCTC | 2 cut(s) | 96, 623 |
| AlwI | GGATC | 5 cut(s) | 231, 403, 411, 461, 474 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 406, 434 |
| Ama87I | CYCGRG | 1 cut(s) | 86 |
| Aor13HI | TCCGGA | 1 cut(s) | 168 |
| Aor51HI | AGCGCT | 1 cut(s) | 289 |
| ApeKI | GCWGC | 1 cut(s) | 824 |
| ApoI | RAATTY | 1 cut(s) | 491 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 677, 709 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 81 |
| AspLEI | GCGC | 2 cut(s) | 158, 290 |
| AsuHPI | GGTGA | 2 cut(s) | 37, 111 |
| AsuII | TTCGAA | 1 cut(s) | 322 |
| AvaI | CYCGRG | 1 cut(s) | 86 |
| BamHI | GGATCC | 1 cut(s) | 466 |
| BanII | GRGCYC | 1 cut(s) | 75 |
| BbsI | GAAGAC | 2 cut(s) | 12, 492 |
| Bbv12I | GWGCWC | 1 cut(s) | 75 |
| BbvI | GCAGC | 1 cut(s) | 811 |
| BccI | CCATC | 1 cut(s) | 101 |
| BcoDI | GTCTC | 2 cut(s) | 96, 623 |
| BfaI | CTAG | 1 cut(s) | 906 |
| BfmI | CTRYAG | 1 cut(s) | 126 |
| BfoI | RGCGCY | 1 cut(s) | 291 |
| BisI | GCNGC | 2 cut(s) | 97, 825 |
| BlpI | GCTNAGC | 1 cut(s) | 266 |
| BlsI | GCNGC | 2 cut(s) | 98, 826 |
| BmeT110I | CYCGRG | 1 cut(s) | 86 |
| BmiI | GGNNCC | 2 cut(s) | 112, 468 |
| BmrI | ACTGGG | 2 cut(s) | 5, 431 |
| BmsI | GCATC | 5 cut(s) | 83, 421, 574, 595, 811 |
| BmuI | ACTGGG | 2 cut(s) | 5, 431 |
| BpiI | GAAGAC | 2 cut(s) | 12, 492 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 254, 286 |
| BpmI | CTGGAG | 2 cut(s) | 428, 524 |
| Bpu10I | CCTNAGC | 1 cut(s) | 291 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 266 |
| Bpu14I | TTCGAA | 1 cut(s) | 322 |
| BpuEI | CTTGAG | 3 cut(s) | 89, 605, 790 |
| BsaHI | GRCGYC | 1 cut(s) | 902 |
| BsaI | GGTCTC | 1 cut(s) | 623 |
| BsaJI | CCNNGG | 2 cut(s) | 273, 895 |
| BsaWI | WCCGGW | 1 cut(s) | 168 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 449 |
| Bse118I | RCCGGY | 1 cut(s) | 345 |
| Bse1I | ACTGG | 3 cut(s) | 11, 426, 507 |
| Bse3DI | GCAATG | 1 cut(s) | 848 |
| BseAI | TCCGGA | 1 cut(s) | 168 |
| BseDI | CCNNGG | 2 cut(s) | 273, 895 |
| BseGI | GGATG | 1 cut(s) | 610 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 449 |
| BseMI | GCAATG | 1 cut(s) | 848 |
| BseMII | CTCAG | 2 cut(s) | 149, 273 |
| BseNI | ACTGG | 3 cut(s) | 11, 426, 507 |
| BseXI | GCAGC | 1 cut(s) | 811 |
| BsgI | GTGCAG | 2 cut(s) | 447, 893 |
| BsiHKAI | GWGCWC | 1 cut(s) | 75 |
| BsiHKCI | CYCGRG | 1 cut(s) | 86 |
| BsiSI | CCGG | 2 cut(s) | 169, 346 |
| BslFI | GGGAC | 3 cut(s) | 532, 679, 772 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 449 |
| BsmAI | GTCTC | 2 cut(s) | 96, 623 |
| BsmBI | CGTCTC | 1 cut(s) | 96 |
| BsmFI | GGGAC | 3 cut(s) | 532, 679, 772 |
| BsmI | GAATGC | 1 cut(s) | 569 |
| Bso31I | GGTCTC | 1 cut(s) | 623 |
| BsoBI | CYCGRG | 1 cut(s) | 86 |
| Bsp119I | TTCGAA | 1 cut(s) | 322 |
| Bsp1286I | GDGCHC | 1 cut(s) | 75 |
| Bsp13I | TCCGGA | 1 cut(s) | 168 |
| Bsp143I | GATC | 5 cut(s) | 223, 395, 403, 457, 466 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 266 |
| Bsp19I | CCATGG | 1 cut(s) | 895 |
| BspACI | CCGC | 1 cut(s) | 97 |
| BspCNI | CTCAG | 2 cut(s) | 148, 274 |
| BspEI | TCCGGA | 1 cut(s) | 168 |
| BspLI | GGNNCC | 2 cut(s) | 112, 468 |
| BspMAI | CTGCAG | 1 cut(s) | 130 |
| BspPI | GGATC | 5 cut(s) | 231, 403, 411, 461, 474 |
| BspT104I | TTCGAA | 1 cut(s) | 322 |
| BspTNI | GGTCTC | 1 cut(s) | 623 |
| BsrDI | GCAATG | 1 cut(s) | 848 |
| BsrFI | RCCGGY | 1 cut(s) | 345 |
| BsrI | ACTGG | 3 cut(s) | 11, 426, 507 |
| BssAI | RCCGGY | 1 cut(s) | 345 |
| BssECI | CCNNGG | 2 cut(s) | 273, 895 |
| BssMI | GATC | 5 cut(s) | 223, 395, 403, 457, 466 |
| BssNI | GRCGYC | 1 cut(s) | 902 |
| BssT1I | CCWWGG | 1 cut(s) | 895 |
| Bst4CI | ACNGT | 2 cut(s) | 597, 647 |
| Bst6I | CTCTTC | 1 cut(s) | 72 |
| BstACI | GRCGYC | 1 cut(s) | 902 |
| BstBI | TTCGAA | 1 cut(s) | 322 |
| BstDEI | CTNAG | 5 cut(s) | 135, 266, 282, 291, 662 |
| BstDSI | CCRYGG | 2 cut(s) | 273, 895 |
| BstF5I | GGATG | 1 cut(s) | 610 |
| BstH2I | RGCGCY | 1 cut(s) | 291 |
| BstHHI | GCGC | 2 cut(s) | 158, 290 |
| BstKTI | GATC | 5 cut(s) | 226, 398, 406, 460, 469 |
| BstMAI | GTCTC | 2 cut(s) | 96, 623 |
| BstMBI | GATC | 5 cut(s) | 223, 395, 403, 457, 466 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 287, 505 |
| BstSFI | CTRYAG | 1 cut(s) | 126 |
| BstV1I | GCAGC | 1 cut(s) | 811 |
| BstV2I | GAAGAC | 2 cut(s) | 12, 492 |
| BstX2I | RGATCY | 2 cut(s) | 403, 466 |
| BstYI | RGATCY | 2 cut(s) | 403, 466 |
| BtgI | CCRYGG | 2 cut(s) | 273, 895 |
| BtgZI | GCGATG | 1 cut(s) | 106 |
| BtsCI | GGATG | 1 cut(s) | 610 |
| BtsI | GCAGTG | 1 cut(s) | 860 |
| BtsIMutI | CAGTG | 1 cut(s) | 860 |
| CaiI | CAGNNNCTG | 2 cut(s) | 406, 434 |
| CfoI | GCGC | 2 cut(s) | 158, 290 |
| Cfr10I | RCCGGY | 1 cut(s) | 345 |
| CseI | GACGC | 1 cut(s) | 891 |
| CviAII | CATG | 3 cut(s) | 329, 731, 896 |
| DdeI | CTNAG | 5 cut(s) | 135, 266, 282, 291, 662 |
| DpnI | GATC | 5 cut(s) | 225, 397, 405, 459, 468 |
| DpnII | GATC | 5 cut(s) | 223, 395, 403, 457, 466 |
| Eam1104I | CTCTTC | 1 cut(s) | 72 |
| EarI | CTCTTC | 1 cut(s) | 72 |
| Ecl136II | GAGCTC | 1 cut(s) | 73 |
| Eco130I | CCWWGG | 1 cut(s) | 895 |
| Eco24I | GRGCYC | 1 cut(s) | 75 |
| Eco31I | GGTCTC | 1 cut(s) | 623 |
| Eco47III | AGCGCT | 1 cut(s) | 289 |
| Eco53kI | GAGCTC | 1 cut(s) | 73 |
| Eco88I | CYCGRG | 1 cut(s) | 86 |
| EcoICRI | GAGCTC | 1 cut(s) | 73 |
| EcoT14I | CCWWGG | 1 cut(s) | 895 |
| EcoT22I | ATGCAT | 1 cut(s) | 610 |
| EcoT38I | GRGCYC | 1 cut(s) | 75 |
| ErhI | CCWWGG | 1 cut(s) | 895 |
| Esp3I | CGTCTC | 1 cut(s) | 96 |
| FaeI | CATG | 3 cut(s) | 332, 734, 899 |
| FaqI | GGGAC | 3 cut(s) | 532, 679, 772 |
| FatI | CATG | 3 cut(s) | 328, 730, 895 |
| Fnu4HI | GCNGC | 2 cut(s) | 97, 825 |
| FokI | GGATG | 1 cut(s) | 617 |
| FriOI | GRGCYC | 1 cut(s) | 75 |
| Fsp4HI | GCNGC | 2 cut(s) | 97, 825 |
| FspBI | CTAG | 1 cut(s) | 906 |
| GlaI | GCGC | 2 cut(s) | 157, 289 |
| GluI | GCNGC | 2 cut(s) | 97, 825 |
| GsuI | CTGGAG | 2 cut(s) | 428, 524 |
| HaeII | RGCGCY | 1 cut(s) | 291 |
| HapII | CCGG | 2 cut(s) | 169, 346 |
| HgaI | GACGC | 1 cut(s) | 891 |
| HhaI | GCGC | 2 cut(s) | 158, 290 |
| Hin1I | GRCGYC | 1 cut(s) | 902 |
| Hin1II | CATG | 3 cut(s) | 332, 734, 899 |
| Hin6I | GCGC | 2 cut(s) | 156, 288 |
| HinP1I | GCGC | 2 cut(s) | 156, 288 |
| HinfI | GANTC | 4 cut(s) | 82, 116, 131, 529 |
| HpaII | CCGG | 2 cut(s) | 169, 346 |
| HphI | GGTGA | 2 cut(s) | 37, 111 |
| Hpy166II | GTNNAC | 1 cut(s) | 727 |
| Hpy188I | TCNGA | 6 cut(s) | 115, 196, 205, 301, 471, 519 |
| Hpy188III | TCNNGA | 6 cut(s) | 86, 137, 169, 227, 407, 818 |
| Hpy8I | GTNNAC | 1 cut(s) | 727 |
| HpyAV | CCTTC | 3 cut(s) | 27, 453, 749 |
| HpyCH4III | ACNGT | 2 cut(s) | 597, 647 |
| HpyCH4IV | ACGT | 1 cut(s) | 250 |
| HpyCH4V | TGCA | 8 cut(s) | 128, 428, 567, 608, 827, 853, 874, 921 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 287, 505 |
| HpyF3I | CTNAG | 5 cut(s) | 135, 266, 282, 291, 662 |
| HpySE526I | ACGT | 1 cut(s) | 250 |
| Hsp92I | GRCGYC | 1 cut(s) | 902 |
| Hsp92II | CATG | 3 cut(s) | 332, 734, 899 |
| HspAI | GCGC | 2 cut(s) | 156, 288 |
| Kpn2I | TCCGGA | 1 cut(s) | 168 |
| Kzo9I | GATC | 5 cut(s) | 223, 395, 403, 457, 466 |
| LmnI | GCTCC | 3 cut(s) | 262, 275, 505 |
| Lsp1109I | GCAGC | 1 cut(s) | 811 |
| LweI | GCATC | 5 cut(s) | 83, 421, 574, 595, 811 |
| MaeI | CTAG | 1 cut(s) | 906 |
| MaeII | ACGT | 1 cut(s) | 250 |
| MaeIII | GTNAC | 2 cut(s) | 657, 862 |
| MalI | GATC | 5 cut(s) | 225, 397, 405, 459, 468 |
| MboI | GATC | 5 cut(s) | 223, 395, 403, 457, 466 |
| MboII | GAAGA | 7 cut(s) | 12, 17, 89, 347, 497, 722, 837 |
| MflI | RGATCY | 2 cut(s) | 403, 466 |
| MhlI | GDGCHC | 1 cut(s) | 75 |
| MluCI | AATT | 4 cut(s) | 306, 491, 537, 705 |
| MmeI | TCCRAC | 3 cut(s) | 373, 444, 890 |
| MnlI | CCTC | 7 cut(s) | 53, 271, 304, 325, 595, 631, 765 |
| Mph1103I | ATGCAT | 1 cut(s) | 610 |
| MroI | TCCGGA | 1 cut(s) | 168 |
| MroXI | GAANNNNTTC | 1 cut(s) | 81 |
| MseI | TTAA | 4 cut(s) | 147, 342, 573, 888 |
| MslI | CAYNNNNRTG | 2 cut(s) | 722, 853 |
| MspI | CCGG | 2 cut(s) | 169, 346 |
| Mva1269I | GAATGC | 1 cut(s) | 569 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 287, 505 |
| NcoI | CCATGG | 1 cut(s) | 895 |
| NdeII | GATC | 5 cut(s) | 223, 395, 403, 457, 466 |
| NlaIII | CATG | 3 cut(s) | 332, 734, 899 |
| NlaIV | GGNNCC | 2 cut(s) | 112, 468 |
| NmeAIII | GCCGAG | 1 cut(s) | 125 |
| NmuCI | GTSAC | 1 cut(s) | 657 |
| NsiI | ATGCAT | 1 cut(s) | 610 |
| NspV | TTCGAA | 1 cut(s) | 322 |
| OliI | CACNNNNGTG | 1 cut(s) | 722 |
| PaeR7I | CTCGAG | 1 cut(s) | 86 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 111 |
| PctI | GAATGC | 1 cut(s) | 569 |
| PdmI | GAANNNNTTC | 1 cut(s) | 81 |
| PfeI | GAWTC | 4 cut(s) | 82, 116, 131, 529 |
| PkrI | GCNGC | 2 cut(s) | 98, 826 |
| Psp124BI | GAGCTC | 1 cut(s) | 75 |
| Psp1406I | AACGTT | 1 cut(s) | 250 |
| PspN4I | GGNNCC | 2 cut(s) | 112, 468 |
| PstI | CTGCAG | 1 cut(s) | 130 |
| PstNI | CAGNNNCTG | 2 cut(s) | 406, 434 |
| PsuI | RGATCY | 2 cut(s) | 403, 466 |
| RseI | CAYNNNNRTG | 2 cut(s) | 722, 853 |
| SacI | GAGCTC | 1 cut(s) | 75 |
| SaqAI | TTAA | 4 cut(s) | 147, 342, 573, 888 |
| SatI | GCNGC | 2 cut(s) | 97, 825 |
| Sau3AI | GATC | 5 cut(s) | 223, 395, 403, 457, 466 |
| SduI | GDGCHC | 1 cut(s) | 75 |
| SfaNI | GCATC | 5 cut(s) | 83, 421, 574, 595, 811 |
| SfcI | CTRYAG | 1 cut(s) | 126 |
| Sfr274I | CTCGAG | 1 cut(s) | 86 |
| SfuI | TTCGAA | 1 cut(s) | 322 |
| SlaI | CTCGAG | 1 cut(s) | 86 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 722, 853 |
| SmlI | CTYRAG | 4 cut(s) | 68, 86, 620, 769 |
| SmoI | CTYRAG | 4 cut(s) | 68, 86, 620, 769 |
| Sse9I | AATT | 4 cut(s) | 306, 491, 537, 705 |
| SsiI | CCGC | 1 cut(s) | 97 |
| SspMI | CTAG | 1 cut(s) | 906 |
| SstI | GAGCTC | 1 cut(s) | 75 |
| StyI | CCWWGG | 1 cut(s) | 895 |
| TaaI | ACNGT | 2 cut(s) | 597, 647 |
| TaiI | ACGT | 1 cut(s) | 253 |
| TaqI | TCGA | 3 cut(s) | 75, 87, 322 |
| TasI | AATT | 4 cut(s) | 306, 491, 537, 705 |
| TauI | GCSGC | 1 cut(s) | 99 |
| TfiI | GAWTC | 4 cut(s) | 82, 116, 131, 529 |
| Tru1I | TTAA | 4 cut(s) | 147, 342, 573, 888 |
| Tru9I | TTAA | 4 cut(s) | 147, 342, 573, 888 |
| TscAI | CASTG | 1 cut(s) | 860 |
| TseFI | GTSAC | 1 cut(s) | 657 |
| TseI | GCWGC | 1 cut(s) | 824 |
| Tsp45I | GTSAC | 1 cut(s) | 657 |
| TspDTI | ATGAA | 6 cut(s) | 12, 318, 369, 488, 498, 837 |
| TspGWI | ACGGA | 1 cut(s) | 262 |
| TspRI | CASTG | 1 cut(s) | 860 |
| XapI | RAATTY | 1 cut(s) | 491 |
| XhoI | CTCGAG | 1 cut(s) | 86 |
| XmnI | GAANNNNTTC | 1 cut(s) | 81 |
| XspI | CTAG | 1 cut(s) | 906 |
| Zsp2I | ATGCAT | 1 cut(s) | 610 |