FvH4_3g25030

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0000093
Physical Location & Seq
Reverse (-)
18078441 .. 18078888
448 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g25030.t1

Sequence Viewer

Length: 363 bp
ATGATTGTTATCAATTGTGATGGGAGTTGGGATATTTCTGGATTGGGGGGCAAATGTGTGGTGATTAGAAACCACCTGGGGTCGTTTATGGCCATGGGTGGTCTTGCTTCCCCAGTTCGCACTAGCTCTGTAGAGGCAGTGGCAGCGCTAGCCATTCTTGCCGGCGTCAATCTCGCCGTTGACATGAATATGAAAGCAGTCCAAAAATCAAATGGAAGAGCAGGTTTTTTGATCGGGTTCACTGGAGGTGGATACCGCGAGAAGCTAATTATGCTGCTCACACAGCAGCACAGTTTGGAAAACAGGCGTTGGGCCTCTGCATCTGGTCGGAGACTCCCCCACCGTCTCTCACTATGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_3 zf-RVT

Protein Analysis

121

Amino Acids

12.89

Weight (kDa)

10.5

Isoelectric Point (pI)

35.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000093)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G09490
fragaria_vesca FvH4_1g23791 FvH4_2g01641 FvH4_2g04612 FvH4_2g06831 FvH4_2g07841 FvH4_2g13581 FvH4_2g27220 FvH4_2g30621 FvH4_2g34753 FvH4_3g10392 FvH4_3g24291 FvH4_3g25030 FvH4_3g29361 FvH4_3g31372 FvH4_3g32402 FvH4_3g43651 FvH4_4g03830 FvH4_4g05481 FvH4_4g20431 FvH4_4g21421 FvH4_4g25931 FvH4_5g08801 FvH4_5g21021 FvH4_5g26254 FvH4_5g30931 FvH4_5g31281 FvH4_5g33581 FvH4_5g35622 FvH4_6g02100 FvH4_6g07963 FvH4_6g11620 FvH4_6g16031 FvH4_6g19041 FvH4_6g24211 FvH4_6g24271 FvH4_6g30670 FvH4_6g49540 FvH4_7g25914
malus_domestica MD03G1245200.v1.1 MD04G1168000.v1.1 MD09G1242600.v1.1 MD15G1334000.v1.1 MD17G1165700.v1.1
prunus_persica Prupe.1G073500_v2.0.a1 Prupe.1G283700_v2.0.a1 Prupe.1G524100_v2.0.a1 Prupe.2G022700_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G022800_v2.0.a1 Prupe.2G044300_v2.0.a1 Prupe.2G048800_v2.0.a1 Prupe.2G092000_v2.0.a1 Prupe.2G216500_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.2G216600_v2.0.a1 Prupe.3G103400_v2.0.a1 Prupe.3G143300_v2.0.a1 Prupe.3G190000_v2.0.a1 Prupe.3G219800_v2.0.a1 Prupe.4G177800_v2.0.a1 Prupe.4G261300_v2.0.a1 Prupe.5G044600_v2.0.a1 Prupe.5G067400_v2.0.a1 Prupe.7G083900_v2.0.a1 Prupe.7G120900_v2.0.a1 Prupe.8G032200_v2.0.a1 Prupe.8G036100_v2.0.a1 Prupe.8G042700_v2.0.a1
pyrus_communis pycom01g21710 pycom02g19770 pycom03g05120 pycom05g01370 pycom05g08780 pycom05g10120 pycom07g01370 pycom07g05930 pycom08g15760 pycom08g18090 pycom08g21060 pycom09g03880 pycom10g03870 pycom13g22240 pycom16g05120 pycom16g17170 pycom17g12180 pycom17g16290 pycom17g21230 pycom17g24990 pycom215g00100
rosa_chinensis RchiOBHm_Chr1g0323031 RchiOBHm_Chr1g0324391 RchiOBHm_Chr1g0326401 RchiOBHm_Chr1g0327811 RchiOBHm_Chr1g0332521 RchiOBHm_Chr1g0336501 RchiOBHm_Chr1g0346021 RchiOBHm_Chr1g0347191 RchiOBHm_Chr1g0367181 RchiOBHm_Chr2g0089441 RchiOBHm_Chr2g0115441 RchiOBHm_Chr3g0490691 RchiOBHm_Chr4g0395251 RchiOBHm_Chr4g0398081 RchiOBHm_Chr4g0409451 RchiOBHm_Chr4g0413041 RchiOBHm_Chr4g0415471 RchiOBHm_Chr4g0420961 RchiOBHm_Chr5g0040301 RchiOBHm_Chr5g0070651 RchiOBHm_Chr6g0263011 RchiOBHm_Chr6g0270721 RchiOBHm_Chr6g0277111 RchiOBHm_Chr7g0179771 RchiOBHm_Chr7g0223051 RchiOBHm_Chr7g0225031 RchiOBHm_Chr7g0225091
rosa_laevigata RLG00000001668 RLG00000001672 RLG00000001676 RLG00000007762 RLG00000008994 RLG00000011117 RLG00000013729 RLG00000013839 RLG00000014759 RLG00000016638 RLG00000018535 RLG00000018614 RLG00000018646 RLG00000020679 RLG00000023337 RLG00000029348 RLG00000035891 RLG00000035912
rosa_multiflora Rmu_co8152500.1_g000001 Rmu_co8203314.1_g000001 Rmu_co8383183.1_g000001 Rmu_sc0000293.1_g000033 Rmu_sc0000367.1_g000226 Rmu_sc0000512.1_g000023 Rmu_sc0000594.1_g000059 Rmu_sc0000654.1_g000022 Rmu_sc0000654.1_g000047 Rmu_sc0000706.1_g000037 Rmu_sc0001348.1_g000008 Rmu_sc0001385.1_g000024 Rmu_sc0001405.1_g000002 Rmu_sc0001521.1_g000048 Rmu_sc0001932.1_g000008 Rmu_sc0001932.1_g000009 Rmu_sc0002535.1_g000011 Rmu_sc0002908.1_g000019 Rmu_sc0003709.1_g000004 Rmu_sc0003882.1_g000054 Rmu_sc0004035.1_g000007 Rmu_sc0004041.1_g000007 Rmu_sc0004288.1_g000011 Rmu_sc0004569.1_g000004 Rmu_sc0004677.1_g000016 Rmu_sc0004834.1_g000010 Rmu_sc0005193.1_g000008 Rmu_sc0005354.1_g000009 Rmu_sc0006514.1_g000021 Rmu_sc0006691.1_g000001 Rmu_sc0006888.1_g000021 Rmu_sc0006889.1_g000013 Rmu_sc0008096.1_g000017 Rmu_sc0008378.1_g000003 Rmu_sc0009127.1_g000005 Rmu_sc0009191.1_g000016 Rmu_sc0009687.1_g000018 Rmu_sc0009709.1_g000005 Rmu_sc0009880.1_g000015 Rmu_sc0011710.1_g000001 Rmu_sc0012615.1_g000004 Rmu_sc0016091.1_g000002 Rmu_sc0022339.1_g000006 Rmu_sc0026537.1_g000002 Rmu_sc0027689.1_g000002 Rmu_sc0036222.1_g000001 Rmu_sc0040890.1_g000001 Rmu_ssc0000148.1_g000006 Rmu_ssc0000151.1_g000017 Rmu_ssc0000404.1_g000018 Rmu_ssc0000449.1_g000009
rosa_roxburghii Rroxscaffold_1G00017760 Rroxscaffold_1G00059150 Rroxscaffold_2G00142560 Rroxscaffold_3G00220440 Rroxscaffold_3G00231700 Rroxscaffold_3G00232400 Rroxscaffold_3G00274510 Rroxscaffold_4G00288790 Rroxscaffold_4G00305680 Rroxscaffold_4G00314880 Rroxscaffold_4G00314900 Rroxscaffold_5G00334590 Rroxscaffold_6G00394110 Rroxscaffold_6G00415860 Rroxscaffold_7G00168240 Rroxscaffold_7G00204400 Rroxscaffold_7G00207840
rosa_rugosa Rorug01G0034900 Rorug02G0079500 Rorug02G0229000 Rorug02G0229100 Rorug02G0291400 Rorug02G0298800 Rorug03G0046400 Rorug03G0064700 Rorug03G0077300 Rorug03G0199000 Rorug03G0200400 Rorug04G0205200 Rorug05G0025400 Rorug05G0127400 Rorug05G0192100 Rorug05G0453400 Rorug05G0538300 Rorug06G0035200 Rorug06G0241000 Rorug06G0268300 Rorug07G0120300 Rorug07G0145000 Rorug07G0209100 Rorug07G0240500 Rorug07G0271700
rosa_samantha Rh1AG179100 Rh1BG106900 Rh1BG163400 Rh1BG163500 Rh1BG323500 Rh2CG447900 Rh2DG503700 Rh3AG293600 Rh3CG229100 Rh3DG221500 Rh4AG106000 Rh4BG267700 Rh4CG062500 Rh4CG090100 Rh4CG114800 Rh5AG038400 Rh5BG395400 Rh5CG441700 Rh5CG572000 Rh6AG222400 Rh6AG264500 Rh6BG137400 Rh6BG225700 Rh6CG144300 Rh6DG087600 Rh6DG096000 Rh6DG362400 Rh6DG390200 Rh7AG207500 Rh7AG324700 Rh7AG388800 Rh7AG437100 Rh7BG019000 Rh7BG374600 Rh7CG028700 Rh7CG341500 Rh7CG408000 Rh7CG408300 Rh7DG354600
rosa_wichuraiana Rw0G009630 Rw0G012170 Rw4G022700 Rw5G028420 Rw5G029490 Rw6G007220 Rw6G007410 Rw6G017880 Rw7G012440 Rw7G021830 Rw7G027490

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 212
AccII CGCG 1 cut(s) 258
AciI CCGC 1 cut(s) 256
AcoI YGGCCR 1 cut(s) 90
AcyI GRCGYC 1 cut(s) 165
AfeI AGCGCT 1 cut(s) 147
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 2 cut(s) 126, 265
AluI AGCT 2 cut(s) 126, 265
Alw26I GTCTC 2 cut(s) 325, 350
Aor51HI AGCGCT 1 cut(s) 147
AoxI GGCC 2 cut(s) 90, 312
ApeKI GCWGC 3 cut(s) 143, 274, 286
AspLEI GCGC 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 312
AsuHPI GGTGA 1 cut(s) 73
AsuNHI GCTAGC 1 cut(s) 148
BalI TGGCCA 1 cut(s) 92
BbvI GCAGC 3 cut(s) 155, 261, 298
BccI CCATC 1 cut(s) 14
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 77
BciVI GTATCC 1 cut(s) 245
BcoDI GTCTC 2 cut(s) 325, 350
BfaI CTAG 2 cut(s) 123, 149
BfmI CTRYAG 1 cut(s) 129
BfoI RGCGCY 1 cut(s) 149
BfuAI ACCTGC 1 cut(s) 212
BfuI GTATCC 1 cut(s) 245
BisI GCNGC 3 cut(s) 144, 275, 287
BlsI GCNGC 3 cut(s) 145, 276, 288
Bme1390I CCNGG 1 cut(s) 77
BmgT120I GGNCC 1 cut(s) 312
BmrFI CCNGG 1 cut(s) 77
BmrI ACTGGG 1 cut(s) 107
BmsI GCATC 1 cut(s) 329
BmtI GCTAGC 1 cut(s) 152
BmuI ACTGGG 1 cut(s) 107
BpmI CTGGAG 1 cut(s) 264
BsaBI GATNNNNATC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 165
BsaJI CCNNGG 2 cut(s) 76, 93
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 113, 247
Bse8I GATNNNNATC 1 cut(s) 8
BseBI CCWGG 1 cut(s) 77
BseDI CCNNGG 2 cut(s) 76, 93
BseJI GATNNNNATC 1 cut(s) 8
BseNI ACTGG 2 cut(s) 113, 247
BseXI GCAGC 3 cut(s) 155, 261, 298
Bsh1236I CGCG 1 cut(s) 258
BshFI GGCC 2 cut(s) 92, 314
BsiSI CCGG 1 cut(s) 162
BsmAI GTCTC 2 cut(s) 325, 350
BsmBI CGTCTC 1 cut(s) 350
BsnI GGCC 2 cut(s) 92, 314
Bsp143I GATC 1 cut(s) 231
Bsp19I CCATGG 1 cut(s) 93
BspACI CCGC 1 cut(s) 256
BspANI GGCC 2 cut(s) 92, 314
BspFNI CGCG 1 cut(s) 258
BspMI ACCTGC 1 cut(s) 212
BspOI GCTAGC 1 cut(s) 152
BspQI GCTCTTC 1 cut(s) 211
BsrFI RCCGGY 1 cut(s) 161
BsrI ACTGG 2 cut(s) 113, 247
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 2 cut(s) 76, 93
BssMI GATC 1 cut(s) 231
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 77
Bst4CI ACNGT 2 cut(s) 293, 344
Bst6I CTCTTC 1 cut(s) 211
BstACI GRCGYC 1 cut(s) 165
BstC8I GCNNGC 2 cut(s) 150, 163
BstDSI CCRYGG 1 cut(s) 93
BstFNI CGCG 1 cut(s) 258
BstH2I RGCGCY 1 cut(s) 149
BstHHI GCGC 1 cut(s) 148
BstKTI GATC 1 cut(s) 234
BstMAI GTCTC 2 cut(s) 325, 350
BstMBI GATC 1 cut(s) 231
BstMWI GCNNNNNNNGC 5 cut(s) 143, 149, 158, 271, 283
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstSFI CTRYAG 1 cut(s) 129
BstUI CGCG 1 cut(s) 258
BstV1I GCAGC 3 cut(s) 155, 261, 298
BsuI GTATCC 1 cut(s) 245
BsuRI GGCC 2 cut(s) 92, 314
BtgI CCRYGG 1 cut(s) 93
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 2 cut(s) 144, 240
BveI ACCTGC 1 cut(s) 212
Cac8I GCNNGC 2 cut(s) 150, 163
CfoI GCGC 1 cut(s) 148
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 1 cut(s) 312
CseI GACGC 1 cut(s) 154
CviAII CATG 2 cut(s) 94, 184
CviJI RGCY 5 cut(s) 92, 126, 152, 265, 314
CviKI_1 RGCY 5 cut(s) 92, 126, 152, 265, 314
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
EaeI YGGCCR 1 cut(s) 90
Eam1104I CTCTTC 1 cut(s) 211
EarI CTCTTC 1 cut(s) 211
Eco130I CCWWGG 1 cut(s) 93
Eco47III AGCGCT 1 cut(s) 147
EcoRII CCWGG 1 cut(s) 75
EcoT14I CCWWGG 1 cut(s) 93
ErhI CCWWGG 1 cut(s) 93
Esp3I CGTCTC 1 cut(s) 350
FaeI CATG 2 cut(s) 97, 187
FaiI YATR 6 cut(s) 89, 95, 185, 191, 272, 355
FatI CATG 2 cut(s) 93, 183
Fnu4HI GCNGC 3 cut(s) 144, 275, 287
Fsp4HI GCNGC 3 cut(s) 144, 275, 287
FspBI CTAG 2 cut(s) 123, 149
GlaI GCGC 1 cut(s) 147
GluI GCNGC 3 cut(s) 144, 275, 287
GsuI CTGGAG 1 cut(s) 264
HaeII RGCGCY 1 cut(s) 149
HaeIII GGCC 2 cut(s) 92, 314
HapII CCGG 1 cut(s) 162
HgaI GACGC 1 cut(s) 154
HhaI GCGC 1 cut(s) 148
Hin1I GRCGYC 1 cut(s) 165
Hin1II CATG 2 cut(s) 97, 187
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HincII GTYRAC 1 cut(s) 181
HindII GTYRAC 1 cut(s) 181
HinfI GANTC 1 cut(s) 333
HpaII CCGG 1 cut(s) 162
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 181, 240
Hpy188I TCNGA 1 cut(s) 330
Hpy188III TCNNGA 1 cut(s) 39
Hpy8I GTNNAC 2 cut(s) 181, 240
HpyCH4III ACNGT 2 cut(s) 293, 344
HpyCH4V TGCA 1 cut(s) 320
HpyF10VI GCNNNNNNNGC 5 cut(s) 143, 149, 158, 271, 283
Hsp92I GRCGYC 1 cut(s) 165
Hsp92II CATG 2 cut(s) 97, 187
HspAI GCGC 1 cut(s) 146
KroI GCCGGC 1 cut(s) 161
KroNI GCCGGC 1 cut(s) 163
Kzo9I GATC 1 cut(s) 231
LguI GCTCTTC 1 cut(s) 211
LpnPI CCDG 9 cut(s) 24, 62, 89, 126, 175, 207, 228, 289, 309
Lsp1109I GCAGC 3 cut(s) 155, 261, 298
LweI GCATC 1 cut(s) 329
MaeI CTAG 2 cut(s) 123, 149
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 1 cut(s) 228
MfeI CAATTG 1 cut(s) 13
MlsI TGGCCA 1 cut(s) 92
MluCI AATT 2 cut(s) 13, 267
MluNI TGGCCA 1 cut(s) 92
MlyI GAGTC 1 cut(s) 327
MmeI TCCRAC 1 cut(s) 308
MnlI CCTC 3 cut(s) 127, 239, 325
Mox20I TGGCCA 1 cut(s) 92
MroNI GCCGGC 1 cut(s) 161
MscI TGGCCA 1 cut(s) 92
MslI CAYNNNNRTG 1 cut(s) 188
Msp20I TGGCCA 1 cut(s) 92
MspI CCGG 1 cut(s) 162
MspR9I CCNGG 1 cut(s) 77
MunI CAATTG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 77
MvnI CGCG 1 cut(s) 258
MwoI GCNNNNNNNGC 5 cut(s) 143, 149, 158, 271, 283
NaeI GCCGGC 1 cut(s) 163
NcoI CCATGG 1 cut(s) 93
NdeII GATC 1 cut(s) 231
NgoMIV GCCGGC 1 cut(s) 161
NheI GCTAGC 1 cut(s) 148
NlaIII CATG 2 cut(s) 97, 187
PciSI GCTCTTC 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 163
PkrI GCNGC 3 cut(s) 145, 276, 288
PleI GAGTC 1 cut(s) 327
PpsI GAGTC 1 cut(s) 327
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspPI GGNCC 1 cut(s) 312
RseI CAYNNNNRTG 1 cut(s) 188
SapI GCTCTTC 1 cut(s) 211
SatI GCNGC 3 cut(s) 144, 275, 287
Sau3AI GATC 1 cut(s) 231
Sau96I GGNCC 1 cut(s) 312
SchI GAGTC 1 cut(s) 327
ScrFI CCNGG 1 cut(s) 77
SetI ASST 5 cut(s) 78, 128, 226, 250, 267
SfaNI GCATC 1 cut(s) 329
SfcI CTRYAG 1 cut(s) 129
SmiMI CAYNNNNRTG 1 cut(s) 188
Sse9I AATT 2 cut(s) 13, 267
SsiI CCGC 1 cut(s) 256
SspMI CTAG 2 cut(s) 123, 149
StyD4I CCNGG 1 cut(s) 75
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 2 cut(s) 293, 344
TasI AATT 2 cut(s) 13, 267
TscAI CASTG 2 cut(s) 144, 247
TseI GCWGC 3 cut(s) 143, 274, 286
TspDTI ATGAA 2 cut(s) 200, 206
TspRI CASTG 2 cut(s) 144, 247
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XspI CTAG 2 cut(s) 123, 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.